mRNA_Ecto-sp13_S_contig1974.6377.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig1974.6377.1 vs. uniprot
Match: D7FKD5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKD5_ECTSI) HSP 1 Score: 1459 bits (3777), Expect = 0.000e+0 Identity = 768/864 (88.89%), Postives = 795/864 (92.01%), Query Frame = 1
Query: 1 MKAKGGGQVRKGTQVDCLFGDEYFRGKVDDTDCGGSSYRVIFDDGDVREDAPPEDLELPLEQGCRVECMFEGEDGYFDGIISIDNGDATYKVDFDDGDVLDAAPRHDIHVLSWPHEESAPSSAMTAEDNSTNVAEQEGKGFDTRYSDRSHNKAESEGNREVQKDGENSKGISAAYGELPPGEATHDSPHRSQPSSEVDGSEDGCGRARDEKAGTSQHGSTRRDLGSSSGEPQRRHDSWTGRESRGTPSNRNEPTTELVQASSLYVPTSPNPLHAHLEALAAAAPRLLAEAPPDFRLSAISHRIAVLEEQLRQQEARGEAWHLPVFSAETPLHPADPSLRGRPERQGESNPEQAPGSGGEGSPRATTARGGAAAPSFPAHAELRKVAEDLSTLRMKQARGTHPDFSRRLCYGDASLEMVQAIADLADGYAKEDLWPQASNSIVSNHMARAADILARDKGSRFPGNGLFLTAPPRGGTYVNPRLRFEGHSGLRGDEPRGACTEGPRARGLAFPTENRYSDPALCRSLTPARSARLLLELVKGLRLSVVEGGERGQVEREKFEVFISTHKDKALRSARPRLLVEAQMPSNCGWGAALGCLRRYSPFFADLNLKIMEGMQQKQAAKVRLAFQAVDPDGTGCAEAEILALMVADDEEDKVVEGGVGTARQRLRSLLHIRVQTLTGRCETHTNRLPAACRNLSEALAELERLGLGEACSSVQVLNALTDALALTHQRHQEISSIKAKKLAETWIQGKEGQDLWKQECKRLVLECRRRLEVVPRAEIEERTRQALVTYRSKILTRELGGKEKELDTAEDYLVRAWEILESRHGRNDPDVGAACISLGNLAIIRRRLNEAIDWFRRALGTFE 2592
MKA+GGGQVRKGT+VDCLFGDEYFRGKVDDTD GSSYRVIFDDGD+REDAPPEDLELPLEQGCRVECMFEGEDGYFDG+ISIDNGDATYKVDFDDGDVLDAAPRHDI VLSW HEESAPS A+TAEDN+TNVAEQEG GFDTRYSDRSHN+AESEGNRE QKD ENSK ISAA+GELPP E THDSP + Q SEVDGSEDG GRA DE AGTSQHGS+ R LGSSSGEPQR HDSWTGRE RGT SNRNEPTTELVQASSLYVPTSPNPLHAHLEALAAAAPRLLAEAPPDFRLSAISHRIAVLEEQLRQQEARGEAWHLPVFSAETPLHPADPSLRGR ERQG S+PEQA GSGGEGSPRATTARGGAAAPSFPAHAELR+VAEDLSTLRMKQ RLCYGDASLEMVQAIADLADGYAKEDLWPQ VSNHMARAADILARDKGSR PGNG F+TA P GGTYV+PRLRF+GHSGLRGDEPRG EG RARGLAFPTENRYSDPALCRSLT ARSARLLLEL+KGLRLSVVEGGERGQVERE FE F+STHKDKALRSAR RLL+EAQMPSNCGWGAALGCLRR SP FADLNLKIMEG+QQKQAAKVRLAFQAVDPDGTGCAE+EILALMVADDEE+ VEG VG A QRLRSLLH+RVQTLTGRCETHTNRL AA RNLSEALAELERLGLGEA SV VLNALTDALALTH+RHQE+SSIKAKKLAETWIQGKEGQDLWKQECKRLVLECRRRLEVVPRAEIEERT QALV YRSKILTRELGGK KELDTAEDYLVR WEILESRHGRNDPDVGAAC+SLG+LA+IRRRLNEAIDWFRRALGTFE
Sbjct: 1 MKAEGGGQVRKGTRVDCLFGDEYFRGKVDDTDGSGSSYRVIFDDGDIREDAPPEDLELPLEQGCRVECMFEGEDGYFDGVISIDNGDATYKVDFDDGDVLDAAPRHDIRVLSWSHEESAPSKAVTAEDNNTNVAEQEGTGFDTRYSDRSHNEAESEGNREAQKDDENSKVISAAHGELPPVEETHDSPRQPQRFSEVDGSEDGYGRAGDEPAGTSQHGSSPRHLGSSSGEPQRIHDSWTGRELRGTLSNRNEPTTELVQASSLYVPTSPNPLHAHLEALAAAAPRLLAEAPPDFRLSAISHRIAVLEEQLRQQEARGEAWHLPVFSAETPLHPADPSLRGRLERQGRSDPEQATGSGGEGSPRATTARGGAAAPSFPAHAELRQVAEDLSTLRMKQIALV------RLCYGDASLEMVQAIADLADGYAKEDLWPQ-----VSNHMARAADILARDKGSRVPGNGFFITATPGGGTYVDPRLRFKGHSGLRGDEPRGGYPEGQRARGLAFPTENRYSDPALCRSLTQARSARLLLELLKGLRLSVVEGGERGQVERENFEAFLSTHKDKALRSARHRLLLEAQMPSNCGWGAALGCLRRNSPLFADLNLKIMEGVQQKQAAKVRLAFQAVDPDGTGCAESEILALMVADDEEETAVEGRVGVAWQRLRSLLHVRVQTLTGRCETHTNRLAAASRNLSEALAELERLGLGEASGSVPVLNALTDALALTHRRHQEMSSIKAKKLAETWIQGKEGQDLWKQECKRLVLECRRRLEVVPRAEIEERTWQALVAYRSKILTRELGGKGKELDTAEDYLVRVWEILESRHGRNDPDVGAACVSLGSLAVIRRRLNEAIDWFRRALGTFE 853
BLAST of mRNA_Ecto-sp13_S_contig1974.6377.1 vs. uniprot
Match: A0A6H5JCV6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCV6_9PHAE) HSP 1 Score: 923 bits (2385), Expect = 0.000e+0 Identity = 525/772 (68.01%), Postives = 552/772 (71.50%), Query Frame = 1
Query: 1 MKAKGGGQVRKGTQVDCLFGDEYFRGKVDDTDCGGSSYRVIFDDGDVREDAPPEDLELPLEQGCRVECMFEGEDGYFDGIISIDNGDATYKVDFDDGDVLDAAPRHDIHVLSWPHEESAPSSAMTAEDNSTNVAEQEGKGFDTRYSDRSHNKAESEGNREVQKDGENSKGISAAYGELPPGEATHDSPHRSQPSSEVDGSEDGCGRARDEKAGTSQH--------------------------------------------------GSTR---RDLGSSSGEPQRRHDSWTGRESRGTPSNRNEPTTELVQASSLYVPTSPNPLHAHLEALAAAAPRLLAEAPPDFRLSAISHRIAVLEEQLRQQ------------EARGEAWHLPVFSAETPLHPADPSLRGRPERQGESNPEQ----APGSGGEGSPRATTARGGAAAPSFPAHAELRKVAEDLSTLRMKQARG---------------------THPDFSR-------RLCYGDASLEMVQAIADLADGYAKEDLWPQASNSIV------------------------------------------------------------SNHMARAADILARDKGSRFPGNGLFLTAPPRGGTYVNPRLRFEGHSGLRGDEPRGACTEGPRARGLAFPTENR----YSDPALCRSLTPARSARLLLELVKGLRLSVVEGGERGQVEREKFEVFISTHKDKALRSARPRLLVEAQMPSNCGWGAALGCLRRYSPFFADLNLKI 1833
MKA+GGGQVRKGT+VDCLFGDEYFRGKVDDTD GGSSYRVIFDDGD+REDAPPEDLE+PLEQGCRVECMFEGEDGYFDG+IS DNGDATYKVDFDDGDVLDAAPRHDI VLSWPHEES P++A+TAEDN TNV EQEGK DT YS+RSHN+AESEGNRE QK+ +NSKGISAA+GELPP E THD PHR Q SEV GSEDG GR DE AGTSQH STR D GSSSGEPQR HDS TGR GTPSNR+EPT ELVQA SLYVPTSPNPLHAHLEALAAAAP LLAEAPPDFRLSA SHRIA LEEQLRQQ EARGEAWHLPVFSA+TPLHPADPSL GRPERQG S PEQ A GSGGEGS RAT ARGGAAAPSFPAH ELR+V EDLSTLRMKQAR + FS RLCYGDASLEMVQAIADLADGYAKEDLWPQASNS+V SNHMARAADILARDKGSRFPG G F+ A P GGTYV+PRLRFE HSGLRGDEPRG CTEG RARGLAFPTENR YSDPALCRS+TPAR+ARLLLEL+KGLRLSVVEGGERGQVEREKFEVF+STH+DKALRSARPRLL+EAQMP NCGWGAALGCLRR SPFF DLNLK+
Sbjct: 1 MKAEGGGQVRKGTRVDCLFGDEYFRGKVDDTDGGGSSYRVIFDDGDIREDAPPEDLEIPLEQGCRVECMFEGEDGYFDGVISTDNGDATYKVDFDDGDVLDAAPRHDIRVLSWPHEESVPTNAVTAEDNYTNVTEQEGKALDTGYSNRSHNEAESEGNREAQKNDDNSKGISAAHGELPPREETHDPPHRPQRFSEVGGSEDGYGRTGDEPAGTSQHXXXXXXXXXXXXXXXXXXXXSVNYGDNGIAQETRDCDFGHDICSRVKETRSSTRSGEEDPGSSSGEPQRNHDSCTGRNLWGTPSNRDEPTAELVQAPSLYVPTSPNPLHAHLEALAAAAPHLLAEAPPDFRLSATSHRIAALEEQLRQQVGGVLWPCGKGGEARGEAWHLPVFSAKTPLHPADPSLCGRPERQGRSIPEQVSAEATGSGGEGSSRATKARGGAAAPSFPAHTELRQVVEDLSTLRMKQARSAQLAPVKLMAARETVAAAIMMSRSVFSYIAQIALVRLCYGDASLEMVQAIADLADGYAKEDLWPQASNSVVVGLSTLHRERSRSTRVHPSWVVRRAKRQGEDSVMPLFQVGDEEPTEVLAAVPSVDELLQVSNHMARAADILARDKGSRFPGTGFFIAATPGGGTYVDPRLRFEEHSGLRGDEPRGGCTEGQRARGLAFPTENRCCARYSDPALCRSITPARAARLLLELLKGLRLSVVEGGERGQVEREKFEVFLSTHEDKALRSARPRLLLEAQMPGNCGWGAALGCLRRNSPFFNDLNLKV 772
