mRNA_Ecto-sp13_S_contig19754.6387.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig19754.6387.1 vs. uniprot
Match: A0A6H5JFR1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFR1_9PHAE) HSP 1 Score: 74.7 bits (182), Expect = 3.170e-13 Identity = 46/107 (42.99%), Postives = 68/107 (63.55%), Query Frame = 1
Query: 1 LPTAAREGQTEMVQLLVLKGADKDVIDNFGYTPLYLA---------VLHSRVAAVLALLHAGADISLRCGISKRSVLHVAAEEKHVDIMRAVVERGANVEAVDDDQN 294
L A R G E+V L+ GA + D G TPL +A +L + + AL+ AGA+I++RCG+SKR+VL +AAE+ VDI+RA+V+ GA+V AVD+D++
Sbjct: 5 LHAAVRYGYAEVVTNLLEHGACVSIKDARGSTPLQVAAECTPLFGALLFGHLTSARALMAAGAEINVRCGLSKRTVLSLAAEKGDVDILRALVKNGADVTAVDNDRD 111
BLAST of mRNA_Ecto-sp13_S_contig19754.6387.1 vs. uniprot
Match: A0L850_MAGMM (Ankyrin repeat-like protein n=1 Tax=Magnetococcus marinus (strain ATCC BAA-1437 / JCM 17883 / MC-1) TaxID=156889 RepID=A0L850_MAGMM) HSP 1 Score: 62.4 bits (150), Expect = 2.020e-8 Identity = 37/101 (36.63%), Postives = 61/101 (60.40%), Query Frame = 1
Query: 1 LPTAAREGQTEMVQLLVLKGADKDVIDNFGYTPLYLAVLHSRVAAVLALLHAG-ADISLRCGISKRSVLHVAAEEKHVDIMRAVVERGANVEAVDDDQNTP 300
L A +G EMV+LL+ GAD + D FG TPL+ A +++ +A ALL +G D+ R + L++A + HV++++ ++E+GA+ D+D NTP
Sbjct: 891 LNMAVIQGHVEMVKLLLAVGADATLADEFGNTPLHNAAINNELACAEALLGSGKGDVDARAE-HILTALNMAVIQGHVEMVKLLLEKGADATLADEDGNTP 990
BLAST of mRNA_Ecto-sp13_S_contig19754.6387.1 vs. uniprot
Match: A0A6H5JN15_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN15_9PHAE) HSP 1 Score: 60.5 bits (145), Expect = 9.140e-8 Identity = 35/81 (43.21%), Postives = 52/81 (64.20%), Query Frame = 1
Query: 43 LLVLKGADKDVIDNFGYTPLYLAVLHSRVAAVLALLHAGADISLRCGISKR-SVLHVAAEEKHVDIMRAVVERGANVEAVD 282
LL+ GA+ DV+D G TP++L+ ++AV ALL AG D SLR G + S L +AA HV++M+A++ G +V+A D
Sbjct: 100 LLLRDGAEVDVLDTKGRTPIHLSAKRGSLSAVQALLAAGGDSSLRYGKGEAFSALGLAARGGHVEVMQALIRHGVDVDAPD 180
BLAST of mRNA_Ecto-sp13_S_contig19754.6387.1 vs. uniprot
Match: A0A2V8U4L6_9BACT (Uncharacterized protein n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A2V8U4L6_9BACT) HSP 1 Score: 60.1 bits (144), Expect = 1.070e-7 Identity = 37/101 (36.63%), Postives = 57/101 (56.44%), Query Frame = 1
Query: 10 AAREGQTEMVQLLVLKGADKDVIDNFGYTPLYLA----VLHSRVAAVLALLHAGADISLRCGISKRSVLHVAAEEKHVDIMRAVVERGANVEAVDDDQNTP 300
A+ G V+LL+ GAD +V D G+TPLY + S V AL+ GA++ R G+ + LH+AA +V++ A++E GA++EA D +TP
Sbjct: 246 ASAAGNLNTVELLLRLGADPNVTDAGGHTPLYSVGNECTVESGGNVVRALVQGGANVDARDGVKHCTALHMAARRGNVEVAEALLECGADIEARDSLGDTP 346
BLAST of mRNA_Ecto-sp13_S_contig19754.6387.1 vs. uniprot
Match: A0A2G5EWU3_AQUCA (RING-type domain-containing protein n=3 Tax=Aquilegia coerulea TaxID=218851 RepID=A0A2G5EWU3_AQUCA) HSP 1 Score: 60.1 bits (144), Expect = 1.110e-7 Identity = 31/85 (36.47%), Postives = 52/85 (61.18%), Query Frame = 1
Query: 1 LPTAAREGQTEMVQLLVLKGADKDVIDNFGYTPLYLAVLHSRVAAVLALLHAGADISLRCGISKRSVLHVAAEEKHVDIMRAVVE 255
L AA GQ E++ +++ + + D+++ TPL LA +H R+A VL LL AGA+I + + R+ LH AA H D ++A+++
Sbjct: 51 LHIAAANGQIEVLCMILDRSVNPDILNRHRQTPLMLAAMHGRLACVLRLLQAGANILMFDSVQGRTCLHYAAYYGHSDCLQAILD 135
BLAST of mRNA_Ecto-sp13_S_contig19754.6387.1 vs. uniprot
Match: A0A670YT21_PSETE (Ankyrin repeat and SOCS box containing 3 n=4 Tax=Elapidae TaxID=8602 RepID=A0A670YT21_PSETE) HSP 1 Score: 59.3 bits (142), Expect = 2.070e-7 Identity = 37/100 (37.00%), Postives = 55/100 (55.00%), Query Frame = 1
Query: 1 LPTAAREGQTEMVQLLVLKGADKDVIDNFGYTPLYLAVLHSRVAAVLALLHAGADISLRCGISKRSVLHVAAEEKHVDIMRAVVERGANVEAVDDDQNTP 300
L +A G E +L+ GAD D + N TPL+LAV + + LL GADI+ S+ + LH AA + + +I++ +++ GAN E VDD TP
Sbjct: 11 LHLSASRGNLECTAILLESGADPDEVTNDATTPLFLAVENEHTNVIKLLLQYGADINGSHCWSEWNSLHQAAFQNYSEILKILLDEGANKECVDDFGITP 110
BLAST of mRNA_Ecto-sp13_S_contig19754.6387.1 vs. uniprot
Match: D8LL12_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LL12_ECTSI) HSP 1 Score: 58.9 bits (141), Expect = 2.580e-7 Identity = 27/46 (58.70%), Postives = 41/46 (89.13%), Query Frame = 1
Query: 160 ADISLRCGISKRSVLHVAAEEKHVDIMRAVVERGANVEAVDDDQNT 297
AD+++RCG+ KR+VL +AAE+ HVDI+RA+V+ GA+V AVD+D++T
Sbjct: 166 ADVNVRCGLLKRTVLSLAAEKGHVDILRALVKHGADVTAVDNDRDT 211
BLAST of mRNA_Ecto-sp13_S_contig19754.6387.1 vs. uniprot
Match: A0A0L0DHT0_THETB (Uncharacterized protein n=1 Tax=Thecamonas trahens ATCC 50062 TaxID=461836 RepID=A0A0L0DHT0_THETB) HSP 1 Score: 58.9 bits (141), Expect = 3.010e-7 Identity = 37/100 (37.00%), Postives = 54/100 (54.00%), Query Frame = 1
Query: 1 LPTAAREGQTEMVQLLVLKGADKDVIDNFGYTPLYLAVLHSRVAAVLALLHAGADISLRCGISKRSVLHVAAEEKHVDIMRAVVERGANVEAVDDDQNTP 300
L A R G T++V LL+L GAD D G TPL+ A + RV + +LL GA +++ S + LH+AA + H+ + ++ GA VD D TP
Sbjct: 199 LAIAVRAGSTDLVDLLLLHGADASRPDVRGNTPLHWAAIEGRVDIMASLLDMGALLNVPNRASAFAPLHLAASKGHMAAVDMLIAAGARALVVDKDGQTP 298
BLAST of mRNA_Ecto-sp13_S_contig19754.6387.1 vs. uniprot
Match: A0A2C9VZB8_MANES (RING-type domain-containing protein n=8 Tax=Euphorbiaceae TaxID=3977 RepID=A0A2C9VZB8_MANES) HSP 1 Score: 58.5 bits (140), Expect = 3.800e-7 Identity = 29/84 (34.52%), Postives = 51/84 (60.71%), Query Frame = 1
Query: 1 LPTAAREGQTEMVQLLVLKGADKDVIDNFGYTPLYLAVLHSRVAAVLALLHAGADISLRCGISKRSVLHVAAEEKHVDIMRAVV 252
L AA G+ E++ +++ + D DV++ TPL LA +H ++A ++ L+ AGA+I + +R+ LH AA H D ++AV+
Sbjct: 50 LHIAAANGRIEILSMILERSVDPDVVNRHKQTPLMLAAMHGKIACLIKLIEAGANILKFDSLHERTCLHYAAYYGHSDCLQAVL 133
BLAST of mRNA_Ecto-sp13_S_contig19754.6387.1 vs. uniprot
Match: A0A6A3CGS2_HIBSY (Putative E3 ubiquitin-protein ligase XBOS31 n=1 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A3CGS2_HIBSY) HSP 1 Score: 57.8 bits (138), Expect = 6.670e-7 Identity = 30/84 (35.71%), Postives = 50/84 (59.52%), Query Frame = 1
Query: 1 LPTAAREGQTEMVQLLVLKGADKDVIDNFGYTPLYLAVLHSRVAAVLALLHAGADISLRCGISKRSVLHVAAEEKHVDIMRAVV 252
L AA GQ E++ +L+ K + DV++ TPL LA +H +++ V L+ AGA+I + + R+ LH AA H D ++A++
Sbjct: 50 LHIAAANGQIEILDMLLEKSVNPDVLNRHKQTPLTLAAMHGKISCVERLIEAGANILMFDSLHGRTCLHYAAYYGHFDCLQAIL 133 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig19754.6387.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig19754.6387.1 >prot_Ecto-sp13_S_contig19754.6387.1 ID=prot_Ecto-sp13_S_contig19754.6387.1|Name=mRNA_Ecto-sp13_S_contig19754.6387.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=153bp LPTAAREGQTEMVQLLVLKGADKDVIDNFGYTPLYLAVLHSRVAAVLALLback to top mRNA from alignment at Ecto-sp13_S_contig19754:2063..2521+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig19754.6387.1 ID=mRNA_Ecto-sp13_S_contig19754.6387.1|Name=mRNA_Ecto-sp13_S_contig19754.6387.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=459bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19754:2063..2521+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig19754:2063..2521+ >mRNA_Ecto-sp13_S_contig19754.6387.1 ID=mRNA_Ecto-sp13_S_contig19754.6387.1|Name=mRNA_Ecto-sp13_S_contig19754.6387.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=459bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19754:2063..2521+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |