mRNA_Ecto-sp13_S_contig1977.6395.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1977.6395.1
Unique NamemRNA_Ecto-sp13_S_contig1977.6395.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1977.6395.1 vs. uniprot
Match: D8LU89_ECTSI (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU89_ECTSI)

HSP 1 Score: 330 bits (845), Expect = 4.700e-112
Identity = 220/229 (96.07%), Postives = 221/229 (96.51%), Query Frame = 1 
Query:    1 RHEVSQRREVYMSLDVLNQVWTAEMSFLRDMYLLDADFFRFVWGLLQQPEAAGPATATLAAHAGTKVAAEMVAHARASSCVAPWCKRLSQLARAHQHAADNVLALLAVGRRNGSNAGYLRELLVSCPRASTRLAFEHLAVDAVEASSNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEAVA--PASVAVVDQPTSALSRVLLDLLVDESYGSARGASPGGL 681
            RH+VSQ REVYMSLDVLNQVWTAEMSFLRDMYLLDADFFRFVWGLLQQPEAAGPATATLAAHAGTKVA EMVAHARASSCVAPWCKRLSQLARAHQHAADNVLALLAVGRRNGSNAGYLRELLVSCPRASTRLAFEHLAVDAVEASSNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEAVA  PASVAVVDQ TSALSRVLLDLL DESYGSARG S GGL
Sbjct:   15 RHDVSQGREVYMSLDVLNQVWTAEMSFLRDMYLLDADFFRFVWGLLQQPEAAGPATATLAAHAGTKVAVEMVAHARASSCVAPWCKRLSQLARAHQHAADNVLALLAVGRRNGSNAGYLRELLVSCPRASTRLAFEHLAVDAVEASSNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEAVAVAPASVAVVDQQTSALSRVLLDLLADESYGSARGGSLGGL 243
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BLAST of mRNA_Ecto-sp13_S_contig1977.6395.1 vs. uniprot
Match: A0A6H5KTV6_9PHAE (USP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTV6_9PHAE)

HSP 1 Score: 327 bits (839), Expect = 8.910e-100
Identity = 219/229 (95.63%), Postives = 220/229 (96.07%), Query Frame = 1 
Query:    1 RHEVSQRREVYMSLDVLNQVWTAEMSFLRDMYLLDADFFRFVWGLLQQPEAAGPATATLAAHAGTKVAAEMVAHARASSCVAPWCKRLSQLARAHQHAADNVLALLAVGRRNGSNAGYLRELLVSCPRASTRLAFEHLAVDAVEASSNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--EAVAPASVAVVDQPTSALSRVLLDLLVDESYGSARGASPGGL 681
            RH+VSQ REVYMSLDVLNQVWTAEMSFLRDMYLLDADFFRFVWGLLQQPEAAGPATATLAAHAGTKVA EMVAHARASSCVAPWCKRLSQLARAHQHAADNVLALLAVGRRNGSNAGYLRELLVSCPR STRLAFEHLAVDAVEASSNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  EAVAPASVAVVDQ T ALSRVLLDLL DESYGSARGAS GGL
Sbjct: 2412 RHDVSQGREVYMSLDVLNQVWTAEMSFLRDMYLLDADFFRFVWGLLQQPEAAGPATATLAAHAGTKVAVEMVAHARASSCVAPWCKRLSQLARAHQHAADNVLALLAVGRRNGSNAGYLRELLVSCPRTSTRLAFEHLAVDAVEASSNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEAVAPASVAVVDQQTLALSRVLLDLLADESYGSARGASLGGL 2640
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BLAST of mRNA_Ecto-sp13_S_contig1977.6395.1 vs. uniprot
Match: A0A7S2RJQ3_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RJQ3_9STRA)

HSP 1 Score: 58.2 bits (139), Expect = 3.010e-6
Identity = 53/176 (30.11%), Postives = 75/176 (42.61%), Query Frame = 1 
Query:   34 MSLDVLNQVWTAEMSFLRDMYLLDADFFRFVWGLLQQP-EAAGPATATL-------------------------AAHAGTKVAAEMVAHARASSCVAPWCKRLSQLARAHQHAADNVLALL----AVGRR------------NGS--NAGYLRELLVSCPRASTRLAFEHLAVDAV 429
            M+  V   VW   ++FL D +  + D FRF+W ++     AA P  A L                         A   G +   ++VAHARA SCV  WC +L  LA+  +  A   L LL    AV R             +G+  + G+L ++LV CP  S++ AF HL    V
Sbjct:  174 MTPAVQRAVWDESLAFLFDRHTFNVDHFRFLWHIVDCTIPAASPPRAGLRDKELVGSPREAPEPHHMELGACARATEVGLQFLVDVVAHARAKSCVPSWCGQLLSLAQQSEDVAKVALRLLTGEDAVARAFPHEGDTRVAPLDGARESRGWLAQMLVLCPHDSSKDAFIHLITTLV 349
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1977.6395.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LU89_ECTSI4.700e-11296.07Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5KTV6_9PHAE8.910e-10095.63USP domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A7S2RJQ3_9STRA3.010e-630.11Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1977contigEcto-sp13_S_contig1977:118..2144 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size681
Hectar predicted targeting categoryother localisation
Exons3
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-14_004090.1
Cds size681
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462998.1619477-CDS-Ecto-sp13_S_contig1977:117..3151681462998.1619477-CDS-Ecto-sp13_S_contig1977:117..315Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1977 118..315 +
1681462998.1782813-CDS-Ecto-sp13_S_contig1977:1054..12011681462998.1782813-CDS-Ecto-sp13_S_contig1977:1054..1201Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1977 1055..1201 +
1681462998.186688-CDS-Ecto-sp13_S_contig1977:1808..21441681462998.186688-CDS-Ecto-sp13_S_contig1977:1808..2144Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1977 1809..2144 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1977.6395.1prot_Ecto-sp13_S_contig1977.6395.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1977 118..2144 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1977.6395.1

>prot_Ecto-sp13_S_contig1977.6395.1 ID=prot_Ecto-sp13_S_contig1977.6395.1|Name=mRNA_Ecto-sp13_S_contig1977.6395.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=227bp
RHEVSQRREVYMSLDVLNQVWTAEMSFLRDMYLLDADFFRFVWGLLQQPE
AAGPATATLAAHAGTKVAAEMVAHARASSCVAPWCKRLSQLARAHQHAAD
NVLALLAVGRRNGSNAGYLRELLVSCPRASTRLAFEHLAVDAVEASSNPP
PPPPYDDYDDNAPPGSGGATSAVVSSEDEDEQQPPEAVAPASVAVVDQPT
SALSRVLLDLLVDESYGSARGASPGGL
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mRNA from alignment at Ecto-sp13_S_contig1977:118..2144+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1977.6395.1 ID=mRNA_Ecto-sp13_S_contig1977.6395.1|Name=mRNA_Ecto-sp13_S_contig1977.6395.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2027bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1977:118..2144+ (Ectocarpus species13 EcNAP12_S_4_19m)
AGACACGAAGTGTCCCAGAGGCGAGAGGTATACATGTCCCTGGACGTGCT
GAACCAGGTGTGGACAGCAGAGATGTCTTTCCTTCGAGACATGTACCTCC
TCGACGCCGACTTCTTCCGCTTCGTGTGGGGCCTGCTGCAGCAGCCGGAG
GCGGCGGGGCCGGCCACAGCCACCCTCGCCGCGCACGCTGGCACAAAGGT
GCGTTGTGTCTTGCGTGTTGTGTTTTCTGTTAGCGTCGACAGCGTTTTGC
CGGCAGACCAATGGGAAAGACATCGGTGTCAGCTTGGCTATCTACGGTAG
CAGTAGCGACACCTATCGACCACGATCAAATGGTCAGGGTAGGTGAGCAG
CCGAGCATTCCAAGGGAGGGAGGTTCCACCCGTGTGACCGTCCTAAAAAC
AAAAAAAAAGCGTTACAACAATGTCAACTGACGAGGCTCTACTACTGCAC
ACACACGCAAGCACCCTCCGTGATTTGTTTGCGTTGAACTGTGACGCACC
TTTGCCTGATTGCCGTGCGGAGACTGAGTCATTTCCACGGGTCGACAGTG
TTGCAACTCCTAACAGTACGCCACACATGCACCTGCCAGGTTGAAGCGTT
ACGTATCCGTTTGAAACACAAGATCACGTGTCGACGGTGTCGTGAATGTT
TGAACTCGACCATCGCCGCTTTCTCGCATTCGCATTGTTGGAAGGACACG
CGGCAGACAAAAGTAGTGGAGGTGAGGCTTGCTTTTTCCCCTCTGACTTG
TCTCGAATCTATATCTGGGGAGTTAAAGGTGGAAACCACCGTGCGTATGA
GATATTACAAGCAGCAAGCCCGACGTCCCCGCTCACTCATGCAACAACTC
ATGTCGGAACCCCATCCACTCCCCGCACGGCCGCCATCCCCGCGCTTGCA
CGTTAACGCTAACGCTCGGGTGCGGTACGCGATAAAGGTTGCCGCGGAGA
TGGTCGCGCACGCGAGGGCGAGCTCCTGCGTCGCTCCGTGGTGCAAGCGT
CTCTCACAGCTGGCGCGGGCTCACCAGCACGCGGCGGACAACGTGCTGGC
CCTGCTCGCCGTCGGTCGAAGAAACGGCTCTAACGTGAGAGCTAGAGCGA
GAGCTAGAGCTAGAGTCGTGGGGTTGTGTAGCAACAACAACGAGAGGGCG
CACCATGCATTGTTGTGTCGTAAAATAGTAATCGGATGCTGACATCAATG
ACGAGAACAATGACTTCGTCCCAGGGCCCGCGGGTGTTGGTTGGCAGCAA
AGGGATGGAGCCCGCTTGCCCCGCCGCCACAACTGTCTTGAGGCCTTGTC
GGCCGGGGTTGTAAGGAGTAGCACTTGAGAGTGTTTTTGTTCGCGTTCAA
ACCGTCGAGCGTATGGTACTGTGGAGGTCTGCCGTGTCGGCCGGATTTGT
CGTACGACAATGTGTGTTTCGCTCCCGGTCCCCGTTCTCCGTTTGCCGTC
GGCGTGCTCCGTTCCGGCTTTGTAGGGATGCGAGGTCAATGGTCTGAAGA
CCACGGCATGCATGGCTATGAGCACTCTGCCTCCCCCCATTGCCGTCCCC
CACACCACACGCTACCACCTCTGCCTATCATTCTGCCTGCTACACATGTA
CGTCTTTCTCTCGCCTTTGTGCTAACGGTTTTTTCCTTGCACCCTCTCCC
TCTCTCCCCCGTCCGTCCGTCCCTCCCTCCCTCCCTCCAAGGCCGGGTAC
CTGAGAGAGCTCCTCGTCTCTTGCCCGCGAGCCTCTACCCGCCTTGCCTT
CGAGCACCTCGCGGTGGACGCCGTCGAGGCTTCGTCCAACCCGCCGCCGC
CGCCGCCCTACGACGACTACGACGATAACGCGCCGCCAGGGAGCGGCGGT
GCGACGAGCGCGGTCGTTTCGTCGGAGGACGAAGACGAACAACAACCTCC
GGAGGCGGTGGCGCCGGCGAGCGTCGCCGTCGTTGACCAACCAACCTCGG
CGCTGTCCCGGGTCCTGCTGGACCTCCTGGTGGACGAGTCGTACGGGTCG
GCGCGGGGCGCGTCGCCCGGGGGCCTG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1977:118..2144+

>mRNA_Ecto-sp13_S_contig1977.6395.1 ID=mRNA_Ecto-sp13_S_contig1977.6395.1|Name=mRNA_Ecto-sp13_S_contig1977.6395.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=681bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1977:118..2144+ (Ectocarpus species13 EcNAP12_S_4_19m)
AGACACGAAGTGTCCCAGAGGCGAGAGGTATACATGTCCCTGGACGTGCT
GAACCAGGTGTGGACAGCAGAGATGTCTTTCCTTCGAGACATGTACCTCC
TCGACGCCGACTTCTTCCGCTTCGTGTGGGGCCTGCTGCAGCAGCCGGAG
GCGGCGGGGCCGGCCACAGCCACCCTCGCCGCGCACGCTGGCACAAAGGT
TGCCGCGGAGATGGTCGCGCACGCGAGGGCGAGCTCCTGCGTCGCTCCGT
GGTGCAAGCGTCTCTCACAGCTGGCGCGGGCTCACCAGCACGCGGCGGAC
AACGTGCTGGCCCTGCTCGCCGTCGGTCGAAGAAACGGCTCTAACGCCGG
GTACCTGAGAGAGCTCCTCGTCTCTTGCCCGCGAGCCTCTACCCGCCTTG
CCTTCGAGCACCTCGCGGTGGACGCCGTCGAGGCTTCGTCCAACCCGCCG
CCGCCGCCGCCCTACGACGACTACGACGATAACGCGCCGCCAGGGAGCGG
CGGTGCGACGAGCGCGGTCGTTTCGTCGGAGGACGAAGACGAACAACAAC
CTCCGGAGGCGGTGGCGCCGGCGAGCGTCGCCGTCGTTGACCAACCAACC
TCGGCGCTGTCCCGGGTCCTGCTGGACCTCCTGGTGGACGAGTCGTACGG
GTCGGCGCGGGGCGCGTCGCCCGGGGGCCTG
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