mRNA_Ecto-sp13_S_contig19777.6399.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig19777.6399.1
Unique NamemRNA_Ecto-sp13_S_contig19777.6399.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig19777.6399.1 vs. uniprot
Match: A0A6H5JG73_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG73_9PHAE)

HSP 1 Score: 123 bits (308), Expect = 3.960e-35
Identity = 67/68 (98.53%), Postives = 67/68 (98.53%), Query Frame = 1 
Query:    1 MRRVQVGSDESVQATASDAAAGKLSAASLGYFEDRFLEVLVGAASAPVPGTAEATTPSVRRLPPIINR 204
            MRRVQVGSDESVQATASDAAAGKLSAASLGYFEDRFLEVLVGAA APVPGTAEATTPSVRRLPPIINR
Sbjct:    1 MRRVQVGSDESVQATASDAAAGKLSAASLGYFEDRFLEVLVGAAGAPVPGTAEATTPSVRRLPPIINR 68
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BLAST of mRNA_Ecto-sp13_S_contig19777.6399.1 vs. uniprot
Match: D8LL47_ECTSI (Leucine carboxyl methyltransferase 1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LL47_ECTSI)

HSP 1 Score: 126 bits (317), Expect = 1.090e-33
Identity = 68/76 (89.47%), Postives = 69/76 (90.79%), Query Frame = 1 
Query:    1 MRRVQVGSDESVQATASDAAAGKLSAASLGYFEDRFLEVLVGAASAPVPGTAEATTPSVRRLPPIINRGTYTFSQC 228
            MRRVQVGSDESVQATASDAAAGKLSAASLGYFEDRFLEVLVGAA APVPGTAEATTP VRRLPPIINRG +    C
Sbjct:    1 MRRVQVGSDESVQATASDAAAGKLSAASLGYFEDRFLEVLVGAAGAPVPGTAEATTPPVRRLPPIINRGNFARVSC 76
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BLAST of mRNA_Ecto-sp13_S_contig19777.6399.1 vs. uniprot
Match: A0A425BSZ0_9PEZI (Leucine carboxyl methyltransferase 1 (Fragment) n=1 Tax=Scytalidium sp. 3C TaxID=2487125 RepID=A0A425BSZ0_9PEZI)

HSP 1 Score: 51.6 bits (122), Expect = 9.540e-6
Identity = 32/65 (49.23%), Postives = 39/65 (60.00%), Query Frame = 1 
Query:   22 SDESVQATASDAAAGKLSAASLGYFEDRFLEVLVGAASAPVPGTAEATTPSVRRLPPIINRGTYT 216
            SDE++QAT +DAA  +LSA +LGY +DR+ E  V               P  RRLP IINRGTYT
Sbjct:   21 SDETIQATDTDAAVSRLSAVTLGYIDDRYAEYFVNG-------------PRTRRLP-IINRGTYT 71
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig19777.6399.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5JG73_9PHAE3.960e-3598.53Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LL47_ECTSI1.090e-3389.47Leucine carboxyl methyltransferase 1 n=1 Tax=Ectoc... [more]
A0A425BSZ0_9PEZI9.540e-649.23Leucine carboxyl methyltransferase 1 (Fragment) n=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig19777contigEcto-sp13_S_contig19777:2750..2992 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score128.3
Seed ortholog evalue1.7e-27
Seed eggNOG ortholog2880.D8LL47
Preferred nameLCMT1
Model size243
KEGG rclassRC00003,RC00460,RC00745
KEGG koko:K01358,ko:K09272,ko:K15451,ko:K18066,ko:K18203
KEGG ReactionR10586,R10587
KEGG Pathwayko04112,ko04212,map04112,map04212
Hectar predicted targeting categoryother localisation
GOsGO:0000086,GO:0000278,GO:0001510,GO:0003674,GO:0003824,GO:0003880,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005739,GO:0005829,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006464,GO:0006479,GO:0006481,GO:0006725,GO:0006807,GO:0007049,GO:0007088,GO:0007346,GO:0008033,GO:0008150,GO:0008152,GO:0008168,GO:0008171,GO:0008173,GO:0008175,GO:0008213,GO:0008276,GO:0008757,GO:0009058,GO:0009451,GO:0009966,GO:0009968,GO:0009987,GO:0010340,GO:0010467,GO:0010564,GO:0010646,GO:0010648,GO:0010941,GO:0010965,GO:0016070,GO:0016740,GO:0016741,GO:0018410,GO:0018423,GO:0019538,GO:0022402,GO:0023051,GO:0023057,GO:0030071,GO:0030488,GO:0031333,GO:0031590,GO:0031591,GO:0031974,GO:0031981,GO:0032259,GO:0033043,GO:0033044,GO:0033045,GO:0033047,GO:0034470,GO:0034641,GO:0034660,GO:0036211,GO:0042981,GO:0043067,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043254,GO:0043412,GO:0043414,GO:0043687,GO:0044087,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0044770,GO:0044772,GO:0044839,GO:0046483,GO:0048519,GO:0048523,GO:0048583,GO:0048585,GO:0050789,GO:0050794,GO:0051128,GO:0051129,GO:0051726,GO:0051783,GO:0051983,GO:0051998,GO:0065007,GO:0070013,GO:0071704,GO:0090231,GO:0090266,GO:0090304,GO:0140096,GO:0140098,GO:0140101,GO:1900457,GO:1900458,GO:1901135,GO:1901137,GO:1901360,GO:1901564,GO:1901566,GO:1901576,GO:1901657,GO:1901659,GO:1901976,GO:1901987,GO:1901990,GO:1902099,GO:1903047,GO:1903504,GO:1905818
Exons1
EggNOG free text desc.protein C-terminal leucine carboxyl O-methyltransferase activity
EggNOG OGsKOG2918@1,KOG2918@2759
EC1.14.11.42,2.1.1.233,2.1.1.290,2.3.1.231,3.4.21.92
Cds size243
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01002,ko01009,ko03000,ko03016
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462998.4942021-CDS-Ecto-sp13_S_contig19777:2749..29921681462998.4942021-CDS-Ecto-sp13_S_contig19777:2749..2992Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19777 2750..2992 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig19777.6399.1prot_Ecto-sp13_S_contig19777.6399.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig19777 2750..2992 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig19777.6399.1

>prot_Ecto-sp13_S_contig19777.6399.1 ID=prot_Ecto-sp13_S_contig19777.6399.1|Name=mRNA_Ecto-sp13_S_contig19777.6399.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=81bp
MRRVQVGSDESVQATASDAAAGKLSAASLGYFEDRFLEVLVGAASAPVPG
TAEATTPSVRRLPPIINRGTYTFSQCQFNS*
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mRNA from alignment at Ecto-sp13_S_contig19777:2750..2992+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig19777.6399.1 ID=mRNA_Ecto-sp13_S_contig19777.6399.1|Name=mRNA_Ecto-sp13_S_contig19777.6399.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=243bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19777:2750..2992+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAGAAGGGTGCAGGTGGGGAGCGACGAGAGTGTGCAGGCCACGGCGAG
CGATGCTGCAGCTGGGAAGCTTAGCGCGGCTTCATTAGGGTACTTCGAGG
ATCGCTTCTTGGAAGTCCTCGTTGGTGCAGCCAGTGCGCCCGTGCCCGGC
ACAGCAGAGGCAACAACGCCTTCTGTGCGACGGTTGCCCCCTATCATCAA
CCGAGGTACATATACCTTTTCACAATGCCAATTCAATTCTTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig19777:2750..2992+

>mRNA_Ecto-sp13_S_contig19777.6399.1 ID=mRNA_Ecto-sp13_S_contig19777.6399.1|Name=mRNA_Ecto-sp13_S_contig19777.6399.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=243bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19777:2750..2992+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAGAAGGGTGCAGGTGGGGAGCGACGAGAGTGTGCAGGCCACGGCGAG
CGATGCTGCAGCTGGGAAGCTTAGCGCGGCTTCATTAGGGTACTTCGAGG
ATCGCTTCTTGGAAGTCCTCGTTGGTGCAGCCAGTGCGCCCGTGCCCGGC
ACAGCAGAGGCAACAACGCCTTCTGTGCGACGGTTGCCCCCTATCATCAA
CCGAGGTACATATACCTTTTCACAATGCCAATTCAATTCTTGA
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