prot_Ecto-sp13_S_contig1977.6395.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig1977.6395.1
Unique Nameprot_Ecto-sp13_S_contig1977.6395.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length227
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1977.6395.1 vs. uniprot
Match: D8LU89_ECTSI (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU89_ECTSI)

HSP 1 Score: 330 bits (845), Expect = 4.700e-112
Identity = 220/229 (96.07%), Postives = 221/229 (96.51%), Query Frame = 0 
Query:    1 RHEVSQRREVYMSLDVLNQVWTAEMSFLRDMYLLDADFFRFVWGLLQQPEAAGPATATLAAHAGTKVAAEMVAHARASSCVAPWCKRLSQLARAHQHAADNVLALLAVGRRNGSNAGYLRELLVSCPRASTRLAFEHLAVDAVEASSNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEAVA--PASVAVVDQPTSALSRVLLDLLVDESYGSARGASPGGL 227
            RH+VSQ REVYMSLDVLNQVWTAEMSFLRDMYLLDADFFRFVWGLLQQPEAAGPATATLAAHAGTKVA EMVAHARASSCVAPWCKRLSQLARAHQHAADNVLALLAVGRRNGSNAGYLRELLVSCPRASTRLAFEHLAVDAVEASSNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEAVA  PASVAVVDQ TSALSRVLLDLL DESYGSARG S GGL
Sbjct:   15 RHDVSQGREVYMSLDVLNQVWTAEMSFLRDMYLLDADFFRFVWGLLQQPEAAGPATATLAAHAGTKVAVEMVAHARASSCVAPWCKRLSQLARAHQHAADNVLALLAVGRRNGSNAGYLRELLVSCPRASTRLAFEHLAVDAVEASSNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEAVAVAPASVAVVDQQTSALSRVLLDLLADESYGSARGGSLGGL 243
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BLAST of mRNA_Ecto-sp13_S_contig1977.6395.1 vs. uniprot
Match: A0A6H5KTV6_9PHAE (USP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTV6_9PHAE)

HSP 1 Score: 327 bits (839), Expect = 8.910e-100
Identity = 219/229 (95.63%), Postives = 220/229 (96.07%), Query Frame = 0 
Query:    1 RHEVSQRREVYMSLDVLNQVWTAEMSFLRDMYLLDADFFRFVWGLLQQPEAAGPATATLAAHAGTKVAAEMVAHARASSCVAPWCKRLSQLARAHQHAADNVLALLAVGRRNGSNAGYLRELLVSCPRASTRLAFEHLAVDAVEASSNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--EAVAPASVAVVDQPTSALSRVLLDLLVDESYGSARGASPGGL 227
            RH+VSQ REVYMSLDVLNQVWTAEMSFLRDMYLLDADFFRFVWGLLQQPEAAGPATATLAAHAGTKVA EMVAHARASSCVAPWCKRLSQLARAHQHAADNVLALLAVGRRNGSNAGYLRELLVSCPR STRLAFEHLAVDAVEASSNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  EAVAPASVAVVDQ T ALSRVLLDLL DESYGSARGAS GGL
Sbjct: 2412 RHDVSQGREVYMSLDVLNQVWTAEMSFLRDMYLLDADFFRFVWGLLQQPEAAGPATATLAAHAGTKVAVEMVAHARASSCVAPWCKRLSQLARAHQHAADNVLALLAVGRRNGSNAGYLRELLVSCPRTSTRLAFEHLAVDAVEASSNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEAVAPASVAVVDQQTLALSRVLLDLLADESYGSARGASLGGL 2640
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BLAST of mRNA_Ecto-sp13_S_contig1977.6395.1 vs. uniprot
Match: A0A7S2RJQ3_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RJQ3_9STRA)

HSP 1 Score: 58.2 bits (139), Expect = 3.010e-6
Identity = 53/176 (30.11%), Postives = 75/176 (42.61%), Query Frame = 0 
Query:   12 MSLDVLNQVWTAEMSFLRDMYLLDADFFRFVWGLLQQP-EAAGPATATL-------------------------AAHAGTKVAAEMVAHARASSCVAPWCKRLSQLARAHQHAADNVLALL----AVGRR------------NGS--NAGYLRELLVSCPRASTRLAFEHLAVDAV 143
            M+  V   VW   ++FL D +  + D FRF+W ++     AA P  A L                         A   G +   ++VAHARA SCV  WC +L  LA+  +  A   L LL    AV R             +G+  + G+L ++LV CP  S++ AF HL    V
Sbjct:  174 MTPAVQRAVWDESLAFLFDRHTFNVDHFRFLWHIVDCTIPAASPPRAGLRDKELVGSPREAPEPHHMELGACARATEVGLQFLVDVVAHARAKSCVPSWCGQLLSLAQQSEDVAKVALRLLTGEDAVARAFPHEGDTRVAPLDGARESRGWLAQMLVLCPHDSSKDAFIHLITTLV 349
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1977.6395.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LU89_ECTSI4.700e-11296.07Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5KTV6_9PHAE8.910e-10095.63USP domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A7S2RJQ3_9STRA3.010e-630.11Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1977contigEcto-sp13_S_contig1977:118..2144 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1977.6395.1mRNA_Ecto-sp13_S_contig1977.6395.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig1977 118..2144 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig1977.6395.1 ID=prot_Ecto-sp13_S_contig1977.6395.1|Name=mRNA_Ecto-sp13_S_contig1977.6395.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=227bp
RHEVSQRREVYMSLDVLNQVWTAEMSFLRDMYLLDADFFRFVWGLLQQPE
AAGPATATLAAHAGTKVAAEMVAHARASSCVAPWCKRLSQLARAHQHAAD
NVLALLAVGRRNGSNAGYLRELLVSCPRASTRLAFEHLAVDAVEASSNPP
PPPPYDDYDDNAPPGSGGATSAVVSSEDEDEQQPPEAVAPASVAVVDQPT
SALSRVLLDLLVDESYGSARGASPGGL
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