mRNA_Ecto-sp13_S_contig19759.6390.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig19759.6390.1
Unique NamemRNA_Ecto-sp13_S_contig19759.6390.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig19759.6390.1 vs. uniprot
Match: D8LGV9_ECTSI (FHA domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGV9_ECTSI)

HSP 1 Score: 496 bits (1278), Expect = 8.470e-166
Identity = 304/335 (90.75%), Postives = 307/335 (91.64%), Query Frame = 1 
Query:    1 DLEVSKNRRDGVKGEARFIGTNLKARSALMKAKHKALVLNKELMELMQYLDVPVGNILADSQGAPSLGDPTVDDAIANGGCGSHGSPDPNGNAXXXXXXXXXXXNSGVDSPAPSLGNEMDEVERLDATQSNSPSSGATGAEGEGTADRGPGEEDGGVATDAGAGGGDADXXXXXXXXXEEMHNTQGDE-RGSEEAPEARAQPNGTAEVCADEDQTAGRVDGGDSTRDEGNENDEEQGQLL-----SGPAAAAPHGAVRLDQGFGDEDETEFTVPPLDFGRGTRGGPGEGVDQAGGGGGALVSAAPREDNGVAEQETELLTVSELEQQMSKLEDAA 987
            DLEVSKNRRDGVKGEARFIGTNLK      KAK KALVLNKELMELMQYLDVPVGN+LADSQGAPSLGDPTVDDAIANGGCGSHGSPDPNGN XXXXXXXXXXXNSG DSPA SLGNEMDEVERLDATQ N PSSGAT AEGEGTA+ G  EEDGGVA DAGAGGGD  XXXXXXXXXEEMHNTQGDE RGSEEAP+ARAQPNGTAEVCADEDQTAGR DGGDSTRDEGNENDEEQGQLL     SGPAAAAPHGAVRLDQGFGDEDETEFTVPPLDFGRGTRGGP EGVDQAGGGGG LVSAAPREDNGVAEQETELLTVSELEQQMSKLEDAA
Sbjct:  487 DLEVSKNRRDGVKGEARFIGTNLK------KAKQKALVLNKELMELMQYLDVPVGNMLADSQGAPSLGDPTVDDAIANGGCGSHGSPDPNGNXXXXXXXXXXXXNSGADSPARSLGNEMDEVERLDATQGNGPSSGATDAEGEGTANGGSCEEDGGVAPDAGAGGGDXXXXXXXXXXXEEMHNTQGDEERGSEEAPKARAQPNGTAEVCADEDQTAGRDDGGDSTRDEGNENDEEQGQLLLEVSLSGPAAAAPHGAVRLDQGFGDEDETEFTVPPLDFGRGTRGGPAEGVDQAGGGGGTLVSAAPREDNGVAEQETELLTVSELEQQMSKLEDAA 815
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BLAST of mRNA_Ecto-sp13_S_contig19759.6390.1 vs. uniprot
Match: A0A6H5KXX6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXX6_9PHAE)

HSP 1 Score: 346 bits (887), Expect = 5.510e-110
Identity = 239/383 (62.40%), Postives = 249/383 (65.01%), Query Frame = 1 
Query:   94 AKHKALVLNKELMELMQYLDVPVGNILADSQGAPSLGDPTVDDAIANGGCGSHGSPDPNGNAXXXXXXXXXXXNSGVDSPAPSLGNEMDEVERLDATQSNSPSSGATGAEGEGTADRGPGEEDGGVA-------------------TDAGAGGGDADXXXXXXXXXEEMHNTQGDERGS----------------EEAPEARAQPNGTAEVCADEDQTAGRVDGGDSTRDEGNENDEEQGQLL--------------------------------------------------SGPAAAAPHGAVRLDQGFGDEDETEFTVPPLDFGRGTRGGPGEGVDQAGGGGGALVSAAPREDNGVAEQETELLTVSELEQQMSKLEDAA 987
            AK KALVLNKELMELMQYLDVPVGNILADSQGAPSLGDP+VDDAIANGGCGSHGSPDPNG  XXXXXXXXXXXNSG +SPA SLGNEMDEVERLDATQ  SPS  ATGA   G   +G G   G                       DAGAGG   D               QGD+  +                +EAP+ARAQ NGTAEVCADEDQTAGRVDG DSTRDEGNENDEEQGQLL                                                  SGPAAAAPHGAVRLDQGFGDEDETEF+VPPLDFGRGTRGGP EGV QAGGGGG LVS APREDNGVAEQETELLTVSELEQQMSK+EDA+
