mRNA_Ecto-sp13_S_contig19741.6380.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig19741.6380.1
Unique NamemRNA_Ecto-sp13_S_contig19741.6380.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig19741.6380.1 vs. uniprot
Match: A0A6H5JQP5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQP5_9PHAE)

HSP 1 Score: 153 bits (386), Expect = 3.170e-43
Identity = 95/107 (88.79%), Postives = 96/107 (89.72%), Query Frame = 1 
Query:    1 MDQTTSVNSMPPAPIFGVTPGGDGNGSMGNSKFINIDEIFADCFMDGDSDLLGLGGTGAQGGAAEGQGADNMGXXXXXXXXXXXXXE------ELNLNPNAAISASG 303
            MDQTTSVNSMPPAPIFGVTPGGDGNG MGNSKFINIDEIFADCFMDGDSDLLGLGGTGAQG AAEGQGAD+MG XXXXXXXXXXXX        LNLNPNAAISASG
Sbjct:    1 MDQTTSVNSMPPAPIFGVTPGGDGNGGMGNSKFINIDEIFADCFMDGDSDLLGLGGTGAQGEAAEGQGADSMGGXXXXXXXXXXXXXXXXXELSLNLNPNAAISASG 107
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BLAST of mRNA_Ecto-sp13_S_contig19741.6380.1 vs. uniprot
Match: A0A835YVH1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVH1_9STRA)

HSP 1 Score: 52.8 bits (125), Expect = 8.090e-6
Identity = 25/52 (48.08%), Postives = 35/52 (67.31%), Query Frame = 1 
Query:    7 QTTSVNSMPPAPIFGVTPGGDGNGSMGNSKFINIDEIFADCFMDGDSDLLGL 162
            + + ++S P  P+FG+  G DG      +K+INIDEIFADCFM+ D DL+ L
Sbjct:    2 EASGLSSTPQPPLFGMAGGTDG----AQNKYINIDEIFADCFMESDPDLMTL 49
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig19741.6380.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JQP5_9PHAE3.170e-4388.79Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835YVH1_9STRA8.090e-648.08Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig19741contigEcto-sp13_S_contig19741:2918..3220 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size303
Hectar predicted targeting categoryother localisation
Exons1
Cds size303
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462996.8538523-CDS-Ecto-sp13_S_contig19741:2917..32201681462996.8538523-CDS-Ecto-sp13_S_contig19741:2917..3220Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19741 2918..3220 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig19741.6380.1prot_Ecto-sp13_S_contig19741.6380.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig19741 2918..3220 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig19741.6380.1

>prot_Ecto-sp13_S_contig19741.6380.1 ID=prot_Ecto-sp13_S_contig19741.6380.1|Name=mRNA_Ecto-sp13_S_contig19741.6380.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=101bp
MDQTTSVNSMPPAPIFGVTPGGDGNGSMGNSKFINIDEIFADCFMDGDSD
LLGLGGTGAQGGAAEGQGADNMGGGGGGGGGRAGGGEELNLNPNAAISAS
G
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mRNA from alignment at Ecto-sp13_S_contig19741:2918..3220-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig19741.6380.1 ID=mRNA_Ecto-sp13_S_contig19741.6380.1|Name=mRNA_Ecto-sp13_S_contig19741.6380.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=303bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19741:2918..3220- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGATCAGACAACGAGCGTGAACTCGATGCCGCCGGCGCCCATCTTCGG
CGTCACCCCGGGCGGGGACGGCAACGGCAGCATGGGCAACAGTAAGTTCA
TAAACATCGATGAGATCTTCGCCGACTGCTTCATGGACGGCGACAGCGAC
CTTCTCGGCTTGGGTGGGACCGGGGCCCAGGGGGGAGCCGCAGAAGGGCA
GGGCGCTGATAACATGGGGGGCGGCGGCGGCGGCGGCGGCGGTAGGGCGG
GAGGAGGAGAGGAGTTGAATTTGAATCCAAACGCAGCGATTTCTGCTTCC
GGT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig19741:2918..3220-

>mRNA_Ecto-sp13_S_contig19741.6380.1 ID=mRNA_Ecto-sp13_S_contig19741.6380.1|Name=mRNA_Ecto-sp13_S_contig19741.6380.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=303bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19741:2918..3220- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGATCAGACAACGAGCGTGAACTCGATGCCGCCGGCGCCCATCTTCGG
CGTCACCCCGGGCGGGGACGGCAACGGCAGCATGGGCAACAGTAAGTTCA
TAAACATCGATGAGATCTTCGCCGACTGCTTCATGGACGGCGACAGCGAC
CTTCTCGGCTTGGGTGGGACCGGGGCCCAGGGGGGAGCCGCAGAAGGGCA
GGGCGCTGATAACATGGGGGGCGGCGGCGGCGGCGGCGGCGGTAGGGCGG
GAGGAGGAGAGGAGTTGAATTTGAATCCAAACGCAGCGATTTCTGCTTCC
GGT
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