mRNA_Ecto-sp13_S_contig1976.6392.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1976.6392.1
Unique NamemRNA_Ecto-sp13_S_contig1976.6392.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1976.6392.1 vs. uniprot
Match: A0A6H5J694_9PHAE (HORMA domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5J694_9PHAE)

HSP 1 Score: 421 bits (1081), Expect = 3.800e-144
Identity = 214/217 (98.62%), Postives = 214/217 (98.62%), Query Frame = 1 
Query:   94 MTSAAQTSSTENVITLRGSTDVVTDFFYYAVNSVLYQRGVYHPDGFAREAKYGITTLVTTDEALKKYLDNVIKQLKEWLLEKELQRLVLVIVGTDSGDTLERWTFNVHKEERPVLKDGSNAGDQQPRKSQKAITQEIQNVIRQITSSVTFLPLLDEPCSFDLLVYTGNDATVPSGWDDSDPRCIKDSSEVSLRSFSTKIHKVDTVVSYKNKTDEELC 744
            MTS AQ SSTENVITLRGSTDVVTDFFYYAVNSVLYQRGVYHPDGFAREAKYGITTLVTTDEALKKYLDNVIKQLKEWLLEKELQRLVLVIVGTDSGDTLERWTFNVHKEERP LKDGSNAGDQQPRKSQKAITQEIQNVIRQITSSVTFLPLLDEPCSFDLLVYTGNDATVPSGWDDSDPRCIKDSSEVSLRSFSTKIHKVDTVVSYKNKTDEELC
Sbjct:    1 MTSVAQASSTENVITLRGSTDVVTDFFYYAVNSVLYQRGVYHPDGFAREAKYGITTLVTTDEALKKYLDNVIKQLKEWLLEKELQRLVLVIVGTDSGDTLERWTFNVHKEERPALKDGSNAGDQQPRKSQKAITQEIQNVIRQITSSVTFLPLLDEPCSFDLLVYTGNDATVPSGWDDSDPRCIKDSSEVSLRSFSTKIHKVDTVVSYKNKTDEELC 217
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1976.6392.1 vs. uniprot
Match: A0A836CIY9_9STRA (DNA-binding protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CIY9_9STRA)

HSP 1 Score: 245 bits (626), Expect = 2.060e-75
Identity = 123/215 (57.21%), Postives = 159/215 (73.95%), Query Frame = 1 
Query:  112 TSSTENVITLRGSTDVVTDFFYYAVNSVLYQRGVYHPDGFAREAKYGITTLVTTDEALKKYLDNVIKQLK--------EWLLEKELQRLVLVIVGTDSGDTLERWTFNVHKEERPVLKDGSNAGDQQPRKSQKAITQEIQNVIRQITSSVTFLPLLDEPCSFDLLVYTGNDATVPSGWDDSDPRCIKDSSEVSLRSFSTKIHKVDTVVSYKNKTD 732
            T  TE VITL+GSTD+VT+FF++++NS+LYQRG+Y  + F+++ KYG+T + T D  LK YLDNVIKQ+          W+L  E+QRLVLVI G +SG+ LERW F+V  E  P     ++     PRKSQK I  EIQ +IRQIT+SVTFLPLL EPC+FDLLVYT   ATVP  W++SDPR I DSS+V LRSFSTK+HKVDT+V+++N++D
Sbjct:    5 TQETEQVITLKGSTDIVTEFFFFSINSILYQRGIYPAESFSKQQKYGLTMMTTEDMGLKAYLDNVIKQMHGKWPSKLCRWMLRDEVQRLVLVISGVESGEALERWAFHVQGEPAPAPLKEASGNAPAPRKSQKDICNEIQAIIRQITASVTFLPLLSEPCAFDLLVYTNKSATVPIQWEESDPRYIADSSQVKLRSFSTKVHKVDTLVAFRNQSD 219
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1976.6392.1 vs. uniprot
Match: A0A5A8DN77_CAFRO (HORMA domain-containing protein n=3 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8DN77_CAFRO)

HSP 1 Score: 231 bits (589), Expect = 4.840e-70
Identity = 115/216 (53.24%), Postives = 158/216 (73.15%), Query Frame = 1 
Query:   94 MTSAAQTSSTENVITLRGSTDVVTDFFYYAVNSVLYQRGVYHPDGFAREAKYGITTLVTTDEALKKYLDNVIKQLKEWLLEKELQRLVLVIVGTDSGDTLERWTFNVHKEERPVLKDGSNAGDQQPRKSQKAITQEIQNVIRQITSSVTFLPLLDEPCSFDLLVYTGNDATVPSGWDDSDPRCIKDSSEVSLRSFSTKIHKVDTVVSYKNKTDEEL 741
            M +AA  ++T +VITL+GS ++VT+FF +A+NS+L+QRG+Y P+ F + AKYG+  LV+TDE LK YL +V+ Q+  WLLE ++Q+LV+VI G DSG+TLERW FN+  ++  V   G  + D    K  K I QEI  +IRQIT+SV+FLPLL EPC+FDLLVYT  DA VP  W+DSDPR IKD  ++ LRSF+T++HKV   VSY+   D+++
Sbjct:    1 MAAAATETATRSVITLKGSVEIVTEFFGFAINSILFQRGIYPPETFDKVAKYGLPMLVSTDEGLKSYLSHVLTQISGWLLEGKVQKLVVVITGADSGETLERWVFNISPDKAAVT--GGKSSD----KPLKEIQQEIAGIIRQITASVSFLPLLSEPCAFDLLVYTDPDAVVPRAWEDSDPRYIKDGEDMQLRSFTTRVHKVSAAVSYRRGDDDDI 210
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1976.6392.1 vs. uniprot
Match: D2V3A0_NAEGR (Mitotic spindle assembly checkpoint protein MAD2 n=1 Tax=Naegleria gruberi TaxID=5762 RepID=D2V3A0_NAEGR)

HSP 1 Score: 229 bits (584), Expect = 2.070e-69
Identity = 116/210 (55.24%), Postives = 154/210 (73.33%), Query Frame = 1 
Query:   94 MTSAAQTSSTENVITLRGSTDVVTDFFYYAVNSVLYQRGVYHPDGFAREAKYGITTLVTTDEALKKYLDNVIKQLKEWLLEKELQRLVLVIVGTDSGDTLERWTFNVHKEERPVLKDGSNAGDQQPRKSQKAITQEIQNVIRQITSSVTFLPLLDEPCSFDLLVYTGNDATVPSGWDDSDPRCIKDSSEVSLRSFSTKIHKVDTVVSYKN 723
            M+S AQ  +T+N ITL+GST++V +FF Y++NS+LYQRG+Y P+ F + +KYG+  +VTTDE L+KYL  V+ QL  WLL+K++Q+LVLVI   +S + LERW F++  ++     +G N  D       K IT EIQ VIRQIT+SVTFLPLL+EPC+FDLLVYT  D   P  W++SDP+ I  SSEV LRSFST +HKVDT+VSYK+
Sbjct:    1 MSSTAQ--ATKNTITLKGSTEIVAEFFGYSINSILYQRGIYPPETFTKVSKYGLPMMVTTDEQLRKYLSQVLNQLSNWLLQKQVQKLVLVITSVNSSEVLERWQFDLEVDDNITENEGHNTKDL------KQITSEIQAVIRQITASVTFLPLLNEPCTFDLLVYTSKDICTPFAWEESDPKYITQSSEVRLRSFSTSVHKVDTLVSYKD 202
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1976.6392.1 vs. uniprot
Match: A0A2R5FZ78_9STRA (Mitotic spindle assembly checkpoint protein MAD2A n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5FZ78_9STRA)

HSP 1 Score: 229 bits (584), Expect = 2.790e-69
Identity = 116/211 (54.98%), Postives = 153/211 (72.51%), Query Frame = 1 
Query:  106 AQTSSTENVITLRGSTDVVTDFFYYAVNSVLYQRGVYHPDGFAREAKYGITTLVTTDEALKKYLDNVIKQLKEWLLEKELQRLVLVIVGTDSGDTLERWTFNVHKEERPVLKDGSNAGDQQPRKSQKAITQEIQNVIRQITSSVTFLPLLDEPCSFDLLVYTGNDATVPSGWDDSDPRCIKDSSEVSLRSFSTKIHKVDTVVSYKNKTDEE 738
            A   +T N ITL+GST++VT+FF Y++NS+LYQRG+Y P+ F R +KYG+  LVT DE L  YL+ V+KQL+ WL+E  +Q+LVLVI G +S + LERW FNV  ++            Q+PRK    I  EIQ +IRQIT+SVTFLPLL+EPC+FDLLV+T  D  VP  W++SDPR I D+++V LRSF+TKIHKVDT VSY+N  D++
Sbjct:    2 ATAQATSNEITLKGSTEIVTEFFGYSINSILYQRGIYPPETFKRVSKYGLALLVTEDEFLSNYLEQVLKQLESWLMEGTVQKLVLVITGVESKEVLERWVFNVEADKSVTATGNPLEAKQKPRKE---IMNEIQAIIRQITASVTFLPLLNEPCTFDLLVHTDCDTEVPQTWEESDPRHIADATDVKLRSFTTKIHKVDTCVSYRNCVDDD 209
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1976.6392.1 vs. uniprot
Match: A0A7S1G3K4_9STRA (Hypothetical protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1G3K4_9STRA)

HSP 1 Score: 229 bits (583), Expect = 3.800e-69
Identity = 113/216 (52.31%), Postives = 156/216 (72.22%), Query Frame = 1 
Query:   94 MTSAAQTSSTENVITLRGSTDVVTDFFYYAVNSVLYQRGVYHPDGFAREAKYGITTLVTTDEALKKYLDNVIKQLKEWLLEKELQRLVLVIVGTDSGDTLERWTFNVHKEERPVLKDGSNAGDQQPRKSQKAITQEIQNVIRQITSSVTFLPLLDEPCSFDLLVYTGNDATVPSGWDDSDPRCIKDSSEVSLRSFSTKIHKVDTVVSYKNKTDEEL 741
            M +A   + T+N+ITL+GS ++VT+FF +++NS+LYQRG+Y P+ F+  ++YG++ LVTTD+ LK YL  V+ QL  WL   E+Q+LV+VI G DSGD LERW FNV  ++      G         KS K I +EIQ +IRQIT+SV+FLPLLDEPC+FDLLVYT  D  VP  W++SDP+ I +S+EV LRSF+TK+HKVD +V+YK   D+++
Sbjct:    1 MAAAGTATDTKNIITLKGSVEIVTEFFGFSINSILYQRGIYPPESFSAVSQYGLSMLVTTDDGLKGYLSQVLGQLSSWLSRGEVQKLVVVITGVDSGDVLERWVFNVETDKSITASGGG------VEKSAKEIQKEIQAIIRQITASVSFLPLLDEPCTFDLLVYTDADTDVPRSWEESDPQYISNSTEVRLRSFTTKVHKVDAMVAYKTGDDDDV 210
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1976.6392.1 vs. uniprot
Match: A0A6U9WAU7_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A6U9WAU7_9STRA)

HSP 1 Score: 228 bits (582), Expect = 9.320e-69
Identity = 118/222 (53.15%), Postives = 158/222 (71.17%), Query Frame = 1 
Query:  121 TENVITLRGSTDVVTDFFYYAVNSVLYQRGVYHPDGFAREAKYGITTLVTTDEALKKYLDNVIKQLKEWLLEKELQRLVLVIVGTDSGDTLERWTFNV-------------HKEERPVLKDGSNAGD--QQPRKSQKAITQEIQNVIRQITSSVTFLPLLDEPCSFDLLVYTGNDATVPSGWDDSDPRCIKDSSEVSLRSFSTKIHKVDTVVSYKNKTDEEL 741
            T+  ITL+GS D+V++FF+ A+NS+LYQRG+Y P+ F RE+KY +T L TTD+ L KYL  V+ Q++ WLL  ++QRLV+V+ G DSG+TLERW FNV             ++   P + D ++ G+  ++ RK  K I  EIQ +IRQIT+SVTFLPLL+EPCSFDLLVYT  DA VPS W+DSDP  I +S EV LRSF+T +HKVD++V+Y+   D EL
Sbjct:    6 TQTEITLKGSVDIVSEFFFTAINSILYQRGIYQPETFKRESKYDLTVLTTTDDGLLKYLSQVMAQMESWLLNGDVQRLVVVVSGVDSGETLERWQFNVALDDEAGVAGTDENRAPNPNVNDSNSDGNINKKNRKRLKEIHNEIQAIIRQITASVTFLPLLNEPCSFDLLVYTKKDAAVPSKWEDSDPCYIMNSQEVKLRSFTTSVHKVDSMVAYREAEDWEL 227
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1976.6392.1 vs. uniprot
Match: C1N6Z6_MICPC (Predicted protein n=1 Tax=Micromonas pusilla (strain CCMP1545) TaxID=564608 RepID=C1N6Z6_MICPC)

HSP 1 Score: 226 bits (577), Expect = 2.980e-68
Identity = 115/212 (54.25%), Postives = 159/212 (75.00%), Query Frame = 1 
Query:  103 AAQTSSTENVITLRGSTDVVTDFFYYAVNSVLYQRGVYHPDGFAREAKYGITTLVTTDEALKKYLDNVIKQLKEWLLEKELQRLVLVIVGTDSGDTLERWTFNVHKEERPVLKDGSNAGDQQPRKSQKAITQEIQNVIRQITSSVTFLPLLDEPCSFDLLVYTGNDATVPSGWDDSDPRCIKDSSE-VSLRSFSTKIHKVDTVVSYKNKTDE 735
            A+   +T+N ITL+GST++V++FF YAVNS+L+QRG+Y P+ F R+ KYG+  LV+TDE+LK YL NV++Q+ +WL+EK+LQ+LVLV+    S + LERW FN+   E      G++    +  KS+K I QEI  +IRQIT+SVTFLPLL+E C+FDLLVYT  D++VP  W++SDPR I +++E V LRSFST IHKVD +VSYK+  D+
Sbjct:    2 ASTQQATKNSITLKGSTEIVSEFFGYAVNSILFQRGIYPPESFERKHKYGLAMLVSTDESLKAYLVNVLQQINDWLMEKKLQKLVLVVTAVGSKEVLERWVFNI---ETDADASGASGAATRAEKSEKEINQEISAIIRQITASVTFLPLLEEACTFDLLVYTNADSSVPEAWEESDPRYIAENAEQVKLRSFSTSIHKVDGMVSYKSVDDD 210
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1976.6392.1 vs. uniprot
Match: A0A061QUQ8_9CHLO (Mitotic spindle assembly checkpoint protein MAD2 n=1 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061QUQ8_9CHLO)

HSP 1 Score: 226 bits (576), Expect = 4.350e-68
Identity = 113/208 (54.33%), Postives = 156/208 (75.00%), Query Frame = 1 
Query:  109 QTSSTENVITLRGSTDVVTDFFYYAVNSVLYQRGVYHPDGFAREAKYGITTLVTTDEALKKYLDNVIKQLKEWLLEKELQRLVLVIVGTDSGDTLERWTFNVHKEERPVLKDGSNAGDQQPRKSQKAITQEIQNVIRQITSSVTFLPLLDEPCSFDLLVYTGNDATVPSGWDDSDPRCIKDSSEVSLRSFSTKIHKVDTVVSYKNKTD 732
            Q  +T+N ITL+GS ++V++FF YAVNS+LYQRGVY P+ F  + KYG+  ++T+DE L +YL+NV+KQL EWLL ++LQRLVLV+    S + LERW FN+  ++  +     N   ++  KS+K IT EIQ +IRQIT+SVTFLPLLDE CSFDLL+YT  +A VP  W++SD R I +++EV LRSFSTK+HK+D++V+YK + D
Sbjct:    3 QVLATDNTITLKGSAEIVSEFFGYAVNSILYQRGVYPPESFEGQKKYGLNMMITSDEKLTEYLNNVLKQLHEWLLNRQLQRLVLVVSSIQSKEVLERWAFNIETDKEVLSARDPNLVKRE--KSKKEITSEIQAIIRQITASVTFLPLLDESCSFDLLMYTDANADVPQQWEESDARFISNAAEVKLRSFSTKVHKIDSMVTYKMEDD 208
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1976.6392.1 vs. uniprot
Match: A0A7S3M5C9_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3M5C9_9STRA)

HSP 1 Score: 225 bits (574), Expect = 1.120e-67
Identity = 116/209 (55.50%), Postives = 153/209 (73.21%), Query Frame = 1 
Query:   94 MTSAAQTSSTENVITLRGSTDVVTDFFYYAVNSVLYQRGVYHPDGFAREAKYGITTLVTTDEALKKYLDNVIKQLKEWLLEKELQRLVLVIVGTDSGDTLERWTFNVHKEERPVLKDGSNAGDQQPRKSQKAITQEIQNVIRQITSSVTFLPLLDEPCSFDLLVYTGNDATVPSGWDDSDPRCIKDSSEVSLRSFSTKIHKVDTVVSYK 720
            M+S AQ + T NVITL+GST +V +FF Y+VNS+LYQRG+Y P+ F R   YG+T +VTTDE L  Y++N+++QL+ WL+   +Q+L+LV+ G++SG+TLERW F+V  + + V  D + A      K  K +TQEIQ +IRQIT+SVTFLPLL+EP  FDLLVY    ATVP  W+DSDP  I +S +V LRSF TKIHKVD +VSYK
Sbjct:    9 MSSVAQETITSNVITLKGSTAIVKEFFNYSVNSILYQRGIYAPESFNRVKNYGLTMMVTTDETLSAYMNNILRQLEVWLMNGSVQKLILVVKGSESGETLERWVFDVECKLKDV--DSAEAAAAISDKPAKEVTQEIQAIIRQITASVTFLPLLNEPACFDLLVYADKQATVPVTWEDSDPCFIANSEQVKLRSFDTKIHKVDLMVSYK 215
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1976.6392.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5J694_9PHAE3.800e-14498.62HORMA domain-containing protein n=2 Tax=Ectocarpus... [more]
A0A836CIY9_9STRA2.060e-7557.21DNA-binding protein n=1 Tax=Tribonema minus TaxID=... [more]
A0A5A8DN77_CAFRO4.840e-7053.24HORMA domain-containing protein n=3 Tax=Cafeteria ... [more]
D2V3A0_NAEGR2.070e-6955.24Mitotic spindle assembly checkpoint protein MAD2 n... [more]
A0A2R5FZ78_9STRA2.790e-6954.98Mitotic spindle assembly checkpoint protein MAD2A ... [more]
A0A7S1G3K4_9STRA3.800e-6952.31Hypothetical protein n=1 Tax=Bicosoecida sp. CB-20... [more]
A0A6U9WAU7_9STRA9.320e-6953.15Hypothetical protein n=1 Tax=Pseudo-nitzschia aust... [more]
C1N6Z6_MICPC2.980e-6854.25Predicted protein n=1 Tax=Micromonas pusilla (stra... [more]
A0A061QUQ8_9CHLO4.350e-6854.33Mitotic spindle assembly checkpoint protein MAD2 n... [more]
A0A7S3M5C9_9STRA1.120e-6755.50Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1976contigEcto-sp13_S_contig1976:9285..15127 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score427.6
Seed ortholog evalue3.6e-117
Seed eggNOG ortholog2880.D8LIH5
Preferred nameMAD2L1
Model size1470
KEGG koko:K02537
KEGG Pathwayko04110,ko04111,ko04113,ko04114,ko04914,ko05166,map04110,map04111,map04113,map04114,map04914,map05166
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000070,GO:0000075,GO:0000228,GO:0000278,GO:0000280,GO:0000775,GO:0000776,GO:0000777,GO:0000778,GO:0000779,GO:0000780,GO:0000785,GO:0000790,GO:0000793,GO:0000794,GO:0000819,GO:0000922,GO:0003006,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005654,GO:0005694,GO:0005737,GO:0005813,GO:0005815,GO:0005816,GO:0005819,GO:0005828,GO:0005829,GO:0005856,GO:0005874,GO:0005876,GO:0006508,GO:0006511,GO:0006807,GO:0006950,GO:0006979,GO:0006996,GO:0007049,GO:0007059,GO:0007088,GO:0007093,GO:0007094,GO:0007154,GO:0007165,GO:0007275,GO:0007276,GO:0007281,GO:0007283,GO:0007346,GO:0008150,GO:0008152,GO:0008356,GO:0009056,GO:0009057,GO:0009405,GO:0009628,GO:0009790,GO:0009792,GO:0009892,GO:0009894,GO:0009895,GO:0009987,GO:0010369,GO:0010498,GO:0010564,GO:0010605,GO:0010639,GO:0010941,GO:0010948,GO:0010965,GO:0010997,GO:0012505,GO:0015630,GO:0016043,GO:0017145,GO:0019222,GO:0019538,GO:0019941,GO:0019953,GO:0022402,GO:0022412,GO:0022414,GO:0023052,GO:0030071,GO:0030154,GO:0030163,GO:0030587,GO:0031145,GO:0031156,GO:0031323,GO:0031324,GO:0031396,GO:0031397,GO:0031399,GO:0031400,GO:0031570,GO:0031577,GO:0031967,GO:0031974,GO:0031975,GO:0031981,GO:0032268,GO:0032269,GO:0032465,GO:0032466,GO:0032501,GO:0032502,GO:0032504,GO:0032886,GO:0032954,GO:0032956,GO:0032970,GO:0032991,GO:0033043,GO:0033044,GO:0033045,GO:0033046,GO:0033047,GO:0033048,GO:0033313,GO:0033316,GO:0033554,GO:0033597,GO:0034059,GO:0034399,GO:0034599,GO:0035556,GO:0035690,GO:0036293,GO:0040007,GO:0040020,GO:0042078,GO:0042176,GO:0042177,GO:0042221,GO:0042493,GO:0042802,GO:0042803,GO:0042981,GO:0043066,GO:0043067,GO:0043069,GO:0043086,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043632,GO:0043900,GO:0044087,GO:0044092,GO:0044110,GO:0044116,GO:0044117,GO:0044119,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044403,GO:0044419,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044430,GO:0044444,GO:0044446,GO:0044454,GO:0044464,GO:0044703,GO:0044732,GO:0044774,GO:0044779,GO:0044877,GO:0045120,GO:0045595,GO:0045786,GO:0045787,GO:0045835,GO:0045839,GO:0045841,GO:0045930,GO:0045931,GO:0046983,GO:0048133,GO:0048232,GO:0048285,GO:0048468,GO:0048471,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048609,GO:0048856,GO:0048869,GO:0050789,GO:0050790,GO:0050793,GO:0050794,GO:0050896,GO:0051128,GO:0051129,GO:0051171,GO:0051172,GO:0051233,GO:0051246,GO:0051248,GO:0051276,GO:0051301,GO:0051302,GO:0051312,GO:0051321,GO:0051338,GO:0051348,GO:0051438,GO:0051444,GO:0051445,GO:0051447,GO:0051493,GO:0051494,GO:0051603,GO:0051703,GO:0051704,GO:0051716,GO:0051726,GO:0051782,GO:0051783,GO:0051784,GO:0051983,GO:0051985,GO:0060236,GO:0060255,GO:0060548,GO:0060631,GO:0065007,GO:0065009,GO:0070013,GO:0070482,GO:0070507,GO:0070887,GO:0071173,GO:0071174,GO:0071704,GO:0071840,GO:0072395,GO:0072413,GO:0072416,GO:0072477,GO:0072480,GO:0072486,GO:0072686,GO:0080090,GO:0090068,GO:0090169,GO:0090224,GO:0090231,GO:0090232,GO:0090266,GO:0090267,GO:0090702,GO:0098687,GO:0098722,GO:0098728,GO:0098813,GO:0099080,GO:0099081,GO:0099120,GO:0099134,GO:0099135,GO:0099136,GO:0099139,GO:0099512,GO:0099513,GO:0110020,GO:0110029,GO:0140014,GO:1901261,GO:1901564,GO:1901565,GO:1901575,GO:1901673,GO:1901976,GO:1901978,GO:1901987,GO:1901988,GO:1901990,GO:1901991,GO:1901993,GO:1901994,GO:1902099,GO:1902100,GO:1902102,GO:1902103,GO:1902115,GO:1902412,GO:1902413,GO:1903046,GO:1903047,GO:1903320,GO:1903321,GO:1903436,GO:1903437,GO:1903499,GO:1903500,GO:1903504,GO:1904666,GO:1904667,GO:1905132,GO:1905133,GO:1905318,GO:1905818,GO:1905819,GO:1990047,GO:1990492,GO:1990498,GO:2000241,GO:2000242,GO:2000431,GO:2000432,GO:2000816,GO:2001251
Exons7
EggNOG free text desc.spindle assembly checkpoint
EggNOG OGsKOG3285@1,KOG3285@2759
Ec32 ortholog descriptionHORMA domain protein
Ec32 orthologEc-18_003640.1
Cds size654
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03036
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1976.6392.1prot_Ecto-sp13_S_contig1976.6392.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1976 9378..14404 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462997.8860166-UTR-Ecto-sp13_S_contig1976:9284..93771681462997.8860166-UTR-Ecto-sp13_S_contig1976:9284..9377Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1976 9285..9377 +
1681462997.9586236-UTR-Ecto-sp13_S_contig1976:14404..151271681462997.9586236-UTR-Ecto-sp13_S_contig1976:14404..15127Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1976 14405..15127 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462997.8969994-CDS-Ecto-sp13_S_contig1976:9377..93801681462997.8969994-CDS-Ecto-sp13_S_contig1976:9377..9380Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1976 9378..9380 +
1681462997.9054267-CDS-Ecto-sp13_S_contig1976:10460..105551681462997.9054267-CDS-Ecto-sp13_S_contig1976:10460..10555Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1976 10461..10555 +
1681462997.9137254-CDS-Ecto-sp13_S_contig1976:11256..113871681462997.9137254-CDS-Ecto-sp13_S_contig1976:11256..11387Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1976 11257..11387 +
1681462997.9233282-CDS-Ecto-sp13_S_contig1976:12054..121811681462997.9233282-CDS-Ecto-sp13_S_contig1976:12054..12181Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1976 12055..12181 +
1681462997.9315107-CDS-Ecto-sp13_S_contig1976:12842..129931681462997.9315107-CDS-Ecto-sp13_S_contig1976:12842..12993Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1976 12843..12993 +
1681462997.9397564-CDS-Ecto-sp13_S_contig1976:13578..136651681462997.9397564-CDS-Ecto-sp13_S_contig1976:13578..13665Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1976 13579..13665 +
1681462997.9480803-CDS-Ecto-sp13_S_contig1976:14344..144041681462997.9480803-CDS-Ecto-sp13_S_contig1976:14344..14404Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1976 14345..14404 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1976.6392.1

>prot_Ecto-sp13_S_contig1976.6392.1 ID=prot_Ecto-sp13_S_contig1976.6392.1|Name=mRNA_Ecto-sp13_S_contig1976.6392.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=218bp
MTSAAQTSSTENVITLRGSTDVVTDFFYYAVNSVLYQRGVYHPDGFAREA
KYGITTLVTTDEALKKYLDNVIKQLKEWLLEKELQRLVLVIVGTDSGDTL
ERWTFNVHKEERPVLKDGSNAGDQQPRKSQKAITQEIQNVIRQITSSVTF
LPLLDEPCSFDLLVYTGNDATVPSGWDDSDPRCIKDSSEVSLRSFSTKIH
KVDTVVSYKNKTDEELC*
back to top

mRNA from alignment at Ecto-sp13_S_contig1976:9285..15127+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1976.6392.1 ID=mRNA_Ecto-sp13_S_contig1976.6392.1|Name=mRNA_Ecto-sp13_S_contig1976.6392.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=5843bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1976:9285..15127+ (Ectocarpus species13 EcNAP12_S_4_19m)
CGGGAACGAGAGCCACAGAAGGACAATAACCGCCGAAATAGGAAAGGGAG
CATAGGAGAGAAGTCTAGCACCGAGTTCATCAGCAGAATAAGCATGGTGA
GTTCTATTGATTCGTATTTCATCTGCTGTTCACGAGGAACATGTGCTATG
GTGCTCGCTCTTGCCTCGGTACAGCAGCATGGCTGCGAGGTACGTAGCCT
ACGGCATGTTGGCCACCTAGCAGCCGCTGCTCATCGGCTACTGCTTGCGC
TCGCTCCTGCAGAGACACAGGCTCGAGCGCTGTCCTCTTCGCCTGCCTGA
CAGTACTCGACATTCACGTGCACGTGTGAGAGAGGGAGTGCATGCTCTCT
ACATAATCAGAGTGCTAGCTCGGCAAGCGGTGTGATGAGGTTCGTGTACC
AGAGAGAGCGAGAGATAGAGGACAGAGTTTTCAGGAGGCCGTGCCCGCAC
GATCAGCACGAACGTGCAGCTACTCTTGTCATTGTCCTGAGGTGTAAGCC
GGAGAGGCGTTTCGTGCGGCGCACGTGTATATATACGTATTCCAGCAGTA
GACTGCGGTACATGGGTATCAGCGCTTTGCGCGCCAAAACGACACTTTCG
CGCAAAAAATGAAAATGACGGAACGCCGTGCCGGAGGTTGGGGTGGTGTG
TGGCCCTCCGGGGGTGAAGCGCAGCAGCGGTGACAACACTTTCTCGCGTT
AGTAAACACAGAGTAAAGCGCATATCGAGATAGGGTGGGACGCACCCACT
CTGCTGAAGTACTATTTAGAGCAAAAACAAAGCAAGAAGTAACTCCGTTC
CTGTAGTACTGAATTTGTAAAAAGTCGATGGAGATGCACCACAGAGGTGT
CGCCTTCGCCAATGAAGTTGTCACGCCTTTCCAAAATTTTGCACGAAGCA
CAAAGCAGTCAACCGCGGTGCCGTGTCACCCTCGCCCCACATGGAACAAC
AGAGCAACAACGCGTGCACGGTCTCCTTTCACGTTGTTCGACTCGGCCGC
ATTTGCCCTCCCGGCACACTCGAAAAACAATCAGCGTTCACCTCACGACT
ACTAATATCGTCTACACCCGAGACTGCTGTGCGCCCCCACCTGCACTACC
GCTACAGTCCAAACACGGGACTCACGTACGTCCCTACCTCTACTATTTGT
TGTTGCTGCTGTGGGCATCGCGCCAGACTTCTGCAGCACAGACCTCGAGC
ACGGAGAATGTGATCACGCTGCGAGGGTCGACGGATGTCGTCACCGACTT
CTTCTACTACGCCGTCAACAGGTGGGTCAGGAGGGGTAAGGCAGTGAAGG
TCAACACGCAAGCTTGAGTGCTGGGCGACGTGGATACGACTGCTGTGTGC
TGTGGCCTACTCTCGAAGCTGTTGACCCCCATGTGCTTTTTGAATGGCGC
AGGCACTGAACCTGCTGGTGCTTCGGCTACTGCTGCTGCGCCCGTGCCTC
ATCTTTTCAACACACGATCGAGCGGTCGGTGGGATTCATCTCCCGACGAT
GGCAGCGTTTCCCCTCACTCTCATTCGTCTTGGGTTGTTGCGTGCCGATA
CCAACACACCTATTGTCTGTCCCAGTCGCGCATACAACCAACTTCCATCG
GGTTTTGCAGCCTCGGGCTTGGTATCTAACCCGTTTGCTACGTGTTAAAC
AACCAAAAATCGAAAAATAAATGTCGGGTTACGAGCCGAAGCGTGCGTTT
TCCACCCCATATGCAACATTATCAGCAGTTGCTTTGCCGAACCCTTGCGT
ATTACTCTGATTTGGCCAAAAGAGGGGGAACTTGGAAAAGAAGAACAGTC
GTGCTTGTAATTTATTTATAAAACTTCTTCATGCGGAATGAGGGAACCTT
CGATTTTTCTCGACAGACAGACGTTTGGGGATTGTACATCAATTGTATGA
TAGGAATCTCCACATTCATCTGGCTTGTTCTGCTTTGCGACCCCCCCCCC
CCCCCCCGTTCGAGGACCGCAGCGTGCTTTACCAGAGAGGGGTTTACCAC
CCCGACGGTTTCGCTCGCGAGGCCAAATACGGCATCACGACCCTCGTCAC
GACCGATGAAGCCCTGAAGAAATACCTCGACAACGTCATCAAGCAGCTCA
AGGGTAAGCAAAGGACCTCGACAATGTCACCAAGCAGCTCTTCGGCAAGC
AATAAGTATCTCGATCACGTCGCTGAGCAGCTCAAGGACGAGAACGCTAA
GCGGGAAGCTTCATGAGGAACTAGACGTGGAGATGGGAAGAAGCTGAACG
CCCTTCTTTCTCCGCATAGATCGCACGAAAGTGCTACAGTACCAAGGAGA
AACCTGTACGAAAAGGAAAGAAAAAAAAACTCATCAGACGGTCAGATATT
CCAAACGCAAGACGCGCCGAGATGTTGGTGGGAACACTCAGGATCAGCGG
AGCCCCCGAAACCACTCTTGACGACAATCGCGGCATAGACTCCACCAAGT
AGATGGGCGGTATACGTGAACGCCTGTGCAGGAAGAAACAAGGAAAACTA
GCGCGTTTTTTTTATGCATGAAAGCGCGCAAGAAGGGTTATCGGACAAGA
CCGAGCGTTGAATGTATCAACCTCTCCAAACCTGGCCCAAGACCTACTTC
GGACCCCCCCCCCCGGGAGAATGTTGTTCCGTGCAGGATTGTAGGTGTCC
AACCCCTCACCTTTTCGCTCACGACGTTTTTCCTGCACGAAAGATCAGAT
TCATGACGAAAGGGAAAAAAAAAAAAAAATCACAAACCACGCTGTGCTGT
GCGTGTTGTTGTCGTGCCAGAATGGTTGTTGGAGAAAGAGCTGCAGCGCC
TGGTACTCGTGATAGTCGGCACGGACTCGGGCGACACGCTTGAGCGGTGG
ACGTTCAACGTGCACAAGGAAGAGAGGCCCGTCCTCAAAGACGGCAGGTA
AAGAAAATGTGCCGTTCCGCCTATGTTTTGTCCTGTTGTTTTCGTTCAAC
ATTCCAAGTGGTCGTTCACAGTTTTTTCGTGGTCGCTCATGGTTTTTTCG
TGGTTGGTGCGAAGGCCGTGTGCTTGTAATTTCTGGAGGCATACCAAACC
GATCGCCCAGGTGCCGTAGTTGGTAACCTCAACTGTGTTATGTATGACTG
TTGTATGGGGTCGACTCTCCGAAATGGTGATACTCGTGGTCTGGTAGCGG
AAAACGAGCAGCAGCTGCGAGTATGCACATGCAGGAGGGTAGAGGCCACT
GGTCCGAATGCGGAGGGAAAAGTGTCGTGTGCTTGCCTTTCTCCTTGGTG
ACCCCGACTGGCGGCTTTAAATGTACCCCAAAACGGGTAGAGACTGGTGG
CCAGACTATTGTAGAAGCGATCAAGCAAGAGAGGTACGAAAAACATGGCA
GCTCTGATATAGCGCGTAGAGACCGACGCCCAGACTAGAAGGGACGAAGC
AAAAGAGGTACGAAATACATGGTAGCTCTGATGTCTCCAATCCAAAAGGA
CCAAACGTTGGTTGTCGTTACATGTGCTCGTGGTGGTTGTTGCATGCACA
CGATGACCACCAACTTAACGACGACAACAATGTCGACGGCGGATTGTTAC
AATCGCAGCAACGCCGGCGACCAGCAGCCGCGCAAGTCGCAGAAGGCCAT
CACGCAGGAGATCCAGAACGTTATCCGGCAGATCACGAGCAGCGTCACCT
TCCTGCCTCTCTTGGACGAGCCCTGCTCCTTCGACCTCTTGGTCTACACC
GGCAACGACGTGAGAGAGAGAGAGAGAGAGAGAGGAAGGGGGGGGGGGGA
GAAAGAAAGGGAGCAAGAGAGGGAGCAAGAGAGGGAGTAAGGAAGAGAGA