Sbjct:  231 AKQKALVLNKELMELMQYLDVPVGNILADSQGAPSLGDPSVDDAIANGGCGSHGSPDPNGXXXXXXXXXXXXXNSGTESPAHSLGNEMDEVERLDATQV-SPS--ATGAAAAGGGGKGNGPSSGATGXXXXXXXXXXXXXXXXXXXADAGAGGAGVDE--------------QGDDEDTXXXXXXXXXXXXXXXXKEAPKARAQLNGTAEVCADEDQTAGRVDGDDSTRDEGNENDEEQGQLLLGMERESGXXXXXXXXXGASTFGRQPLPQPASLLPPSAADDPSAGQEVSLSGPAAAAPHGAVRLDQGFGDEDETEFSVPPLDFGRGTRGGPAEGVGQAGGGGGTLVSTAPREDNGVAEQETELLTVSELEQQMSKVEDAS 596
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig19759.6390.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LGV9_ECTSI8.470e-16690.75FHA domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5KXX6_9PHAE5.510e-11062.40Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig19759contigEcto-sp13_S_contig19759:2..3027 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size987
Hectar predicted targeting categoryother localisation
Exons6
Cds size987
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig19759.6390.1prot_Ecto-sp13_S_contig19759.6390.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig19759 2..3027 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462997.671886-CDS-Ecto-sp13_S_contig19759:1..911681462997.671886-CDS-Ecto-sp13_S_contig19759:1..91Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19759 2..91 +
1681462997.6821742-CDS-Ecto-sp13_S_contig19759:563..6751681462997.6821742-CDS-Ecto-sp13_S_contig19759:563..675Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19759 564..675 +
1681462997.6903043-CDS-Ecto-sp13_S_contig19759:1557..17421681462997.6903043-CDS-Ecto-sp13_S_contig19759:1557..1742Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19759 1558..1742 +
1681462997.7005408-CDS-Ecto-sp13_S_contig19759:1790..21161681462997.7005408-CDS-Ecto-sp13_S_contig19759:1790..2116Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19759 1791..2116 +
1681462997.7103105-CDS-Ecto-sp13_S_contig19759:2260..24661681462997.7103105-CDS-Ecto-sp13_S_contig19759:2260..2466Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19759 2261..2466 +
1681462997.7240112-CDS-Ecto-sp13_S_contig19759:2959..30271681462997.7240112-CDS-Ecto-sp13_S_contig19759:2959..3027Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19759 2960..3027 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig19759.6390.1

>prot_Ecto-sp13_S_contig19759.6390.1 ID=prot_Ecto-sp13_S_contig19759.6390.1|Name=mRNA_Ecto-sp13_S_contig19759.6390.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=329bp
DLEVSKNRRDGVKGEARFIGTNLKARSALMKAKHKALVLNKELMELMQYL
DVPVGNILADSQGAPSLGDPTVDDAIANGGCGSHGSPDPNGNASGHGLRP
