mRNA_Ecto-sp13_S_contig19744.6381.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig19744.6381.1
Unique NamemRNA_Ecto-sp13_S_contig19744.6381.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig19744.6381.1 vs. uniprot
Match: A0A6H5KWP6_9PHAE (UDP-glucuronate decarboxylase n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KWP6_9PHAE)

HSP 1 Score: 355 bits (910), Expect = 2.670e-119
Identity = 179/179 (100.00%), Postives = 179/179 (100.00%), Query Frame = 1 
Query:    1 RSDEYVSSSRVQEMVEVEVQRRVQQQVSLLNSEPHTLPSEGGKGPAVANDFPPTADLSEKDRMRVLVTGGAGFVGSHLVDALMKMGHDVIVLDNFFTGRQKNVQHWIGHPSFHLITHDVVEPIKLEVDQIYHLACPASPPHYQYNPIKTIKTSTQGTLNMLGLAKRTGARMLLTSTSEV 537
            RSDEYVSSSRVQEMVEVEVQRRVQQQVSLLNSEPHTLPSEGGKGPAVANDFPPTADLSEKDRMRVLVTGGAGFVGSHLVDALMKMGHDVIVLDNFFTGRQKNVQHWIGHPSFHLITHDVVEPIKLEVDQIYHLACPASPPHYQYNPIKTIKTSTQGTLNMLGLAKRTGARMLLTSTSEV
Sbjct:   88 RSDEYVSSSRVQEMVEVEVQRRVQQQVSLLNSEPHTLPSEGGKGPAVANDFPPTADLSEKDRMRVLVTGGAGFVGSHLVDALMKMGHDVIVLDNFFTGRQKNVQHWIGHPSFHLITHDVVEPIKLEVDQIYHLACPASPPHYQYNPIKTIKTSTQGTLNMLGLAKRTGARMLLTSTSEV 266
[Close]
BLAST of mRNA_Ecto-sp13_S_contig19744.6381.1 vs. uniprot
Match: W7TKX8_9STRA (UDP-glucuronate decarboxylase (Fragment) n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TKX8_9STRA)

HSP 1 Score: 227 bits (579), Expect = 1.190e-71
Identity = 119/172 (69.19%), Postives = 135/172 (78.49%), Query Frame = 1 
Query:   22 SSRVQEMVEVEVQRRVQQQVSLLNSEPHTLPSEGGKGPAVANDFPPTADLSEKDRMRVLVTGGAGFVGSHLVDALMKMGHDVIVLDNFFTGRQKNVQHWIGHPSFHLITHDVVEPIKLEVDQIYHLACPASPPHYQYNPIKTIKTSTQGTLNMLGLAKRTGARMLLTSTSEV 537
            S+ ++++++ E+  +V ++V+ +N   H     GGK       FPPTA L E  RMRVLVTGGAGFVGSHLVD LM  GH+VIV+DN FTGR+KNV HWIGHP F LI HDVVEPI LEVDQIYHLACPASPPHYQYNPIKTIKTST GTLNMLGLAKR  ARMLLTSTSEV
Sbjct:  108 SAALRDVIQHEIGHQVHERVNAMNKA-HQAAGWGGKV------FPPTATLPESQRMRVLVTGGAGFVGSHLVDRLMAEGHEVIVVDNMFTGRKKNVAHWIGHPHFMLIVHDVVEPILLEVDQIYHLACPASPPHYQYNPIKTIKTSTMGTLNMLGLAKRVRARMLLTSTSEV 272
[Close]
BLAST of mRNA_Ecto-sp13_S_contig19744.6381.1 vs. uniprot
Match: A0A836C7X9_9STRA (UDP-glucuronate decarboxylase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C7X9_9STRA)

HSP 1 Score: 228 bits (580), Expect = 3.170e-70
Identity = 122/167 (73.05%), Postives = 132/167 (79.04%), Query Frame = 1 
Query:   40 MVEVEVQRRVQQ-QVSLLNSEPHTLPSEGGKGPAVANDFPPTADLSEKDRMRVLVTGGAGFVGSHLVDALMKMGHDVIVLDNFFTGRQKNVQHWIGHPSFHLITHDVVEPIKLEVDQIYHLACPASPPHYQYNPIKTIKTSTQGTLNMLGLAKRTGARMLLTSTSEV 537
            MVE E+ RR    +  L+ S   T+P E  +  A A   P  A L E +R R+LVTGGAGFVGSHLVD LM  GH+VIVLDN FTGR+KNVQHWIGHP F LI HDVVEPI LE+DQIYHLACPASPPHYQYNPIKTIKTSTQGTLNMLGLAKRTGARMLLTSTSEV
Sbjct:   54 MVERELDRRNSALEAHLVTSLMVTMPDELVENGA-APKHPAVAQLPESERKRILVTGGAGFVGSHLVDRLMTQGHEVIVLDNMFTGRKKNVQHWIGHPHFQLIIHDVVEPIMLEIDQIYHLACPASPPHYQYNPIKTIKTSTQGTLNMLGLAKRTGARMLLTSTSEV 219
[Close]
BLAST of mRNA_Ecto-sp13_S_contig19744.6381.1 vs. uniprot
Match: A0A4D9D2V9_9STRA (UDP-glucuronate decarboxylase n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D2V9_9STRA)

HSP 1 Score: 228 bits (581), Expect = 1.290e-69
Identity = 119/172 (69.19%), Postives = 135/172 (78.49%), Query Frame = 1 
Query:   22 SSRVQEMVEVEVQRRVQQQVSLLNSEPHTLPSEGGKGPAVANDFPPTADLSEKDRMRVLVTGGAGFVGSHLVDALMKMGHDVIVLDNFFTGRQKNVQHWIGHPSFHLITHDVVEPIKLEVDQIYHLACPASPPHYQYNPIKTIKTSTQGTLNMLGLAKRTGARMLLTSTSEV 537
            S+ ++++++ E+  +V ++V+ +N   H     GGK       FPPTA L E  RMRVLVTGGAGFVGSHLVD LM  GH+VIV+DN FTGR+KNV HWIGHP F LI HDVVEPI LEVDQIYHLACPASPPHYQYNPIKTIKTST GTLNMLGLAKR  ARMLLTSTSEV
Sbjct:   98 SAALRDVIQHEISHQVHERVNAMNKA-HQAAGWGGKV------FPPTATLPESQRMRVLVTGGAGFVGSHLVDRLMAEGHEVIVVDNMFTGRKKNVAHWIGHPHFMLIVHDVVEPILLEVDQIYHLACPASPPHYQYNPIKTIKTSTMGTLNMLGLAKRVRARMLLTSTSEV 262
[Close]
BLAST of mRNA_Ecto-sp13_S_contig19744.6381.1 vs. uniprot
Match: A0A4D9CY17_9STRA (UDP-glucuronate decarboxylase n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CY17_9STRA)

HSP 1 Score: 220 bits (561), Expect = 9.790e-67
Identity = 113/153 (73.86%), Postives = 119/153 (77.78%), Query Frame = 1 
Query:  100 PHTLPSEGGKGPAVAND-------FPPTADLSEKDRMRVLVTGGAGFVGSHLVDALMKMGHDVIVLDNFFTGRQKNVQHWIGHPSFHLITHDVVEPIKLEVDQIYHLACPASPPHYQYNPIKTIKTSTQGTLNMLGLAKRTGARMLLTSTSEV 537
            PH  P   G G    +        +PPTA LSE  R R+LVTGGAGFVGSHLVD LM  GH+VIV+DN FTGR+KNV HWIGHP F LI HDVVEPI LEVDQIYHLACPASPPHYQYNPIKTIKTST GTLNMLGLAKR  ARMLLTSTSEV
Sbjct:  117 PHARPGTLGDGERTVSRQEQLGQLYPPTATLSEGQRRRILVTGGAGFVGSHLVDRLMAEGHEVIVVDNMFTGRKKNVAHWIGHPHFMLIVHDVVEPILLEVDQIYHLACPASPPHYQYNPIKTIKTSTMGTLNMLGLAKRVRARMLLTSTSEV 269
[Close]
BLAST of mRNA_Ecto-sp13_S_contig19744.6381.1 vs. uniprot
Match: K8YTX9_NANGC (UDP-glucuronate decarboxylase n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8YTX9_NANGC)

HSP 1 Score: 221 bits (563), Expect = 1.050e-66
Identity = 113/153 (73.86%), Postives = 119/153 (77.78%), Query Frame = 1 
Query:  100 PHTLPSEGGKGPAVAND-------FPPTADLSEKDRMRVLVTGGAGFVGSHLVDALMKMGHDVIVLDNFFTGRQKNVQHWIGHPSFHLITHDVVEPIKLEVDQIYHLACPASPPHYQYNPIKTIKTSTQGTLNMLGLAKRTGARMLLTSTSEV 537
            PH  P   G G    +        +PPTA LSE  R R+LVTGGAGFVGSHLVD LM  GH+VIV+DN FTGR+KNV HWIGHP F LI HDVVEPI LEVDQIYHLACPASPPHYQYNPIKTIKTST GTLNMLGLAKR  ARMLLTSTSEV
Sbjct:  127 PHARPGTRGDGERTVSRQEQLGQLYPPTATLSEGQRRRILVTGGAGFVGSHLVDRLMAEGHEVIVVDNMFTGRKKNVAHWIGHPHFMLIVHDVVEPILLEVDQIYHLACPASPPHYQYNPIKTIKTSTMGTLNMLGLAKRVRARMLLTSTSEV 279
[Close]
BLAST of mRNA_Ecto-sp13_S_contig19744.6381.1 vs. uniprot
Match: A0A401P7C4_SCYTO (UDP-glucuronic acid decarboxylase 1 (Fragment) n=1 Tax=Scyliorhinus torazame TaxID=75743 RepID=A0A401P7C4_SCYTO)

HSP 1 Score: 208 bits (529), Expect = 3.300e-65
Identity = 102/175 (58.29%), Postives = 135/175 (77.14%), Query Frame = 1 
Query:   13 YVSSSRVQEMVEVEVQRRVQQQVSLLNSEPHTLPSEGGKGPAVANDFPPTADLSEKDRMRVLVTGGAGFVGSHLVDALMKMGHDVIVLDNFFTGRQKNVQHWIGHPSFHLITHDVVEPIKLEVDQIYHLACPASPPHYQYNPIKTIKTSTQGTLNMLGLAKRTGARMLLTSTSEV 537
            +VS   +QE  E +++R++++ ++ L  +   + +      +++  +PP   L+EKDR R+L+TGGAGFVGSHL D LM  GH+V V+DNFFTGR++NV+HWIGH +F LI HDVVEP+ +EVDQIYHLA PASPP+Y YNPIKT+KT+T GTLNMLGLAKR GAR+LL STSEV
Sbjct:   34 FVSMRSLQEEGEQKIERKIEEALAPLKEKIREIET------SISQKYPPVKFLTEKDRKRILITGGAGFVGSHLADKLMMDGHEVTVVDNFFTGRKRNVEHWIGHENFELINHDVVEPLYIEVDQIYHLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRVGARLLLASTSEV 202
[Close]
BLAST of mRNA_Ecto-sp13_S_contig19744.6381.1 vs. uniprot
Match: A0A7S3H6G5_9STRA (UDP-glucuronate decarboxylase n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3H6G5_9STRA)

HSP 1 Score: 214 bits (544), Expect = 1.140e-64
Identity = 102/129 (79.07%), Postives = 113/129 (87.60%), Query Frame = 1 
Query:  151 FPPTADLSEKDRMRVLVTGGAGFVGSHLVDALMKMGHDVIVLDNFFTGRQKNVQHWIGHPSFHLITHDVVEPIKLEVDQIYHLACPASPPHYQYNPIKTIKTSTQGTLNMLGLAKRTGARMLLTSTSEV 537
            FP    L +++RMR+LVTGG+GFVGSHLVD LM  GH VIV+DN FTGRQ+NV HW+GHP+F LI HDV+EPI LEVDQIYHLACPASPPHYQYNPIKTIKTST+GTLNMLGLAKR  ARMLLTSTSEV
Sbjct:  103 FPEVKILPDRERMRILVTGGSGFVGSHLVDRLMIAGHQVIVVDNMFTGRQRNVAHWLGHPNFQLIIHDVIEPIMLEVDQIYHLACPASPPHYQYNPIKTIKTSTEGTLNMLGLAKRVKARMLLTSTSEV 231
[Close]
BLAST of mRNA_Ecto-sp13_S_contig19744.6381.1 vs. uniprot
Match: A0A6V1P8H7_HETAK (UDP-glucuronate decarboxylase n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1P8H7_HETAK)

HSP 1 Score: 213 bits (543), Expect = 1.360e-64
Identity = 108/174 (62.07%), Postives = 129/174 (74.14%), Query Frame = 1 
Query:   16 VSSSRVQEMVEVEVQRRVQQQVSLLNSEPHTLPSEGGKGPAVANDFPPTADLSEKDRMRVLVTGGAGFVGSHLVDALMKMGHDVIVLDNFFTGRQKNVQHWIGHPSFHLITHDVVEPIKLEVDQIYHLACPASPPHYQYNPIKTIKTSTQGTLNMLGLAKRTGARMLLTSTSEV 537
            V    ++ MV VE+ ++ +  + +   +  TL     +       +P    LSE +R R+LVTGGAGFVGSHLVD LM  GH+VIV+DN FTGR++NV HW GHP F L+ HDVVEPI LEVDQIYHLACPASPPHYQ+NPIKTIKTST+GTLNMLGLAKR GAR+LLTSTSEV
Sbjct:   43 VDPETIRAMVRVEMAKKSEAIMQMREDQLATLNFHDRESTVATGRYPQVEILSEAERKRILVTGGAGFVGSHLVDRLMLAGHEVIVVDNMFTGRKQNVGHWFGHPHFTLVEHDVVEPIMLEVDQIYHLACPASPPHYQFNPIKTIKTSTEGTLNMLGLAKRVGARILLTSTSEV 216
[Close]
BLAST of mRNA_Ecto-sp13_S_contig19744.6381.1 vs. uniprot
Match: A0A8C5CL94_GADMO (UDP-glucuronic acid decarboxylase 1 n=6 Tax=Euteleosteomorpha TaxID=1489388 RepID=A0A8C5CL94_GADMO)

HSP 1 Score: 213 bits (541), Expect = 1.810e-64
Identity = 105/175 (60.00%), Postives = 133/175 (76.00%), Query Frame = 1 
Query:   13 YVSSSRVQEMVEVEVQRRVQQQVSLLNSEPHTLPSEGGKGPAVANDFPPTADLSEKDRMRVLVTGGAGFVGSHLVDALMKMGHDVIVLDNFFTGRQKNVQHWIGHPSFHLITHDVVEPIKLEVDQIYHLACPASPPHYQYNPIKTIKTSTQGTLNMLGLAKRTGARMLLTSTSEV 537
            Y +   +QE+ E+++++R+ + V+ L  + H L        +    +PP   LSEKDR R+L+TGGAGFVGSHL D LM  GH+V V+DNFFTGR++NV+HWIGH +F LI HDVVEP+ +EVDQIYHLA PASPP+Y YNPIKT+KT+T GTLNMLGLAKR GAR+LL STSEV
Sbjct:   35 YTNMRSIQELSEMKIEQRIDEAVAPLREKIHDLEL------SFTQKYPPVKFLSEKDRKRILITGGAGFVGSHLTDKLMMDGHEVTVVDNFFTGRKRNVEHWIGHENFELINHDVVEPLYIEVDQIYHLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRVGARLLLASTSEV 203
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig19744.6381.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KWP6_9PHAE2.670e-119100.00UDP-glucuronate decarboxylase n=2 Tax=Ectocarpus T... [more]
W7TKX8_9STRA1.190e-7169.19UDP-glucuronate decarboxylase (Fragment) n=1 Tax=N... [more]
A0A836C7X9_9STRA3.170e-7073.05UDP-glucuronate decarboxylase n=1 Tax=Tribonema mi... [more]
A0A4D9D2V9_9STRA1.290e-6969.19UDP-glucuronate decarboxylase n=1 Tax=Nannochlorop... [more]
A0A4D9CY17_9STRA9.790e-6773.86UDP-glucuronate decarboxylase n=1 Tax=Nannochlorop... [more]
K8YTX9_NANGC1.050e-6673.86UDP-glucuronate decarboxylase n=1 Tax=Nannochlorop... [more]
A0A401P7C4_SCYTO3.300e-6558.29UDP-glucuronic acid decarboxylase 1 (Fragment) n=1... [more]
A0A7S3H6G5_9STRA1.140e-6479.07UDP-glucuronate decarboxylase n=1 Tax=Spumella elo... [more]
A0A6V1P8H7_HETAK1.360e-6462.07UDP-glucuronate decarboxylase n=1 Tax=Heterosigma ... [more]
A0A8C5CL94_GADMO1.810e-6460.00UDP-glucuronic acid decarboxylase 1 n=6 Tax=Eutele... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig19744contigEcto-sp13_S_contig19744:156..2887 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score344.4
Seed ortholog evalue3.3e-92
Seed eggNOG ortholog2880.D7FQ60
Model size537
KEGG rclassRC00508
KEGG koko:K08678
KEGG ReactionR01384
KEGG Pathwayko00520,ko01100,map00520,map01100
KEGG ModuleM00361
Hectar predicted targeting categoryother localisation
Exons5
EggNOG free text desc.UDP-glucuronate decarboxylase activity
EggNOG OGsCOG0451@1,KOG1429@2759
EC4.1.1.35
Cds size537
COG Functional cat.GM
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462996.9014604-CDS-Ecto-sp13_S_contig19744:155..3201681462996.9014604-CDS-Ecto-sp13_S_contig19744:155..320Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19744 156..320 -
1681462996.9218097-CDS-Ecto-sp13_S_contig19744:1378..14541681462996.9218097-CDS-Ecto-sp13_S_contig19744:1378..1454Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19744 1379..1454 -
1681462996.9346983-CDS-Ecto-sp13_S_contig19744:1737..18421681462996.9346983-CDS-Ecto-sp13_S_contig19744:1737..1842Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19744 1738..1842 -
1681462996.9438605-CDS-Ecto-sp13_S_contig19744:2200..23491681462996.9438605-CDS-Ecto-sp13_S_contig19744:2200..2349Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19744 2201..2349 -
1681462996.9550962-CDS-Ecto-sp13_S_contig19744:2845..28871681462996.9550962-CDS-Ecto-sp13_S_contig19744:2845..2887Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19744 2846..2887 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig19744.6381.1prot_Ecto-sp13_S_contig19744.6381.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig19744 156..2887 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig19744.6381.1

>prot_Ecto-sp13_S_contig19744.6381.1 ID=prot_Ecto-sp13_S_contig19744.6381.1|Name=mRNA_Ecto-sp13_S_contig19744.6381.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=179bp
RSDEYVSSSRVQEMVEVEVQRRVQQQVSLLNSEPHTLPSEGGKGPAVAND
FPPTADLSEKDRMRVLVTGGAGFVGSHLVDALMKMGHDVIVLDNFFTGRQ
KNVQHWIGHPSFHLITHDVVEPIKLEVDQIYHLACPASPPHYQYNPIKTI
KTSTQGTLNMLGLAKRTGARMLLTSTSEV
back to top

mRNA from alignment at Ecto-sp13_S_contig19744:156..2887-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig19744.6381.1 ID=mRNA_Ecto-sp13_S_contig19744.6381.1|Name=mRNA_Ecto-sp13_S_contig19744.6381.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2732bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19744:156..2887- (Ectocarpus species13 EcNAP12_S_4_19m)
AGGTCCGATGAGTACGTTTCTTCGAGCAGGGTGCAGGAGATGGTGAGAGA
ATATATATATATTTTTGTTTTATCTTGTTTCCGACTTCGCTTTTTCGCCA
CAGGGCACACACACCCGTCGAACGTGGTCCGTGTAACCCTCTGAAAAAGC
GCATGGGTACTTAATCAGCGTGCGCGCGTAGGTCTCGAGTATCACGGTAG
CCTGTAGTTCTGCGTGTTCTGCGTGCCCGTTTCGCTATTGAGTCGCGACG
CTCGTCAAGATAAAGCCAACACGCGTTCGTCTGGTGAGTGCGTGAGGAAA
GAGTGGTGGTGGTGCGGCTGGTCAGTGGCTTCCTAGCACACCGTACCAGC
TTCCATCTCGATGCCTACGAAAGGGGTTGCATGTACAAGGGGTCTTTCTG
GCGGCGTGCTTCCTCTCGAGCCGAAAAACACCCCACGCCGCCCACCCGTG
AATGTGTCGGGCTTTTCCCCTATTAATAAATACAACACGTCAATGAAGTG
CACGCTGGATCGCACCCTGACTGATAAACACACCGCAGGTTGAGGTGGAG
GTGCAGCGTCGAGTACAGCAGCAGGTGTCGCTGCTGAATTCGGAACCCCA
CACGCTGCCTTCGGAAGGAGGAAAAGGGCCAGCCGTGGCCAACGATTTCC
CGCCTACGGCCGACCTTTCCGAGAAGGACCGCATGCGGTAAGCGTAGCCG
TATACTTGGCGTGGTGGAGTGTGAGGTGCGAGTCGCGACAGTGGCCTGTT
GTTCTGTGGGTGTTGCCGGCAGAAAACGGGTTTCTGTCTGTTGATGTGAA
GCTTTTGGTGCTGCGATGCTGGCAGCAAAGGAGACAGCGGTCGCCAAGGC
CACCCTTCGCGGTCACCCAGGGTCCCCTTTCTCTCCCTGTTACACTCCTC
TCTGAGGCTGAAAAAATAAGTTTCTCCAATATTGGATTGTCTCACACCTC
TTGGTGTCGTTTTTCCTCTTCGTTGTATTGGATTGTCGAAGTCTGTTTGG
TACCCTTACCCCTCTTTGTTTTTTTTCTCGTCCGGGAACCGCCAGCGTGC
TGGTCACCGGCGGGGCGGGCTTCGTGGGTTCTCACCTGGTGGACGCTCTG
ATGAAGATGGGGCACGATGTCATCGTGCTAGACAATTTCTTCACGGGAAG
GTGTGTCAAACGTATGCGTGTGTGTGACGGCCGGTGAGTGGAGAGAAGTA
TTGAGACGGAGAGAGAGAGGGAGAAGACGGAGAATAGACAAAAGCAAGAG
AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAGAAAGAGAGAGA
GAAAGAGAGAGAAAGATGGATAGCGAGACAAGTCGTGTACAGAATACGCT
GCGGTGCACTGCCACGAAGGCGACAAACGAGTTATCCTCGACATGTACGA
CAAACCGTGGTTTTGATGACCCCGCCACCTCAGGCAGAAGAATGTGCAGC
ACTGGATAGGACACCCAAGCTTTCATCTCATAACGCACGACGTCGTGGAG
CCAATCAAAGTGAGAGATAGACCGATGAGCCCTTGTATACACTGTAGACA
GGACCCTAAATAGTTGTCTGCGGTCTGGTTCGTTTTGTTTTCTTTCGGTC
AATTTGCCCGACTACTAGACTTGGGTGTTGCCGGTTTGAGTTATTAGCAC
ATGGAGCTAGCAGCGGAGACCAGCCCTATCTGCATGGACACGAAATAGAG
CCCCCAACAACGCCGATATGCTCTGTGTGGTGGGTGCTTCTGTTGGTGTT
CGTTCCAGCGGGTGGCGCTTCCAATGCTCCACACGCACCACACGCCGGCC
TAAGAACAGGACGAGTGTCAAGAGGGAGTTGGGTGTTAGGCCTTGTTGCT
GGTAGTCTTTCGACACCGTAGTACGTCCTTGCTTACCATGCTGCATAGAC
CGTATCACTGCGCGGCAATCTTAGTTTCCCTGTATCGTCTTCGCGACATT
GTTCCAATAGGCTGAGTGGGCCGTGCTCTTTTTGTTACCCCTGGTTTCCG
AGGTTTCTGCCGTGGCATGCGCAAGCCACCCGACGTGGATGAATTCCTTC
GTGTCTTGTCCTCCTGCTTGGGCTGCCTCGTGTGCTCCACGTTGAATTGT
TCGCAGGATTCTATTCAGAAATGTGCCGTTGTGTTTGGCCTTTTGCACCT
AACGCGGCGACTTGCGTCCATCGCGTGGTTGTGCCTGGTATGGTTGCTGT
CGAGCTAGACGTGATCTCGTGCCTGCGCGGCTTGGACCAACACCATCTGT
AGCTGGCCAGCCTGTAGCCGTGCCTCCTTTTTTGCTCTTTGCGTGCGTGT
TCGCGGCGTGGAAGAGGTCCTAATCCACCTTGACCTCCATAACTGATCGC
GCGCGCCCCGGCTGCCTGCAACCCCAGTGGTTGCTATTTTGTTGCTGCCC
TGCGTTGTCGCAGGTCGATACCAAGTGCGGCTGGGACGGCTCCATTGCAG
ATTTGTCACCTAATGGCTCTCAGTGTAGCAAAGTATGCCGTGCGTTGATC
CTGTTTGCCTCACGCGCCCCTTTACCGTTTGTTGCGAAATGCCGATGCTT
GTATCGAAAATGCGAAGCTCGAGGTAGACCAGATTTATCACCTGGCTTGC
CCAGCATCACCACCTCACTACCAGTACAACCCCATCAAGACCATCAAAAC
CAGCACCCAAGGCACGCTAAATATGCTCGGGCTTGCCAAGCGGACAGGCG
CGAGGATGCTTCTCACCAGCACCTCAGAGGTA
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig19744:156..2887-

>mRNA_Ecto-sp13_S_contig19744.6381.1 ID=mRNA_Ecto-sp13_S_contig19744.6381.1|Name=mRNA_Ecto-sp13_S_contig19744.6381.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=537bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19744:156..2887- (Ectocarpus species13 EcNAP12_S_4_19m)
AGGTCCGATGAGTACGTTTCTTCGAGCAGGGTGCAGGAGATGGTTGAGGT
GGAGGTGCAGCGTCGAGTACAGCAGCAGGTGTCGCTGCTGAATTCGGAAC
CCCACACGCTGCCTTCGGAAGGAGGAAAAGGGCCAGCCGTGGCCAACGAT
TTCCCGCCTACGGCCGACCTTTCCGAGAAGGACCGCATGCGCGTGCTGGT
CACCGGCGGGGCGGGCTTCGTGGGTTCTCACCTGGTGGACGCTCTGATGA
AGATGGGGCACGATGTCATCGTGCTAGACAATTTCTTCACGGGAAGGCAG
AAGAATGTGCAGCACTGGATAGGACACCCAAGCTTTCATCTCATAACGCA
CGACGTCGTGGAGCCAATCAAACTCGAGGTAGACCAGATTTATCACCTGG
CTTGCCCAGCATCACCACCTCACTACCAGTACAACCCCATCAAGACCATC
AAAACCAGCACCCAAGGCACGCTAAATATGCTCGGGCTTGCCAAGCGGAC
AGGCGCGAGGATGCTTCTCACCAGCACCTCAGAGGTA
back to top