mRNA_Ecto-sp13_S_contig19739.6375.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig19739.6375.1
Unique NamemRNA_Ecto-sp13_S_contig19739.6375.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig19739.6375.1 vs. uniprot
Match: D7G5U2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G5U2_ECTSI)

HSP 1 Score: 62.8 bits (151), Expect = 4.580e-9
Identity = 26/26 (100.00%), Postives = 26/26 (100.00%), Query Frame = 2 
Query:    2 YKELVHIHPMGKFLAIKTIVFFSWWQ 79
            YKELVHIHPMGKFLAIKTIVFFSWWQ
Sbjct:  291 YKELVHIHPMGKFLAIKTIVFFSWWQ 316
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BLAST of mRNA_Ecto-sp13_S_contig19739.6375.1 vs. uniprot
Match: A0A7S2R496_9STRA (Hypothetical protein n=2 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2R496_9STRA)

HSP 1 Score: 50.4 bits (119), Expect = 9.120e-5
Identity = 19/26 (73.08%), Postives = 23/26 (88.46%), Query Frame = 2 
Query:    2 YKELVHIHPMGKFLAIKTIVFFSWWQ 79
            +K+LVHIHP GKFL IK +VFFS+WQ
Sbjct:  287 HKDLVHIHPFGKFLCIKAVVFFSYWQ 312
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig19739.6375.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G5U2_ECTSI4.580e-9100.00Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S2R496_9STRA9.120e-573.08Hypothetical protein n=2 Tax=Rhizochromulina marin... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig19739contigEcto-sp13_S_contig19739:633..1575 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size356
Hectar predicted targeting categoryother localisation
Exons2
Cds size291
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462996.328002-UTR-Ecto-sp13_S_contig19739:632..6971681462996.328002-UTR-Ecto-sp13_S_contig19739:632..697Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig19739 633..697 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462996.3541949-CDS-Ecto-sp13_S_contig19739:697..9091681462996.3541949-CDS-Ecto-sp13_S_contig19739:697..909Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19739 698..909 -
1681462996.3641062-CDS-Ecto-sp13_S_contig19739:1496..15751681462996.3641062-CDS-Ecto-sp13_S_contig19739:1496..1575Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19739 1497..1575 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig19739.6375.1prot_Ecto-sp13_S_contig19739.6375.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig19739 698..1575 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig19739.6375.1

>prot_Ecto-sp13_S_contig19739.6375.1 ID=prot_Ecto-sp13_S_contig19739.6375.1|Name=mRNA_Ecto-sp13_S_contig19739.6375.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=97bp
VQGAGAYSSHGQVSGHQDHRLLQLVAGIARNLHLLRIVITLRFNDAIAMA
LAMSPFVPPGRQALYGFRVWCIFLAVQSADAWNVVTSFHNGLPCLC*
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mRNA from alignment at Ecto-sp13_S_contig19739:633..1575-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig19739.6375.1 ID=mRNA_Ecto-sp13_S_contig19739.6375.1|Name=mRNA_Ecto-sp13_S_contig19739.6375.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=943bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19739:633..1575- (Ectocarpus species13 EcNAP12_S_4_19m)
GTACAAGGAGCTGGTGCATATTCATCCCATGGGCAAGTTTCTGGCCATCA
AGACCATCGTCTTCTTCAGCTGGTGGCAGGTGCGTCTGGCGTGTTGCTCG
TTGATGACGACGGTTCCGGGTCGTGAGAGTTTAATGGGATGCAGATCGAG
CTGTCCGTCTAGCAGGAGAGTGTTTGAGGTCTTCTGTAGGGTCTCTGCAT
GAGTGCATGTACCATTCGCCTGTTTTCGTGCATCGGGACATCTTTCGTTG
GCGGAACCTAGTGTTTTCTCACGCTTCCTTCTCAGGGGCACGCAGGGGTA
TCGTTGGTACATTACCACGCACACCCGAGGGCTGCGAGCCGCCCGTGGCG
CGTGTGCTTGATGCCCAGCGTTGAAAAAATGGCTCTACACCCTGGCGACG
TGTTCCACGCGAAGAAAGCCTTCGCAAAGAATGCTCTACCCCCGTTTTGC
ATAAACATGCCTTTTGGTTCCTGCGCAACGCGCACAAGTCCCACAGATCA
TGGGCAATATGAATACAGAAGAGCGAGCGATCAAACGCAGCGGAGTGCAG
TGGTAGGACCTGCAGCAAAGACGCCACTGGCCTAGGAGCGCACACTCACG
CTCACGCGAAAAGTCACGACGAGACAAAATAATACCGCACATGACGGACG
CAAATTCCTTCTGCAGGTATCGCGCGAAACCTGCACTTGCTACGGATAGT
CATAACGTTGAGATTCAACGATGCCATCGCGATGGCATTGGCCATGTCGC
CATTCGTTCCCCCCGGGAGGCAAGCCTTGTATGGTTTTCGAGTATGGTGT
ATTTTTCTGGCTGTCCAAAGTGCCGATGCGTGGAATGTCGTCACGTCTTT
TCACAACGGCCTGCCATGTTTGTGTTGAGCGTGAGGGTGTGTTGAGATTT
ATTCTGTCTCTTGTCTCTGATGTGACTTGACGGTTTCCTGTTG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig19739:633..1575-

>mRNA_Ecto-sp13_S_contig19739.6375.1 ID=mRNA_Ecto-sp13_S_contig19739.6375.1|Name=mRNA_Ecto-sp13_S_contig19739.6375.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=291bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19739:633..1575- (Ectocarpus species13 EcNAP12_S_4_19m)
GTACAAGGAGCTGGTGCATATTCATCCCATGGGCAAGTTTCTGGCCATCA
AGACCATCGTCTTCTTCAGCTGGTGGCAGGTATCGCGCGAAACCTGCACT
TGCTACGGATAGTCATAACGTTGAGATTCAACGATGCCATCGCGATGGCA
TTGGCCATGTCGCCATTCGTTCCCCCCGGGAGGCAAGCCTTGTATGGTTT
TCGAGTATGGTGTATTTTTCTGGCTGTCCAAAGTGCCGATGCGTGGAATG
TCGTCACGTCTTTTCACAACGGCCTGCCATGTTTGTGTTGA
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