GATGGAGTAAGGAAGAGAGAGAGAGAGAGAGAGAGTGCGACAGGGAGAGA
GAGAGAGGAAGAGAAAGAGAGGAAGAGAAAGAGCGAGAAAATCAAATCAG
CCATGGTTCTTTTTATTGGCAAGGGGTTTTGCTCCGTATCGGTTGTAAAG
TAGGAGTTCGTGTATACAACGTCGCAGAATGAAGCCGTGCTCTGTATTGT
GCGTGCCTGTGCGCGCGCGTCATTTTTTTGTGCCCCCGGGCTGTGTCGTA
CTGTTTTCATTCGTTCTGGAGATCAATTTCCCACCTTTCGGTATTTTCTC
TGGATGAAGAAGGCGGAGGTCACATGAGGTAGCAGGCATGGGTTGTGTTG
AATGCCTGTCAAATGGAACATCCGACCGACTGACTCGTGATTTTCATGGA
TACTCCGTGCTTGCTTGCCTCGGGTAGCAACCAATCCCATCATTCCTTGC
ACAAACCTTTTTCTGTCTTTCTCGTTTACCGCTATGTGGTACAGGCTACC
GTACCGTCCGGGTGGGACGATTCTGACCCTCGATGCATCAAAGACTCGTC
TGAGGTTTCCCTTCGCTCCTTCTCCACGAAGGTAAAACACAAAAAAACGC
TATCCTCTCCACTAGATTCCCCTGTTATGTATTAGGAAAAATATTTGCGT
GTTTTGCGTCTTCATGTCTAAACGGTCGATGTGAGGAATGCTCTCGCTCA
TCACCAACGTCCACCAACCTTCAAGTGGTGTTTTTGATGGTTCTCGACAG
GAGGGATAGCCTGACCGATGCCGTTTCGTTTGTAAGGATAGCCGTTTGCA
GTTTTCGATGGAGCCGATATCAGGGATCACCTACATCTGCGAGAGTTATT
CTGCATCCGAGAGCGAGACCTTGTGAAACGGAAACTGTCGGTTTGGAAAG
CGAAGGCTGCAGGGTGAATGGATATGTATGACGACGTGGCCAGCAGATGG
AATGGCTGTTGTAAGAATTGATGAACGTGCGCGAGTATAACGCGCACGGG
TAGTCTCGAGGAAAAGAGCTTTACCCCCCCCCCCCCCCCCCCCCCCCCCC
CCCCCCGTCCCTTCCCCCTCGGTTCTCTCGGCCAGTCCCCCGGGGGGGAA
CCGGTGGCTCCTCCCATGACCAANNNNNNNNNNTTGTAAGAGATGCGGAA
GGTGCGGCGATAAAGCCCGCACCGGGGGTTAGGAGAAAAACACGTTTCCC
CCCCCCCCCCCCCCCCCCATCGCGTACCCGTCGTCCTTTCCCCTTGGTTT
CTCTCGGCAGATCCACAAGGTGGACACGGTCGTCTCCTACAAGAACAAGA
CCGACGAGGAGCTGTGCTAACGGTTTCGCTTCTAGGATTCAAATGACCTG
TGATATTTATCTTTGGTTTATCGTCAAGCCGCAATCAGCAGTTGAGGGAA
ACAGATAAATACACGGGTGCGTTTTGTGTTCAACATAAGCTGTGGTGGCA
CAAAGCGAACCTACATTTTTTTTTTGGGATGATAAGTGCTAATCACCCAA
GGATTGGCGAGTGGGAGGCCTTGCTGGTGTGAAAGGGTTCAAAATTTCTT
CCGAGTGGGTGAAACGGGGGGGGGCGATTTCGAATAAGAGCAGCGTCAAG
TTTTCTCTTACTCAGGTACAGTGGAGGGAGGAGGAGGGAGTTGGGTATGT
TATTTCGGTGGTCAATGGTCTGGTGCATGTTTCGAGATGTATTTCTATTT
TCGTTATCAGTCGTTTACGCTTGTGTTGAGAGAGTCAAGTCGATCCACCA
CCCAGCGAAACCTGTTTTCTGTATGTTTTTCCGCGTTTCAGGTTGTAGTG
TTAGGGTTGAGGGATTCAAGTCGGCCCACAATTCGCAGGCGATATCTGTT
TTTTCTACGATTTTAACAAAGGGTGTGGACTACTATGGATATACCCTTTG
CGGCAACCTTTTGTATTTTGTCTGATGCATGTCAATTTGTTTTTCTGTGC
ATTACACGTTTCACCGGTTTCGGACAGGGAACTAAGAAAATACCCAGCCG
GGTGCTTGATGTGGTCAATCTTTCGGCAAACGTATTGATGTAC
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1976:9285..15127+

>mRNA_Ecto-sp13_S_contig1976.6392.1 ID=mRNA_Ecto-sp13_S_contig1976.6392.1|Name=mRNA_Ecto-sp13_S_contig1976.6392.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=654bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1976:9285..15127+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGACTTCTGCAGCACAGACCTCGAGCACGGAGAATGTGATCACGCTGCG
AGGGTCGACGGATGTCGTCACCGACTTCTTCTACTACGCCGTCAACAGCG
TGCTTTACCAGAGAGGGGTTTACCACCCCGACGGTTTCGCTCGCGAGGCC
AAATACGGCATCACGACCCTCGTCACGACCGATGAAGCCCTGAAGAAATA
CCTCGACAACGTCATCAAGCAGCTCAAGGAATGGTTGTTGGAGAAAGAGC
TGCAGCGCCTGGTACTCGTGATAGTCGGCACGGACTCGGGCGACACGCTT
GAGCGGTGGACGTTCAACGTGCACAAGGAAGAGAGGCCCGTCCTCAAAGA
CGGCAGCAACGCCGGCGACCAGCAGCCGCGCAAGTCGCAGAAGGCCATCA
CGCAGGAGATCCAGAACGTTATCCGGCAGATCACGAGCAGCGTCACCTTC
CTGCCTCTCTTGGACGAGCCCTGCTCCTTCGACCTCTTGGTCTACACCGG
CAACGACGCTACCGTACCGTCCGGGTGGGACGATTCTGACCCTCGATGCA
TCAAAGACTCGTCTGAGGTTTCCCTTCGCTCCTTCTCCACGAAGATCCAC
AAGGTGGACACGGTCGTCTCCTACAAGAACAAGACCGACGAGGAGCTGTG
CTAA
back to top