mRNA_Ecto-sp13_S_contig19755.6388.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig19755.6388.1
Unique NamemRNA_Ecto-sp13_S_contig19755.6388.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig19755.6388.1 vs. uniprot
Match: D8LRJ5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRJ5_ECTSI)

HSP 1 Score: 282 bits (722), Expect = 6.950e-94
Identity = 152/166 (91.57%), Postives = 158/166 (95.18%), Query Frame = 1 
Query:    1 QPIVPPEDLAAEQDFRWRPSGREATGGATAAAEGTNWSRAKGRSSTVSGGATGSSRRRARREREERDLDWESVGRAEREMRAAGDRGRREGGDDGDVVVIGQLRRKQRQLAEREHKCEVDLEKVRDRLNVVDATVELWMRRSAGMLSRGGSETDTDVLQTMRRDHV 498
            +PIVPPEDLAAEQDF W+PSGREATGGATAAAEGTN SR+K R STVSGGAT S+RRRARREREERDLDWE+VGRAEREMRAAG RGRREG DDGDVV IGQLRRKQRQLAEREHKCEVDLEKVRDRL+VVDATVELWMRRSAGMLSRGGSETDTDVLQTMRRDHV
Sbjct:  115 RPIVPPEDLAAEQDFLWQPSGREATGGATAAAEGTNRSRSKDRGSTVSGGATRSTRRRARREREERDLDWENVGRAEREMRAAGGRGRREGRDDGDVVAIGQLRRKQRQLAEREHKCEVDLEKVRDRLDVVDATVELWMRRSAGMLSRGGSETDTDVLQTMRRDHV 280
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BLAST of mRNA_Ecto-sp13_S_contig19755.6388.1 vs. uniprot
Match: A0A6H5J5V9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J5V9_9PHAE)

HSP 1 Score: 284 bits (727), Expect = 3.750e-91
Identity = 151/163 (92.64%), Postives = 154/163 (94.48%), Query Frame = 1 
Query:    1 QPIVPPEDLAAEQDFRWRPSGREATGGATAAAEGTNWSRAKGRSSTVSGGATGSSRRRARREREERDLDWESVGRAEREMRAAGDRGRREGGDDGDVVVIGQLRRKQRQLAEREHKCEVDLEKVRDRLNVVDATVELWMRRSAGMLSRGGSETDTDVLQTMRR 489
            +PIVPPEDLAAEQDFRWRPSGREATGGATA AE TNWSRAKGR ST SGGATGSSRRRARRER+ERDLDWESVGRAEREM AAG RGRREGGDDGDVV IGQLRRKQRQLAEREHKCEVDLEKVRDRL+VVDATVELWMRRSAGMLSRGGSETDTDVLQ  RR
Sbjct:  267 RPIVPPEDLAAEQDFRWRPSGREATGGATATAESTNWSRAKGRGSTASGGATGSSRRRARRERDERDLDWESVGRAEREMHAAGGRGRREGGDDGDVVAIGQLRRKQRQLAEREHKCEVDLEKVRDRLDVVDATVELWMRRSAGMLSRGGSETDTDVLQAKRR 429
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig19755.6388.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LRJ5_ECTSI6.950e-9491.57Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5J5V9_9PHAE3.750e-9192.64Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig19755contigEcto-sp13_S_contig19755:1873..3125 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size498
Hectar predicted targeting categoryother localisation
Exons3
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-12_000020.1
Cds size498
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462997.5465608-CDS-Ecto-sp13_S_contig19755:1872..18931681462997.5465608-CDS-Ecto-sp13_S_contig19755:1872..1893Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19755 1873..1893 -
1681462997.5636384-CDS-Ecto-sp13_S_contig19755:2085..21931681462997.5636384-CDS-Ecto-sp13_S_contig19755:2085..2193Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19755 2086..2193 -
1681462997.5809166-CDS-Ecto-sp13_S_contig19755:2756..31251681462997.5809166-CDS-Ecto-sp13_S_contig19755:2756..3125Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19755 2757..3125 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig19755.6388.1prot_Ecto-sp13_S_contig19755.6388.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig19755 1873..3125 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig19755.6388.1

>prot_Ecto-sp13_S_contig19755.6388.1 ID=prot_Ecto-sp13_S_contig19755.6388.1|Name=mRNA_Ecto-sp13_S_contig19755.6388.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=166bp
QPIVPPEDLAAEQDFRWRPSGREATGGATAAAEGTNWSRAKGRSSTVSGG
ATGSSRRRARREREERDLDWESVGRAEREMRAAGDRGRREGGDDGDVVVI
GQLRRKQRQLAEREHKCEVDLEKVRDRLNVVDATVELWMRRSAGMLSRGG
SETDTDVLQTMRRDHV
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mRNA from alignment at Ecto-sp13_S_contig19755:1873..3125-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig19755.6388.1 ID=mRNA_Ecto-sp13_S_contig19755.6388.1|Name=mRNA_Ecto-sp13_S_contig19755.6388.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1253bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19755:1873..3125- (Ectocarpus species13 EcNAP12_S_4_19m)
CAGCCAATCGTTCCGCCAGAGGACCTTGCCGCAGAGCAAGACTTTCGTTG
GCGACCAAGTGGCCGAGAGGCCACCGGCGGGGCCACCGCCGCCGCTGAGG
GCACAAACTGGAGCCGCGCGAAAGGTAGAAGCTCCACTGTAAGCGGCGGT
GCTACGGGGAGCAGCAGAAGGCGGGCTAGACGCGAGCGGGAGGAGCGCGA
TCTAGACTGGGAAAGCGTCGGGCGAGCGGAGCGGGAGATGCGTGCAGCGG
GTGACAGAGGGAGAAGGGAGGGTGGAGACGACGGAGATGTGGTGGTAATA
GGACAGCTACGACGAAAACAGAGGCAGTTGGCGGAGAGGGAACACAAGTG
CGAGGTGGACCTAGAAAAGGTGAGCAGGTAAAAGTCGACAGGCTCGTTGG
TGTTTCTTGTCCTATCTTCGGGCGAGTGCGTAACGAGTTTTTGGCCTCAC
GTGGACCGGATACCGGATACCGACTTCATTGCTGCCTCGTGACGTGCTGT
GAAAATTCAACCTCCAGATCTCCACGTTTCTCAGCGCTGTGTTGTGGGTG
TCGTCTCCTGCAACACGCCTTTTGTATTTGTTTACCTTCCTTGTCGGCCA
AACTCTTGACCAGACTATACCGCTCGTCGACCAACCGTGTTTTTTGCTTA
TTTGTCCGACATCCAACTGAAATCACGCTTGTTGTATTACTACAGCCCTT
GCTTTGCTCGGCCGCACTTTTGTCGCGAATTGGCCCAGTCTTGGCTCACA
AACGCAATGTTCAATGTTGAGATTTCTACACTTGTTTCTATTCTACAACC
GCAAGTTAAACCGCGGTGATGACGCTATCATGTTGCGCCACATCCCTCTA
ATGCGTATCGCTTATTTTGCTCGCGACCTCTTCCTCTCCTGCTTCTCGAC
TGCGGTGATTTCTTCTTTTGTTGGGGTACAAGGTTCGGGATCGCCTTAAC
GTGGTGGATGCCACGGTGGAGCTGTGGATGCGCCGATCGGCGGGCATGTT
GTCGCGCGGGGGTTCCGAGACTGACACGGATGTGCTTCAGGTATTCACCG
CATTCAAGTCGCATCAGAAACACGTCGTCTATACTGAAGACGGTACGAAT
CAAGGACTCCTGTGATTCCTCTATGCGTTTTGTGTTCCGGCCTCCTGCGC
ATGTATCATGTTGGCATGCTCCAGCCCTTCCTCGTTTCCGCCCTCGACGT
TGGGACGAAATATTCCGGCACTGATTGCCGAGACGATGAGGCGCGACCAT
GTT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig19755:1873..3125-

>mRNA_Ecto-sp13_S_contig19755.6388.1 ID=mRNA_Ecto-sp13_S_contig19755.6388.1|Name=mRNA_Ecto-sp13_S_contig19755.6388.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=498bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19755:1873..3125- (Ectocarpus species13 EcNAP12_S_4_19m)
CAGCCAATCGTTCCGCCAGAGGACCTTGCCGCAGAGCAAGACTTTCGTTG
GCGACCAAGTGGCCGAGAGGCCACCGGCGGGGCCACCGCCGCCGCTGAGG
GCACAAACTGGAGCCGCGCGAAAGGTAGAAGCTCCACTGTAAGCGGCGGT
GCTACGGGGAGCAGCAGAAGGCGGGCTAGACGCGAGCGGGAGGAGCGCGA
TCTAGACTGGGAAAGCGTCGGGCGAGCGGAGCGGGAGATGCGTGCAGCGG
GTGACAGAGGGAGAAGGGAGGGTGGAGACGACGGAGATGTGGTGGTAATA
GGACAGCTACGACGAAAACAGAGGCAGTTGGCGGAGAGGGAACACAAGTG
CGAGGTGGACCTAGAAAAGGTTCGGGATCGCCTTAACGTGGTGGATGCCA
CGGTGGAGCTGTGGATGCGCCGATCGGCGGGCATGTTGTCGCGCGGGGGT
TCCGAGACTGACACGGATGTGCTTCAGACGATGAGGCGCGACCATGTT
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