BLAST of mRNA_Ecto-sp13_S_contig1974.6377.1 vs. uniprot
Match: A0A6H5J7A2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J7A2_9PHAE) HSP 1 Score: 158 bits (399), Expect = 1.230e-41 Identity = 78/87 (89.66%), Postives = 82/87 (94.25%), Query Frame = 1
Query: 2332 AEIEERTRQALVTYRSKILTRELGGKEKELDTAEDYLVRAWEILESRHGRNDPDVGAACISLGNLAIIRRRLNEAIDWFRRALGTFE 2592
++IEERT QALV YRSK+LTRELGGK KELDTAEDYLVRAWEILESR GRNDPDVGAACISLGNLA+IRRRLNEAIDWFRRAL TFE
Sbjct: 19 SQIEERTWQALVAYRSKVLTRELGGKGKELDTAEDYLVRAWEILESRQGRNDPDVGAACISLGNLAVIRRRLNEAIDWFRRALETFE 105
BLAST of mRNA_Ecto-sp13_S_contig1974.6377.1 vs. uniprot
Match: A0A835Z0D6_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z0D6_9STRA) HSP 1 Score: 104 bits (259), Expect = 6.430e-23 Identity = 52/96 (54.17%), Postives = 64/96 (66.67%), Query Frame = 1
Query: 40 QVDCLFGD-EYFRGKVDDTDCGGSSYRVIFDDGDVREDAPPEDLELPLEQGCRVECMFEGEDGYFDGIISIDNGDATYKVDFDDGDVLDAAPRHDI 324
+VDCLF D EY+RG V + G+ YR++FDDGD+R DAP DL PL G RV C F E YF G+I DNGD TY + +DDGD L++A R DI
Sbjct: 10 RVDCLFDDGEYYRGSVAAANADGT-YRIVFDDGDIRHDAPLSDLLSPLLPGTRVSCYFPSEADYFPGVIGADNGDGTYHIRYDDGDELESASRRDI 104 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1974.6377.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 4
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig1974.6377.1 >prot_Ecto-sp13_S_contig1974.6377.1 ID=prot_Ecto-sp13_S_contig1974.6377.1|Name=mRNA_Ecto-sp13_S_contig1974.6377.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=864bp MKAKGGGQVRKGTQVDCLFGDEYFRGKVDDTDCGGSSYRVIFDDGDVREDback to top mRNA from alignment at Ecto-sp13_S_contig1974:822..10810- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig1974.6377.1 ID=mRNA_Ecto-sp13_S_contig1974.6377.1|Name=mRNA_Ecto-sp13_S_contig1974.6377.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=9989bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1974:822..10810- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1974:822..10810- >mRNA_Ecto-sp13_S_contig1974.6377.1 ID=mRNA_Ecto-sp13_S_contig1974.6377.1|Name=mRNA_Ecto-sp13_S_contig1974.6377.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=2592bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1974:822..10810- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |