mRNA_Ecto-sp13_S_contig19764.6393.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig19764.6393.1
Unique NamemRNA_Ecto-sp13_S_contig19764.6393.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig19764.6393.1 vs. uniprot
Match: D7FKU9_ECTSI (Derlin n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FKU9_ECTSI)

HSP 1 Score: 513 bits (1321), Expect = 8.130e-181
Identity = 265/277 (95.67%), Postives = 269/277 (97.11%), Query Frame = 1
Query:    1 ARSALHSIALQMPPATRAYVLLLMVITAVDVSVGEAIDSGNTFSMDWGRTVKGLELWRPLTSLVYLGPLSMSWLTNVYFLTQHGTRLELVSGTAEQVIFLLVVGSLLLFLGPLIGMPLLSTSMVAAHTYVSARMDPLGAVQFQFLRIPMWTLPFAQMGAAVLQAEGSPLAAIPHFVGILCGHVYHFFTVVHPLMGAKRRLGAPGWMKRRLDGGDNPNFMETPDEPAAPRGRKIGAGKKAANKSKTRGTSKSGSSGSKRGGGKGRPVPDFPTADGGCS 831
            A SAL  +   MPPATRAYVLLLMVITAVDVSVG+AIDSGNTFSMDWGRTVKGLELWRPLTSLVYLGPLSMSWLTNVYFLTQHGTRLELVSGTAEQVIFLLVVGSLLLFLGPLIGMPLLSTSMVAAHTYVSARMDPLGAVQFQFLRIPMWTLPFAQMGAAVLQAEGSPLAAIPHFVGILCGHVYHFFTVVHPLMGAKRRLGAPGWMKRRLDGGDNPNFMETPDEPAAPRGRKIGAGKK A+KSKTRGTSKSGSSGSK+GGGK RPVPDFPTADGGCS
Sbjct:   98 ALSALTGVFKNMPPATRAYVLLLMVITAVDVSVGKAIDSGNTFSMDWGRTVKGLELWRPLTSLVYLGPLSMSWLTNVYFLTQHGTRLELVSGTAEQVIFLLVVGSLLLFLGPLIGMPLLSTSMVAAHTYVSARMDPLGAVQFQFLRIPMWTLPFAQMGAAVLQAEGSPLAAIPHFVGILCGHVYHFFTVVHPLMGAKRRLGAPGWMKRRLDGGDNPNFMETPDEPAAPRGRKIGAGKKTASKSKTRGTSKSGSSGSKKGGGKARPVPDFPTADGGCS 374          
BLAST of mRNA_Ecto-sp13_S_contig19764.6393.1 vs. uniprot
Match: A0A836CEG4_9STRA (Tricarboxylate carrier-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CEG4_9STRA)

HSP 1 Score: 189 bits (480), Expect = 8.220e-52
Identity = 101/192 (52.60%), Postives = 129/192 (67.19%), Query Frame = 1
Query:  109 IDSGNTFSMDWGRTVKGLELWRPLTSLVYLGPLSMSWLTNVYFLTQHGTRLELVSGTAEQVIFLLVVGSLLLFLGPLIGMPLLSTSMVAAHTYVSARMDPLGAVQFQF-LRIPMWTLPFAQMGAAVLQAEGSPLAAIPHFVGILCGHVYHFFTVVHPLMGAKRRLGAPGWMKRRLDGGDNP-NFMETPDEPA 678
            +D+   F   W RT+  LELWRPLT+ +YLGP+SM W TNVYFL  +G+ LE V+GTAEQ++FLL     +  LG LI +P++STS+++A  Y SAR+DPLG+V FQF L++P W LP+       LQA G   AAIPH VGIL GH Y F     PLMG +  L APGW++RR+DGG    NFME P + A
Sbjct:    7 VDAKEVFVASWPRTILNLELWRPLTAALYLGPISMHWATNVYFLITYGSHLEAVNGTAEQIVFLLTAFVCVTILGALISLPVVSTSLISACVYGSARVDPLGSVPFQFGLQMPRWLLPYGLAVVDFLQA-GKIEAAIPHAVGILAGHFYTFNRNTLPLMGGRDWLRAPGWLQRRVDGGGGATNFMEKPKKTA 197          
BLAST of mRNA_Ecto-sp13_S_contig19764.6393.1 vs. uniprot
Match: A0A6U1QM22_9STRA (Derlin n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A6U1QM22_9STRA)

HSP 1 Score: 160 bits (405), Expect = 6.780e-43
Identity = 85/200 (42.50%), Postives = 124/200 (62.00%), Query Frame = 1
Query:   40 PATRAYVLLLMVITAVDVSVGEAIDSGNTFSMDWGRTVKGLELWRPLTSLVYLGPLSMSWLTNVYFLTQHGTRLELVSGTAEQVIFLLVVGSLLLFLGPLIGMPLLSTSMVAAHTYVSARMDPLG--AVQFQFLRIPMWTLPFAQMGAAVLQAEGSPLAAIPHFVGILCGHVYHFFTVVHPLMGAKRRLGAPGWMKRRLD 633
            PATR Y+ + +V+T V ++    +D+    S++  RT K LE+WRP+TS  ++GP SM    N+YFL ++G  LE   GT + V FL+    LL  LG ++G P +S+S++ A  +  +R+DP+    V F  L +P W LPFA MG  +LQA+ S  A IPH  G L GH YHFF  ++PL+G ++ L AP ++KR LD
Sbjct:   90 PATRVYLSIALVLTVVHMT--GMVDAQQLLSLNLVRTFKNLEIWRPITSTCFMGPPSMQMAGNIYFLVKYGQELEANDGTLQHVFFLMTQLVLLSILGGVLGAPFMSSSLITAQLWCCSRLDPMSMVGVGFMGLAVPHWLLPFALMGIDILQAQ-SIAAGIPHVFGFLTGHFYHFFYRIYPLLGGRKLLEAPNFLKRMLD 286          
BLAST of mRNA_Ecto-sp13_S_contig19764.6393.1 vs. uniprot
Match: A0A1Z5K2V8_FISSO (Derlin n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5K2V8_FISSO)

HSP 1 Score: 147 bits (371), Expect = 3.700e-38
Identity = 89/228 (39.04%), Postives = 133/228 (58.33%), Query Frame = 1
Query:   40 PATRAYVLLLMVITAVDVSVGEAIDSGNTFSMDWGRTVKGLELWRPLTSLVYLGPLSMSWLTNVYFLTQHGTRLELVSGTAEQVIFLLVVGSLLLFLGPLIGMPLLSTSMVAAHTYVSARMDPLGAVQFQFLRIPMWTLPFAQMGAAVLQAEGSPLAAIPHFVGILCGHVYHFFTVVHP-LMGAKRRLGAPGWMKRRLDGGDNPNFMETPDEPAAPR----GRKIGAG 708
            P TR Y+ L+ V T + + +GE +  G   ++D  R + GL+LWRP+T+  +LGP S+SWL N Y+L Q+G+ LE   GTA+  +FLL    LL     L+G P  + SM+ +  +V +R  P   V++    +P W+LP+  M + VLQA+ SP+AA+PH +GIL GH YHF   + P L   +  L AP ++ +RLD  D     E+  +    R    GRK+G+G
Sbjct:   94 PLTRIYITLVGVATLLGLVLGEELTQG-LLALDPMRVLYGLQLWRPITAATFLGPPSISWLLNGYYLFQYGSSLERAYGTAQHSVFLLSQLVLLSIFSTLVGQPFFANSMITSMLHVLSRSMPHQKVKWLVFTVPYWSLPYGLMASDVLQAQ-SPMAALPHIMGILTGHFYHFHKHIWPKLEQGQDWLVAPEFLSKRLDPADKDAGKESVSKALKLRKKNKGRKLGSG 319          
BLAST of mRNA_Ecto-sp13_S_contig19764.6393.1 vs. uniprot
Match: A0A7S4N1A3_9STRA (Derlin n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4N1A3_9STRA)

HSP 1 Score: 144 bits (363), Expect = 5.550e-38
Identity = 82/225 (36.44%), Postives = 132/225 (58.67%), Query Frame = 1
Query:   40 PATRAYVLLLMVITAVDVSVGEAIDSGNTFSMDWGRTVKGLELWRPLTSLVYLGPLSMSWLTNVYFLTQHGTRLELVSGTAEQVIFLLVVGSLLLFLGPLIGMPLLSTSMVAAHTYVSARMDPLGAVQFQFLRIPMWTLPFAQMGAAVLQAEGSPLAAIPHFVGILCGHVYHFFTVVHPLMGAKRRLGAPGWMKRRLDGGDNPNFMETPDEPAAPRGRKIGAGKK 714
            P TR Y+ ++ V+T + + +GE +  G   ++D  R + GLELWRP T+  +LGP S+ WL + Y+L ++G+ LE   GTA+ ++FL+    LL  L    G P  +  ++ A  +V +R  P   V++    +P W+LP+  M + VLQA+ SP+AA+PH +GIL GH Y F+  + P MG +  L AP ++ + LD     +  ++ +  AA + RK G G+K
Sbjct:    9 PLTRIYITMIGVVTLMGLVLGEELAQG-VLALDPIRVMYGLELWRPFTAACFLGPPSIGWLMSAYYLFEYGSSLERAYGTAQHLVFLIWQIVLLTVLSAFFGQPFFAQPVITAMLHVLSRSMPKQKVKWLIFNVPYWSLPYGLMASDVLQAQ-SPMAALPHIMGILTGHFYFFYKFIWPKMGGEDWLTAPDFLSQWLDPNARSDSKKSVN--AALKARKKGKGRK 229          
BLAST of mRNA_Ecto-sp13_S_contig19764.6393.1 vs. uniprot
Match: A0A7S1XM51_9STRA (Derlin n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XM51_9STRA)

HSP 1 Score: 145 bits (365), Expect = 3.140e-37
Identity = 83/204 (40.69%), Postives = 123/204 (60.29%), Query Frame = 1
Query:   31 QMPPATRAYVLLLMVITAVDVSVGEAIDSGNTFSMDWGRTVKGLELWRPLTSLVYLGPLSMSWLTNVYFLTQHGTRLELVSGTAEQVIFLLVVGSLLLFLGPLIGMPLLSTSMVAAHTYVSARMDPLGAVQFQFL--RIPMWTLPFAQMGAAVLQAEGSPLAAIPHFVGILCGHVYHFFTVVHPLMGAKRRLGAPGWMKRRLDG 636
            ++ PATR Y+ + M +T V  +    +   N  ++D   T+  L+ WRPLTS  +LGPL+M+  T++YF+   G  LE   GTA+ V+FL+   +LL  LGP++GMP  S+S+V+A  +VS R  P+  +   F+   +  W +PFA+M    LQA+ S  AA+PH +G L GH YHF T + PL+G    L AP  MK+ L+G
Sbjct:   90 KLKPATRLYLSVAMALTMVATA---GLVDPNLMALDPLATIFNLQFWRPLTSAFFLGPLNMNMATSLYFVAMFGQELEKDKGTADYVVFLISQITLLTLLGPMLGMPYTSSSLVSAALWVSCRRKPMQKMGLGFMGMSVEAWLVPFARMVMDSLQAQ-SGAAALPHMLGFLTGHCYHFVTKIWPLVGGTNWLDAPPRMKKMLNG 289          
BLAST of mRNA_Ecto-sp13_S_contig19764.6393.1 vs. uniprot
Match: A0A6U6GRJ3_9STRA (Derlin n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A6U6GRJ3_9STRA)

HSP 1 Score: 144 bits (363), Expect = 5.880e-37
Identity = 82/225 (36.44%), Postives = 132/225 (58.67%), Query Frame = 1
Query:   40 PATRAYVLLLMVITAVDVSVGEAIDSGNTFSMDWGRTVKGLELWRPLTSLVYLGPLSMSWLTNVYFLTQHGTRLELVSGTAEQVIFLLVVGSLLLFLGPLIGMPLLSTSMVAAHTYVSARMDPLGAVQFQFLRIPMWTLPFAQMGAAVLQAEGSPLAAIPHFVGILCGHVYHFFTVVHPLMGAKRRLGAPGWMKRRLDGGDNPNFMETPDEPAAPRGRKIGAGKK 714
