mRNA_Ecto-sp13_S_contig19754.6387.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig19754.6387.1
Unique NamemRNA_Ecto-sp13_S_contig19754.6387.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig19754.6387.1 vs. uniprot
Match: A0A6H5JFR1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFR1_9PHAE)

HSP 1 Score: 74.7 bits (182), Expect = 3.170e-13
Identity = 46/107 (42.99%), Postives = 68/107 (63.55%), Query Frame = 1
Query:    1 LPTAAREGQTEMVQLLVLKGADKDVIDNFGYTPLYLA---------VLHSRVAAVLALLHAGADISLRCGISKRSVLHVAAEEKHVDIMRAVVERGANVEAVDDDQN 294
            L  A R G  E+V  L+  GA   + D  G TPL +A         +L   + +  AL+ AGA+I++RCG+SKR+VL +AAE+  VDI+RA+V+ GA+V AVD+D++
Sbjct:    5 LHAAVRYGYAEVVTNLLEHGACVSIKDARGSTPLQVAAECTPLFGALLFGHLTSARALMAAGAEINVRCGLSKRTVLSLAAEKGDVDILRALVKNGADVTAVDNDRD 111          
BLAST of mRNA_Ecto-sp13_S_contig19754.6387.1 vs. uniprot
Match: A0L850_MAGMM (Ankyrin repeat-like protein n=1 Tax=Magnetococcus marinus (strain ATCC BAA-1437 / JCM 17883 / MC-1) TaxID=156889 RepID=A0L850_MAGMM)

HSP 1 Score: 62.4 bits (150), Expect = 2.020e-8
Identity = 37/101 (36.63%), Postives = 61/101 (60.40%), Query Frame = 1
Query:    1 LPTAAREGQTEMVQLLVLKGADKDVIDNFGYTPLYLAVLHSRVAAVLALLHAG-ADISLRCGISKRSVLHVAAEEKHVDIMRAVVERGANVEAVDDDQNTP 300
            L  A  +G  EMV+LL+  GAD  + D FG TPL+ A +++ +A   ALL +G  D+  R      + L++A  + HV++++ ++E+GA+    D+D NTP
Sbjct:  891 LNMAVIQGHVEMVKLLLAVGADATLADEFGNTPLHNAAINNELACAEALLGSGKGDVDARAE-HILTALNMAVIQGHVEMVKLLLEKGADATLADEDGNTP 990          
BLAST of mRNA_Ecto-sp13_S_contig19754.6387.1 vs. uniprot
Match: A0A6H5JN15_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN15_9PHAE)

HSP 1 Score: 60.5 bits (145), Expect = 9.140e-8
Identity = 35/81 (43.21%), Postives = 52/81 (64.20%), Query Frame = 1
Query:   43 LLVLKGADKDVIDNFGYTPLYLAVLHSRVAAVLALLHAGADISLRCGISKR-SVLHVAAEEKHVDIMRAVVERGANVEAVD 282
            LL+  GA+ DV+D  G TP++L+     ++AV ALL AG D SLR G  +  S L +AA   HV++M+A++  G +V+A D
Sbjct:  100 LLLRDGAEVDVLDTKGRTPIHLSAKRGSLSAVQALLAAGGDSSLRYGKGEAFSALGLAARGGHVEVMQALIRHGVDVDAPD 180          
BLAST of mRNA_Ecto-sp13_S_contig19754.6387.1 vs. uniprot
Match: A0A2V8U4L6_9BACT (Uncharacterized protein n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A2V8U4L6_9BACT)

HSP 1 Score: 60.1 bits (144), Expect = 1.070e-7
Identity = 37/101 (36.63%), Postives = 57/101 (56.44%), Query Frame = 1
Query:   10 AAREGQTEMVQLLVLKGADKDVIDNFGYTPLYLA----VLHSRVAAVLALLHAGADISLRCGISKRSVLHVAAEEKHVDIMRAVVERGANVEAVDDDQNTP 300
            A+  G    V+LL+  GAD +V D  G+TPLY       + S    V AL+  GA++  R G+   + LH+AA   +V++  A++E GA++EA D   +TP
Sbjct:  246 ASAAGNLNTVELLLRLGADPNVTDAGGHTPLYSVGNECTVESGGNVVRALVQGGANVDARDGVKHCTALHMAARRGNVEVAEALLECGADIEARDSLGDTP 346          
BLAST of mRNA_Ecto-sp13_S_contig19754.6387.1 vs. uniprot
Match: A0A2G5EWU3_AQUCA (RING-type domain-containing protein n=3 Tax=Aquilegia coerulea TaxID=218851 RepID=A0A2G5EWU3_AQUCA)

HSP 1 Score: 60.1 bits (144), Expect = 1.110e-7
Identity = 31/85 (36.47%), Postives = 52/85 (61.18%), Query Frame = 1
Query:    1 LPTAAREGQTEMVQLLVLKGADKDVIDNFGYTPLYLAVLHSRVAAVLALLHAGADISLRCGISKRSVLHVAAEEKHVDIMRAVVE 255
            L  AA  GQ E++ +++ +  + D+++    TPL LA +H R+A VL LL AGA+I +   +  R+ LH AA   H D ++A+++
Sbjct:   51 LHIAAANGQIEVLCMILDRSVNPDILNRHRQTPLMLAAMHGRLACVLRLLQAGANILMFDSVQGRTCLHYAAYYGHSDCLQAILD 135          
BLAST of mRNA_Ecto-sp13_S_contig19754.6387.1 vs. uniprot
Match: A0A670YT21_PSETE (Ankyrin repeat and SOCS box containing 3 n=4 Tax=Elapidae TaxID=8602 RepID=A0A670YT21_PSETE)

HSP 1 Score: 59.3 bits (142), Expect = 2.070e-7
Identity = 37/100 (37.00%), Postives = 55/100 (55.00%), Query Frame = 1
Query:    1 LPTAAREGQTEMVQLLVLKGADKDVIDNFGYTPLYLAVLHSRVAAVLALLHAGADISLRCGISKRSVLHVAAEEKHVDIMRAVVERGANVEAVDDDQNTP 300
            L  +A  G  E   +L+  GAD D + N   TPL+LAV +     +  LL  GADI+     S+ + LH AA + + +I++ +++ GAN E VDD   TP
Sbjct:   11 LHLSASRGNLECTAILLESGADPDEVTNDATTPLFLAVENEHTNVIKLLLQYGADINGSHCWSEWNSLHQAAFQNYSEILKILLDEGANKECVDDFGITP 110          
BLAST of mRNA_Ecto-sp13_S_contig19754.6387.1 vs. uniprot
Match: D8LL12_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LL12_ECTSI)

HSP 1 Score: 58.9 bits (141), Expect = 2.580e-7
Identity = 27/46 (58.70%), Postives = 41/46 (89.13%), Query Frame = 1
Query:  160 ADISLRCGISKRSVLHVAAEEKHVDIMRAVVERGANVEAVDDDQNT 297
            AD+++RCG+ KR+VL +AAE+ HVDI+RA+V+ GA+V AVD+D++T
Sbjct:  166 ADVNVRCGLLKRTVLSLAAEKGHVDILRALVKHGADVTAVDNDRDT 211          
BLAST of mRNA_Ecto-sp13_S_contig19754.6387.1 vs. uniprot
Match: A0A0L0DHT0_THETB (Uncharacterized protein n=1 Tax=Thecamonas trahens ATCC 50062 TaxID=461836 RepID=A0A0L0DHT0_THETB)

HSP 1 Score: 58.9 bits (141), Expect = 3.010e-7
Identity = 37/100 (37.00%), Postives = 54/100 (54.00%), Query Frame = 1
Query:    1 LPTAAREGQTEMVQLLVLKGADKDVIDNFGYTPLYLAVLHSRVAAVLALLHAGADISLRCGISKRSVLHVAAEEKHVDIMRAVVERGANVEAVDDDQNTP 300
            L  A R G T++V LL+L GAD    D  G TPL+ A +  RV  + +LL  GA +++    S  + LH+AA + H+  +  ++  GA    VD D  TP
Sbjct:  199 LAIAVRAGSTDLVDLLLLHGADASRPDVRGNTPLHWAAIEGRVDIMASLLDMGALLNVPNRASAFAPLHLAASKGHMAAVDMLIAAGARALVVDKDGQTP 298          
BLAST of mRNA_Ecto-sp13_S_contig19754.6387.1 vs. uniprot
Match: A0A2C9VZB8_MANES (RING-type domain-containing protein n=8 Tax=Euphorbiaceae TaxID=3977 RepID=A0A2C9VZB8_MANES)

HSP 1 Score: 58.5 bits (140), Expect = 3.800e-7
Identity = 29/84 (34.52%), Postives = 51/84 (60.71%), Query Frame = 1
Query:    1 LPTAAREGQTEMVQLLVLKGADKDVIDNFGYTPLYLAVLHSRVAAVLALLHAGADISLRCGISKRSVLHVAAEEKHVDIMRAVV 252
            L  AA  G+ E++ +++ +  D DV++    TPL LA +H ++A ++ L+ AGA+I     + +R+ LH AA   H D ++AV+
Sbjct:   50 LHIAAANGRIEILSMILERSVDPDVVNRHKQTPLMLAAMHGKIACLIKLIEAGANILKFDSLHERTCLHYAAYYGHSDCLQAVL 133          
BLAST of mRNA_Ecto-sp13_S_contig19754.6387.1 vs. uniprot
Match: A0A6A3CGS2_HIBSY (Putative E3 ubiquitin-protein ligase XBOS31 n=1 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A3CGS2_HIBSY)

HSP 1 Score: 57.8 bits (138), Expect = 6.670e-7
Identity = 30/84 (35.71%), Postives = 50/84 (59.52%), Query Frame = 1
Query:    1 LPTAAREGQTEMVQLLVLKGADKDVIDNFGYTPLYLAVLHSRVAAVLALLHAGADISLRCGISKRSVLHVAAEEKHVDIMRAVV 252
            L  AA  GQ E++ +L+ K  + DV++    TPL LA +H +++ V  L+ AGA+I +   +  R+ LH AA   H D ++A++
Sbjct:   50 LHIAAANGQIEILDMLLEKSVNPDVLNRHKQTPLTLAAMHGKISCVERLIEAGANILMFDSLHGRTCLHYAAYYGHFDCLQAIL 133          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig19754.6387.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JFR1_9PHAE3.170e-1342.99Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0L850_MAGMM2.020e-836.63Ankyrin repeat-like protein n=1 Tax=Magnetococcus ... [more]
A0A6H5JN15_9PHAE9.140e-843.21Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A2V8U4L6_9BACT1.070e-736.63Uncharacterized protein n=1 Tax=Acidobacteria bact... [more]
A0A2G5EWU3_AQUCA1.110e-736.47RING-type domain-containing protein n=3 Tax=Aquile... [more]
A0A670YT21_PSETE2.070e-737.00Ankyrin repeat and SOCS box containing 3 n=4 Tax=E... [more]
D8LL12_ECTSI2.580e-758.70Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A0L0DHT0_THETB3.010e-737.00Uncharacterized protein n=1 Tax=Thecamonas trahens... [more]
A0A2C9VZB8_MANES3.800e-734.52RING-type domain-containing protein n=8 Tax=Euphor... [more]
A0A6A3CGS2_HIBSY6.670e-735.71Putative E3 ubiquitin-protein ligase XBOS31 n=1 Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig19754contigEcto-sp13_S_contig19754:2063..2521 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeBacteria
Stop0
Start0
Seed ortholog score64.3
Seed ortholog evalue5.6e-08
Seed eggNOG ortholog156889.Mmc1_1634
Model size459
KEGG koko:K06867,ko:K21440
Hectar predicted targeting categoryother localisation
Exons1
EggNOG free text desc.ankyrin repeat
EggNOG OGs1RBYV@1224,2UA2F@28211,COG0666@1,COG0666@2
Cds size459
COG Functional cat.KT
Best tax levelAlphaproteobacteria
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462997.5120077-CDS-Ecto-sp13_S_contig19754:2062..25211681462997.5120077-CDS-Ecto-sp13_S_contig19754:2062..2521Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19754 2063..2521 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig19754.6387.1prot_Ecto-sp13_S_contig19754.6387.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig19754 2063..2521 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig19754.6387.1

>prot_Ecto-sp13_S_contig19754.6387.1 ID=prot_Ecto-sp13_S_contig19754.6387.1|Name=mRNA_Ecto-sp13_S_contig19754.6387.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=153bp
LPTAAREGQTEMVQLLVLKGADKDVIDNFGYTPLYLAVLHSRVAAVLALL
HAGADISLRCGISKRSVLHVAAEEKHVDIMRAVVERGANVEAVDDDQNTP
LHLAAFFNRVEAIDLLLEAGANIEARDESDSTPLHCAVLECHLETMSALL
KQG
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mRNA from alignment at Ecto-sp13_S_contig19754:2063..2521+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig19754.6387.1 ID=mRNA_Ecto-sp13_S_contig19754.6387.1|Name=mRNA_Ecto-sp13_S_contig19754.6387.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=459bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19754:2063..2521+ (Ectocarpus species13 EcNAP12_S_4_19m)
CTCCCCACTGCTGCGCGAGAAGGGCAAACGGAGATGGTGCAGTTGTTGGT GCTCAAGGGGGCTGACAAAGACGTGATTGACAACTTCGGATACACACCGC TTTACCTGGCCGTTTTGCACAGTCGCGTGGCCGCCGTACTAGCTCTCTTG CACGCTGGTGCAGACATCAGCCTTCGGTGCGGCATCTCAAAGAGGTCGGT GCTGCACGTGGCGGCCGAAGAGAAGCATGTTGATATCATGAGGGCGGTTG TCGAGCGCGGGGCCAACGTGGAGGCTGTTGACGACGACCAAAACACACCC CTTCACTTGGCCGCATTTTTCAACAGGGTGGAGGCGATCGATTTGCTCTT GGAGGCCGGGGCCAACATCGAAGCACGGGATGAGAGCGACTCTACCCCTC TCCACTGTGCTGTCCTCGAGTGCCATCTGGAAACCATGTCGGCCCTCCTG AAGCAAGGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig19754:2063..2521+

>mRNA_Ecto-sp13_S_contig19754.6387.1 ID=mRNA_Ecto-sp13_S_contig19754.6387.1|Name=mRNA_Ecto-sp13_S_contig19754.6387.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=459bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19754:2063..2521+ (Ectocarpus species13 EcNAP12_S_4_19m)
CTCCCCACTGCTGCGCGAGAAGGGCAAACGGAGATGGTGCAGTTGTTGGT
GCTCAAGGGGGCTGACAAAGACGTGATTGACAACTTCGGATACACACCGC
TTTACCTGGCCGTTTTGCACAGTCGCGTGGCCGCCGTACTAGCTCTCTTG
CACGCTGGTGCAGACATCAGCCTTCGGTGCGGCATCTCAAAGAGGTCGGT
GCTGCACGTGGCGGCCGAAGAGAAGCATGTTGATATCATGAGGGCGGTTG
TCGAGCGCGGGGCCAACGTGGAGGCTGTTGACGACGACCAAAACACACCC
CTTCACTTGGCCGCATTTTTCAACAGGGTGGAGGCGATCGATTTGCTCTT
GGAGGCCGGGGCCAACATCGAAGCACGGGATGAGAGCGACTCTACCCCTC
TCCACTGTGCTGTCCTCGAGTGCCATCTGGAAACCATGTCGGCCCTCCTG
AAGCAAGGG
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