ADGNNSGVDSPAPSLGNEMDEVERLDATQSNSPSSGATGAEGEGTADRGP
GEEDGGVATDAGAGGGDADGQDDDEDTDEEMHNTQGDERGSEEAPEARAQ
PNGTAEVCADEDQTAGRVDGGDSTRDEGNENDEEQGQLLSGPAAAAPHGA
VRLDQGFGDEDETEFTVPPLDFGRGTRGGPGEGVDQAGGGGGALVSAAPR
EDNGVAEQETELLTVSELEQQMSKLEDAA
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mRNA from alignment at Ecto-sp13_S_contig19759:2..3027+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig19759.6390.1 ID=mRNA_Ecto-sp13_S_contig19759.6390.1|Name=mRNA_Ecto-sp13_S_contig19759.6390.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3026bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19759:2..3027+ (Ectocarpus species13 EcNAP12_S_4_19m)
GACCTGGAAGTCAGCAAGAATCGGAGAGACGGCGTCAAGGGGGAGGCTCG
TTTCATCGGCACCAACTTGAAGGCAAGATCCGCGCTTATGGTTTCGTGGC
TGATGCTCTACACACACTCGTCACGTGCGCTACGCACGCTCTGTAGGTAC
TCCACGCACGCTCTTTGCGAGCTCTACGGGCTCTCTTGACGTGCTATACG
CACGCTCTTTTCGTGCGCGTGGACTTTGCTTCGCCTTCAAGACTACCTTG
CTGCCTTGGTATGCGCGGGTCTGCCTATTCTCTCGTATATCGTTTGCTTC
ATGTGTCTGGCCGAAATAGTAGTCCGTTAAGCAGTGTCCTCCCGCGGTGG
TTTCCCGCACCGTGTTTTCAAGTTATCCCGCACCGTGGGTCCAAATTTTC
CCCCGTCACTACAGGAAAGCCAGGCCTCTTGAATACCGAACGGCGTACCA
TCGCGCTCCTCGCAACCTGTGTACCCACGTCTCCCAACCATTTTTTTTTT
CCTTCCCGAACGGCCGTTCGCTGGAAACCCACCCCTCTGGCGGTGTGTTT
CCCCTTTTGCAGAAAGCGAAGCATAAGGCGCTAGTCTTGAACAAGGAGCT
GATGGAGCTGATGCAGTACCTGGACGTCCCGGTGGGCAACATATTAGCCG
ACAGCCAGGGCGCACCCAGCCTGGGTGAGATTGTTGGGGAGCGGTGGGTT
GCCTCTCGGACAAGCGCGCGTCGTCGTCGCTGTTGTGTATGCGTGTTCTT
TTTTGTTTAGTATCGACCGCGCTGGCGGGCTAGCCAATGAAAAAACCCCG
GTCTCAGCGGCTGAAACAAAGAAGGTTATTCCGTGGGCCATGATCTGGGA
CCCCCTGAGGTGGGAGGCTACGTTCTTTCTCTCCTGCCTTAAGAGACAGA
AACGGCAGCAACGTGTTGGTGTGTGCGAATGTGTTGCTTCGATTCGCGTC
GACGGCGCTAAATATCGGGCCGACAACCGCGAAAGAAGCTGCTTCAGTGT
TGTAAGCGGGACCCTAGAATGGCGAGAAGCCGTCCGTTGGGCGTGCCTGT
AGAGAGGTCTATATAGTTTTTGGTGAAGTGGCGGGCCAGGAATGGGTCGG
GACATGTAACGGGGTGAACTTTTTTGCGTAGGTGGGTTTTGCTCGTCGGC
GTGTGTCTTGTCGTGTGCTTGGTATTCTTTCTCTCGATCGGGAATTGGCT
CGGTATGTTGATCGCCGGAGGTGTCTTCCTAAGTTTGGGGGTCGGCAAAT
TCGTCTGCAAATCCTAACGAGTCATCCCAATTGGTGGAGGAAATAGAACG
CTGCCTCCCGGGGCGCCATGAGACGTGGCAATCCCTCTTGCTGGTGTCGA
GTCGACCGTATGTAGGGCGCTGGTTCCCGCCGAAAACAAAGAGACATGTT
CCAAATCCAACCCAATCGGAGTGCACGAGATAATGATGATGTTCCCTTAG
TACGATCCCACCCTCTCGTCGCCGCTGTGCGTACGTTCAAACCTGCGCCA
TCGCTTCGCCGAACGAACCCCTCACTTCCTTCCTTCCTTGGACGACTTGT
CGGCAGGCGACCCGACCGTTGACGACGCCATAGCTAACGGCGGCTGCGGC
AGCCACGGCAGCCCCGACCCTAACGGAAACGCCTCCGGCCACGGCTTGCG
GCCAGCCGACGGCAACAACAGCGGGGTCGACAGCCCTGCACCCTCGTTGG
GGAACGAAATGGACGAAGTGGAGCGCTTGGACGCGACTCAGGTAAGCCCC
TCTGCCACGGGCGCTGCCGCTGCCGGCGGCGGTGGCAAGAGCAACAGCCC
ATCGTCCGGTGCCACCGGTGCTGAAGGCGAAGGGACTGCCGACAGGGGGC
CAGGTGAGGAGGACGGAGGTGTGGCAACTGATGCTGGTGCTGGTGGGGGG
GACGCAGATGGGCAAGATGACGACGAGGACACCGATGAGGAGATGCACAA
CACCCAGGGGGATGAAAGGGGCAGCGAGGAGGCACCCGAGGCGCGCGCGC
AGCCGAACGGAACGGCGGAAGTCTGCGCGGACGAGGACCAGACGGCGGGG
AGGGTCGACGGGGGCGACAGCACTCGAGATGAGGGAAACGAAAACGACGA
GGAGCAAGGGCAACTGTTGCTGGGCATGGAGAGAGAGAGCGGCAACGGCA
GCAGCAGCAGCAGCGGGACGAGCACCTTCGGCAGGCCGCCCCCGCCTCAG
CCGGCCTCCCTGCTGCCGCCCTCGGCAGCGGACGATCCTTCTGCCGGGCA
AGAAGTAAGCCTGTCGGGGCCCGCGGCGGCGGCGCCTCACGGTGCGGTGA
GGCTGGACCAAGGCTTCGGAGACGAAGACGAGACGGAGTTTACGGTCCCG
CCGCTGGACTTCGGCCGCGGCACCAGGGGAGGCCCCGGGGAAGGGGTGGA
CCAGGCCGGTGGAGGCGGCGGTGCCCTCGTGTCGGCCGCTCCGCGCGAAG
ATAACGGGGTCGCCGGTAAGGCTGTCATCTCGAGCTTGTGATTGGGGCGC
GGGAAGGGGAGGGGGTGTGGTGCTTTTTCACACCGTGCAGTGCGAGATTG
TGTTTGGGTGGGCGGGCGGGCGGGCGGGTGGGCGGGGGGGAGAGATACGT
CCGGTGGTACGGTCCTTTGCACCCTGTCGTTTTCCGCAGGTGGGTATCCA
AAGACACTTGCTTCTCTTGGCGCAGTCATTGACGTCGGATCGCCGCGTGA
TGGTTTTGCCTCAATGTTAAGTAAGAGCGAATGCCAGCCAAGGTTCAACC
CGTACCACTCCATTCCGATGGCTACGACTGGTACCACTCCATTCCAATGG
CTGCGGGTGGTAGGCTGTGTCTGTTGTGTGCTTGCTCGACTTGTATCACT
GTTTCTGCTCATTTTCCCACCCTGTTGGTGTGGTCCCGCCCCTCGTTGCT
CATTCCTCCTCTTGTGTTCTTGGTCTTTGCTGACTGCCTGACGACTTACT
CGGCAAAGAGCAAGAAACCGAGCTGCTCACGGTGTCAGAGCTGGAGCAGC
AGATGAGCAAGCTGGAGGATGCGGCG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig19759:2..3027+

>mRNA_Ecto-sp13_S_contig19759.6390.1 ID=mRNA_Ecto-sp13_S_contig19759.6390.1|Name=mRNA_Ecto-sp13_S_contig19759.6390.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=987bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19759:2..3027+ (Ectocarpus species13 EcNAP12_S_4_19m)
GACCTGGAAGTCAGCAAGAATCGGAGAGACGGCGTCAAGGGGGAGGCTCG
TTTCATCGGCACCAACTTGAAGGCAAGATCCGCGCTTATGAAAGCGAAGC
ATAAGGCGCTAGTCTTGAACAAGGAGCTGATGGAGCTGATGCAGTACCTG
GACGTCCCGGTGGGCAACATATTAGCCGACAGCCAGGGCGCACCCAGCCT
GGGCGACCCGACCGTTGACGACGCCATAGCTAACGGCGGCTGCGGCAGCC
ACGGCAGCCCCGACCCTAACGGAAACGCCTCCGGCCACGGCTTGCGGCCA
GCCGACGGCAACAACAGCGGGGTCGACAGCCCTGCACCCTCGTTGGGGAA
CGAAATGGACGAAGTGGAGCGCTTGGACGCGACTCAGAGCAACAGCCCAT
CGTCCGGTGCCACCGGTGCTGAAGGCGAAGGGACTGCCGACAGGGGGCCA
GGTGAGGAGGACGGAGGTGTGGCAACTGATGCTGGTGCTGGTGGGGGGGA
CGCAGATGGGCAAGATGACGACGAGGACACCGATGAGGAGATGCACAACA
CCCAGGGGGATGAAAGGGGCAGCGAGGAGGCACCCGAGGCGCGCGCGCAG
CCGAACGGAACGGCGGAAGTCTGCGCGGACGAGGACCAGACGGCGGGGAG
GGTCGACGGGGGCGACAGCACTCGAGATGAGGGAAACGAAAACGACGAGG
AGCAAGGGCAACTCCTGTCGGGGCCCGCGGCGGCGGCGCCTCACGGTGCG
GTGAGGCTGGACCAAGGCTTCGGAGACGAAGACGAGACGGAGTTTACGGT
CCCGCCGCTGGACTTCGGCCGCGGCACCAGGGGAGGCCCCGGGGAAGGGG
TGGACCAGGCCGGTGGAGGCGGCGGTGCCCTCGTGTCGGCCGCTCCGCGC
GAAGATAACGGGGTCGCCGAGCAAGAAACCGAGCTGCTCACGGTGTCAGA
GCTGGAGCAGCAGATGAGCAAGCTGGAGGATGCGGCG
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