            P TR Y+ ++ V+T + + +GE +  G   ++D  R + GLELWRP T+  +LGP S+ WL + Y+L ++G+ LE   GTA+ ++FL+    LL  L    G P  +  ++ A  +V +R  P   V++    +P W+LP+  M + VLQA+ SP+AA+PH +GIL GH Y F+  + P MG +  L AP ++ + LD     +  ++ +  AA + RK G G+K
Sbjct:  103 PLTRIYITMIGVVTLMGLVLGEELAQG-VLALDPIRVMYGLELWRPFTAACFLGPPSIGWLMSAYYLFEYGSSLERAYGTAQHLVFLIWQIVLLTVLSAFFGQPFFAQPVITAMLHVLSRSMPKQKVKWLIFNVPYWSLPYGLMASDVLQAQ-SPMAALPHIMGILTGHFYFFYKFIWPKMGGEDWLTAPDFLSQWLDPNARSDSKKSVN--AALKARKKGKGRK 323          
BLAST of mRNA_Ecto-sp13_S_contig19764.6393.1 vs. uniprot
Match: A0A7S2P7M0_9STRA (Derlin n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2P7M0_9STRA)

HSP 1 Score: 142 bits (359), Expect = 2.310e-36
Identity = 86/229 (37.55%), Postives = 131/229 (57.21%), Query Frame = 1
Query:   34 MPPATRAYVLLLMVITAVDVSVGEAIDSGNTFSM--DWGRTVKGLELWRPLTSLVYLGPLSMSWLTNVYFLTQHGTRLELVSGTAEQVIFLLVVGSLLLFLGPLIGMPLLSTSMVAAHTYVSARMDPLGAVQFQFLRIPMWTLPFAQMGAAVLQAEGSPLAAIPHFVGILCGHVYHFFTVVHPLMGAKRRLGAPGWMKRRLDGGDNPNFMETPDEPAAPRGRKIGAGKK 714
            M P TR Y+ ++ ++T + + VG   D G    M  D  R + GLELWRP T+  +LGP S+ WL N Y+L ++G+ LE   G+A+ ++FLL    LL +L  +   P   +SM+ A  +V +R  P   V++    +P W+LP+  M + VLQ++ SP +A+PH +GIL GH YHF   + P +G +  L AP ++ +RLD  D    +       A +GRK G G+K
Sbjct:  101 MLPLTRVYITVVGIVTLLGLIVG---DEGAQMLMAFDMNRVLHGLELWRPFTAAAFLGPPSIGWLMNGYYLFEYGSSLERAYGSAQFLLFLLGQIFLLSWLSGIFAQPFFGSSMITAMLHVLSRSMPNQKVKWLIFTVPYWSLPYGLMASDVLQSQ-SPASALPHIIGILTGHFYHFHKFIWPKVGGEDWLVAPEFLSKRLDA-DAKRDVAKETISNALKGRKKGKGRK 324          
BLAST of mRNA_Ecto-sp13_S_contig19764.6393.1 vs. uniprot
Match: A0A7R9U412_9STRA (Derlin (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U412_9STRA)

HSP 1 Score: 140 bits (352), Expect = 2.370e-35
Identity = 84/201 (41.79%), Postives = 120/201 (59.70%), Query Frame = 1
Query:   40 PATRAYVLLLMVITAVDVSVGEAIDSGNTFSMDWGRTVKGLELWRPLTSLVYLGPLSMSWLTNVYFLTQHGTRLELVSGTAEQVIFLLVVGSLLLFLGPLIGMPLLSTSMVAAHTYVSARMDPLGAVQFQFLRIPM--WTLPFAQMGAAVLQAEGSPLAAIPHFVGILCGHVYHFFTVVHPLMGAKRRLGAPGWMKRRLDG 636
            PATR Y+   + +T +       I + N  ++D    + GL+ WRPLTS ++LG L+M   T++YFL  +G  LE   GTA+ V+FLL    LL  L PL+GMP  S+S+V+A  +VS R  P+  +    + I M  W +PF +M    LQA+ +P+AA+PH +G + GH YHF T V PL+G K  L AP  MK+ L+G
Sbjct:  111 PATRLYITGALALTLLATF---GIVNPNMLALDPMAALLGLQFWRPLTSALFLGGLNMQMATSLYFLGMYGQELEKDRGTADYVVFLLTQVILLSVLAPLLGMPYTSSSVVSAALWVSCRRRPMQKLSLGVMGISMEAWLVPFGRMLIECLQAQ-NPIAALPHMLGFVSGHFYHFTTRVWPLLGGKDWLQAPPKMKKLLNG 307          
BLAST of mRNA_Ecto-sp13_S_contig19764.6393.1 vs. uniprot
Match: B7FP36_PHATC (Derlin n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7FP36_PHATC)

HSP 1 Score: 139 bits (349), Expect = 6.210e-35
Identity = 75/198 (37.88%), Postives = 113/198 (57.07%), Query Frame = 1
Query:   40 PATRAYVLLLMVITAVDVSVGEAIDSGNTFSMDWGRTVKGLELWRPLTSLVYLGPLSMSWLTNVYFLTQHGTRLELVSGTAEQVIFLLVVGSLLLFLGPLIGMPLLSTSMVAAHTYVSARMDPLGAVQFQFLRIPMWTLPFAQMGAAVLQAEGSPLAAIPHFVGILCGHVYHFFTVVHPLMGAKRRLGAPGWMKRRLD 633
            P TR Y+ ++ V T + +  GE     +  ++D  R   G E WRP T+  +LGP+S+ WL + Y+L ++G+ LE   GTA+  +FL+     L FL  L G P    SM+ A  +V +R  P   V++    +P W+LP+  M + VLQA+ S +AA+PH +GI+ GH YHF   + P  G +  L AP ++ RRLD
Sbjct:  102 PLTRIYITMVGVATLISIIFGEEFTQ-SLLALDPTRAFYGFEFWRPFTAASFLGPISIGWLMSGYYLFEYGSSLERAYGTAQHFVFLMSQVFGLTFLSSLTGQPFFGQSMITAMLHVLSRAMPHQKVKWLIFTVPYWSLPYGLMASDVLQAQ-SAMAALPHILGIVSGHFYHFHKFIWPKKGGEDWLVAPDFLVRRLD 297          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig19764.6393.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FKU9_ECTSI8.130e-18195.67Derlin n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FKU9_... [more]
A0A836CEG4_9STRA8.220e-5252.60Tricarboxylate carrier-domain-containing protein n... [more]
A0A6U1QM22_9STRA6.780e-4342.50Derlin n=1 Tax=Fibrocapsa japonica TaxID=94617 Rep... [more]
A0A1Z5K2V8_FISSO3.700e-3839.04Derlin n=1 Tax=Fistulifera solaris TaxID=1519565 R... [more]
A0A7S4N1A3_9STRA5.550e-3836.44Derlin n=1 Tax=Odontella aurita TaxID=265563 RepID... [more]
A0A7S1XM51_9STRA3.140e-3740.69Derlin n=1 Tax=Phaeomonas parva TaxID=124430 RepID... [more]
A0A6U6GRJ3_9STRA5.880e-3736.44Derlin n=1 Tax=Odontella aurita TaxID=265563 RepID... [more]
A0A7S2P7M0_9STRA2.310e-3637.55Derlin n=1 Tax=Leptocylindrus danicus TaxID=163516... [more]
A0A7R9U412_9STRA2.370e-3541.79Derlin (Fragment) n=1 Tax=Pinguiococcus pyrenoidos... [more]
B7FP36_PHATC6.210e-3537.88Derlin n=2 Tax=Phaeodactylum tricornutum TaxID=285... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig19764contigEcto-sp13_S_contig19764:12..2659 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score517.7
Seed ortholog evalue3.2e-144
Seed eggNOG ortholog2880.D7FKU9
Model size980
KEGG koko:K11519
KEGG Pathwayko04141,ko05014,map04141,map05014
KEGG ModuleM00403
Hectar predicted targeting categorysignal peptide
Exons5
EggNOG free text desc.ubiquitin-dependent ERAD pathway
EggNOG OGsCOG5291@1,KOG0858@2759
Cds size801
COG Functional cat.I
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig19764.6393.1prot_Ecto-sp13_S_contig19764.6393.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig19764 45..2513 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462997.9908748-UTR-Ecto-sp13_S_contig19764:11..441681462997.9908748-UTR-Ecto-sp13_S_contig19764:11..44Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig19764 12..44 +
1681462998.0581248-UTR-Ecto-sp13_S_contig19764:2513..26591681462998.0581248-UTR-Ecto-sp13_S_contig19764:2513..2659Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig19764 2514..2659 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462998.0017724-CDS-Ecto-sp13_S_contig19764:44..1671681462998.0017724-CDS-Ecto-sp13_S_contig19764:44..167Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19764 45..167 +
1681462998.0118449-CDS-Ecto-sp13_S_contig19764:569..7221681462998.0118449-CDS-Ecto-sp13_S_contig19764:569..722Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19764 570..722 +
1681462998.0223267-CDS-Ecto-sp13_S_contig19764:1208..12971681462998.0223267-CDS-Ecto-sp13_S_contig19764:1208..1297Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19764 1209..1297 +
1681462998.0318768-CDS-Ecto-sp13_S_contig19764:1719..17961681462998.0318768-CDS-Ecto-sp13_S_contig19764:1719..1796Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19764 1720..1796 +
1681462998.0472887-CDS-Ecto-sp13_S_contig19764:2154..25131681462998.0472887-CDS-Ecto-sp13_S_contig19764:2154..2513Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19764 2155..2513 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig19764.6393.1

>prot_Ecto-sp13_S_contig19764.6393.1 ID=prot_Ecto-sp13_S_contig19764.6393.1|Name=mRNA_Ecto-sp13_S_contig19764.6393.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=267bp
MPPATRAYVLLLMVITAVDVSVGEAIDSGNTFSMDWGRTVKGLELWRPLT
SLVYLGPLSMSWLTNVYFLTQHGTRLELVSGTAEQVIFLLVVGSLLLFLG
PLIGMPLLSTSMVAAHTYVSARMDPLGAVQFQFLRIPMWTLPFAQMGAAV
LQAEGSPLAAIPHFVGILCGHVYHFFTVVHPLMGAKRRLGAPGWMKRRLD
GGDNPNFMETPDEPAAPRGRKIGAGKKAANKSKTRGTSKSGSSGSKRGGG
KGRPVPDFPTADGGCS*
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mRNA from alignment at Ecto-sp13_S_contig19764:12..2659+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig19764.6393.1 ID=mRNA_Ecto-sp13_S_contig19764.6393.1|Name=mRNA_Ecto-sp13_S_contig19764.6393.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2648bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19764:12..2659+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCGCGCTCTGCATTGCACTCCATCGCACTGCAGATGCCACCGGCAACCCG AGCTTACGTCCTTTTGCTGATGGTCATCACCGCGGTGGACGTATCCGTCG GTGAGGCCATCGACTCAGGCAACACCTTTTCTATGGATTGGGGAAGGACT GTGAAGGTGACTCGGGGACTCCCATTGAAAGGGAATCGGATATGAACGTT GATCACCGAGATTTGTGTCGGGTGTATTCCACCCAATCGCTCGGCTTTTG GTTACAGATTTAGCTTAAATTTGAGAAATACAGACATGGGAAGTACATCA TCATAGTGCTCTGGCCTTTTGTATTGACGTGTTGCGGGGGCATTGCGCAA CGCTCTCGCCACTCCCTGCTTGAAGCAAGCCGGGGCATACCACCTAGGGT ACCCATTTCAAGGCCATCGTTGTCAGTGATAAGAAAGAAGCTTTCTGGGA GTCAATGAACAGTTCTCATGTTACCGTTGCCACGGAGTGTCGACGTGCGC CCCGTGGAAAATCGACCAAATCACTTTGTTTGTCCCCCTCTTACATTGTC TCTTGAAGGGATTGGAGCTGTGGCGGCCTCTAACATCGCTCGTCTACCTC GGGCCTCTGTCAATGAGCTGGCTGACGAACGTGTACTTTCTGACGCAACA CGGCACTCGGTTGGAACTGGTTAGCGGGACGGCGGAGCAAGTAATATTCC TTCTCGTTGTGGTGAGAAATCCAACGTTGCCCCCAAGGATGAAGTGTCAG ATGGTGCGACAAGGCTGCGCGCACTGATTGCCTGTGTAAGCTTGGAGCAG GTGGCGCCTTGTGTCGGTTGACCTAGTTTACGATGAACATTTTTGGGAGG CTCATATCCTAACACGTTGTAGGTATCAATATTGTGACGGCGGCGCATCC TTCCCGTACCTATCATCGGGAGAGAGTATGTGTTGTTCGTGGTCAAGTTT ACAAAGTTGTACTCATTCGCATGACGTCCAACGGTAGCTTAACCCAAGTA TCCTTGGAACCCCAGCTCAGATGAGGATGCCCTCGCACGCGAAACACACG CCGGTCTTGATCAGTCGTTCGAGAATCCGTTCAGCTTGTCCGATGCACCT ATGCATATTTCAGTCGGCCCTGAACACCGTTGGTGAGCATTCCTAGCGGG ACTTAACCTCCTCGATGGTGCTGCTGCCGGTGTGTTGACAATTCAAGGGC TCGTTGCTGCTGTTCTTGGGGCCATTGATTGGCATGCCGTTGTTATCCAC TTCCATGGTGGCTGCGCATACGTACGTGTCTGCGAGGTGAGCGAATCCAG TCCTGCCAGCAGAAACAGTTTTTCGTGGTTCGTTGAAGAACCGTAGCTTG CAAGTACATGCGCGAATATTTTCTTAAATCATTTAAGTGACTAGGGGGCG GGGTAGGTGTCGATGTTGTGGCTGTGGGGGTGTTTTGGGGGGAGACGTGC TCGAGCGCACGAGGTGTAGACTTCCCAGTTGTGCGCAAAAAATTACCCAT GCGCGCTGGTGGTCTAGAGCCGTATCGCTGCCACCCTTCTCTGCATTTCC CGTGCCTTCGTGCCTCATCATCCTCTCTTTGATTCATTGCGGTAGATGGG TTACCAATCGGAACATTGTAGGCTGCTGCAGTTATCGTTGCTGTGCTGGT GTTTCGATAGCACCGTCATATCTCGCTTGGTTGTTGCTTCTTTTTTTTTC TTTTTCAGGATGGATCCCTTAGGGGCCGTGCAGTTCCAGTTCCTCAGGAT TCCCATGTGGACGCTGCCGTTCGCACAAATGGGAGGTGAGACATGCGGCA GTCGAGCCGACGGTTATCATGCTTGTCGTGACGATGGTCGGACTCAACGA GTCGATTCCTCATAGCCGTGTAATGACGTCTAATCCAACACCTTTTTGGT GCGGAGAAAGGGAGGGTTACACAACTGGAATGGCTTTGGATCCGGTCCAT ACGTAATTCTGTGCTTCGGAAACTCGATGCGAAATCCGATATCAGCACAG AACCATTCCTTGGTTTTCAGTTTTTTGTTCCGAAATTACACTCTCTGGTA GCAGCTGTGGCTTGTTTGCAGAGTACGTGCCCAGTTTTTGACGGAAACCC TCGGGTGCTGCAATGTTTATCGTGTACATGAATGCACCAACAGCCGCCGT GCTCCAGGCGGAGGGGAGCCCGTTGGCCGCCATTCCTCATTTCGTGGGAA TCTTGTGCGGTCACGTGTATCACTTCTTCACTGTGGTGCACCCGCTGATG GGGGCTAAGCGTCGTCTGGGAGCTCCAGGGTGGATGAAAAGGCGCTTGGA CGGCGGGGACAACCCTAATTTCATGGAGACGCCAGATGAGCCCGCAGCAC CACGGGGACGAAAAATTGGCGCCGGCAAAAAGGCGGCCAACAAGAGCAAG ACCAGAGGGACCTCCAAATCGGGATCGAGCGGCAGCAAGAGGGGTGGCGG CAAAGGTAGACCAGTACCAGATTTCCCTACAGCCGACGGGGGTTGTTCGT AGGAGGAGGATGACAGGGTGTCAACCACGTTAGAACGAAGCAATTGTGAG AAAATATGTCCATGGTTGTGCGTAGAGGCGTTCATGTATGGAACAAGAAT CTCAGCTCGACGTTGGCATCTTTTTAGTGCTATTTCTACGGCGTAATG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig19764:12..2659+

>mRNA_Ecto-sp13_S_contig19764.6393.1 ID=mRNA_Ecto-sp13_S_contig19764.6393.1|Name=mRNA_Ecto-sp13_S_contig19764.6393.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=801bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19764:12..2659+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCCACCGGCAACCCGAGCTTACGTCCTTTTGCTGATGGTCATCACCGC
GGTGGACGTATCCGTCGGTGAGGCCATCGACTCAGGCAACACCTTTTCTA
TGGATTGGGGAAGGACTGTGAAGGGATTGGAGCTGTGGCGGCCTCTAACA
TCGCTCGTCTACCTCGGGCCTCTGTCAATGAGCTGGCTGACGAACGTGTA
CTTTCTGACGCAACACGGCACTCGGTTGGAACTGGTTAGCGGGACGGCGG
AGCAAGTAATATTCCTTCTCGTTGTGGGCTCGTTGCTGCTGTTCTTGGGG
CCATTGATTGGCATGCCGTTGTTATCCACTTCCATGGTGGCTGCGCATAC
GTACGTGTCTGCGAGGATGGATCCCTTAGGGGCCGTGCAGTTCCAGTTCC
TCAGGATTCCCATGTGGACGCTGCCGTTCGCACAAATGGGAGCCGCCGTG
CTCCAGGCGGAGGGGAGCCCGTTGGCCGCCATTCCTCATTTCGTGGGAAT
CTTGTGCGGTCACGTGTATCACTTCTTCACTGTGGTGCACCCGCTGATGG
GGGCTAAGCGTCGTCTGGGAGCTCCAGGGTGGATGAAAAGGCGCTTGGAC
GGCGGGGACAACCCTAATTTCATGGAGACGCCAGATGAGCCCGCAGCACC
ACGGGGACGAAAAATTGGCGCCGGCAAAAAGGCGGCCAACAAGAGCAAGA
CCAGAGGGACCTCCAAATCGGGATCGAGCGGCAGCAAGAGGGGTGGCGGC
AAAGGTAGACCAGTACCAGATTTCCCTACAGCCGACGGGGGTTGTTCGTA
G
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