mRNA_Ecto-sp13_S_contig19734.6373.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig19734.6373.1
Unique NamemRNA_Ecto-sp13_S_contig19734.6373.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig19734.6373.1 vs. uniprot
Match: D7G171_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G171_ECTSI)

HSP 1 Score: 400 bits (1029), Expect = 3.590e-128
Identity = 285/410 (69.51%), Postives = 294/410 (71.71%), Query Frame = -2 
Query:    3 TAIMGSIDGSSAGDPGTAMRGVNLFSGGNVDDSMAGDSDSTSPVDAGGKTGDLSTTPSLDLNLSSVEERMAGLELAGDATTASPPGANASGVDDDDADDVTPPEGDAADPDLTVGESTSSPITGDGTTPACAAAPAQKQCSEPPSPAVTSRLSAADADGSPAAAAAVSGKRASFSPKDTASAEA--APSAEVSPYGARGKLGGGLSTSSTFGASSDDRDDDLLATEFAAGAGVGAPVAEMTLPTLSKAD---KTLPGQQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLGCASRAGMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVEKEAMALAAACVAQQEALNKAPETAEAAATGMEKKAAGVEREGGNEEPEVAGGESGGDK 1217
            TAIMGS+DGSS GDPG+AMRGVNLFSG NVDDSMAGDSDSTSPVDAGGK GDLS TPS DLNLSSVEER+AGLEL GDATTASPPGANASGVDD +AD VTP  GDA D DL VGESTSSPI  +GT PAC AAPAQKQC EPPSPAV  R SAA ADGSP       GKRASF PKDTA+AEA  APSAEVSPYGARGKLGGGLSTSSTFGASSDDRDDD +ATEFA  AGVGAPVAE+TL TL K        PG                                                        GCASRAGM       XXXXXXXXXXXXXXXXXXXXXX       LAAACVA+QEALNKAPETAEAAATG EKKAAGVEREGGNEEPEVAGGESGGDK
Sbjct:  247 TAIMGSVDGSSVGDPGSAMRGVNLFSGANVDDSMAGDSDSTSPVDAGGKAGDLSMTPSFDLNLSSVEERVAGLELGGDATTASPPGANASGVDDGNADGVTPTGGDATDADLAVGESTSSPIADEGTAPACTAAPAQKQCLEPPSPAVAPRSSAAPADGSPXXXXXXXGKRASFPPKDTAAAEAEAAPSAEVSPYGARGKLGGGLSTSSTFGASSDDRDDDFMATEFATDAGVGAPVAEITLSTLPKGGVDGAAAPGASGGAGGSVDAESSVILDEMLVAATGGG---------------------------FGCASRAGMNAPTPGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLAAACVAEQEALNKAPETAEAAATGTEKKAAGVEREGGNEEPEVAGGESGGDK 629
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BLAST of mRNA_Ecto-sp13_S_contig19734.6373.1 vs. uniprot
Match: A0A6H5JAS4_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAS4_9PHAE)

HSP 1 Score: 343 bits (881), Expect = 1.050e-106
Identity = 201/242 (83.06%), Postives = 213/242 (88.02%), Query Frame = -2 
Query:  459 AGDPGTAMRGVNLFSGGNVDDSMAGDSDSTSPVDAGGKTGDLSTTPSLDLNLSSVEERMAGLELAGDATTASPPGANASGVDDDDADDVTPPEGDAADPDLTVGESTSSPITGDGTTPACAAAPAQKQCSEPPSPAVTSRLSAADADGSPAAAAAVSGKRASFSPKDTASAEAAPSAEVSPYGARGKLGGGLSTSSTFGASSDDRDDDLLATEFAAGAGVGAPVAEMTLPTLSKADKTLPGQ 1184
            AGDPG+AMRGV+LFSG NVDDSMAGDSDSTSP DAGGK GDLS TPSLDLNLSSV+ER+AGLELAGDATT SPPGANASG+D    DDVTPPE DAAD DLTVGESTSSPIT +GT PA  AA AQKQC EPPSPAV  R SA  ADG+P+AAAA SGKRASFSPKD A+AEAAPSAEVSPYGARGKLGGGLSTSSTFGASSDDRDDD +ATEFAAGAGVGA VAEMTL TL K ++TLPGQ
Sbjct:  214 AGDPGSAMRGVHLFSGANVDDSMAGDSDSTSPADAGGKAGDLSMTPSLDLNLSSVQERVAGLELAGDATTLSPPGANASGMD---GDDVTPPERDAADADLTVGESTSSPITDEGTAPAFTAALAQKQCLEPPSPAVAPRSSATAADGTPSAAAAASGKRASFSPKDAAAAEAAPSAEVSPYGARGKLGGGLSTSSTFGASSDDRDDDFMATEFAAGAGVGAQVAEMTLTTLPKVEETLPGQ 452
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig19734.6373.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G171_ECTSI3.590e-12869.51Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JAS4_9PHAE1.050e-10683.06Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig19734contigEcto-sp13_S_contig19734:4..1222 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size1221
Hectar predicted targeting categoryother localisation
Exons1
Cds size1218
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462996.2096324-CDS-Ecto-sp13_S_contig19734:3..12211681462996.2096324-CDS-Ecto-sp13_S_contig19734:3..1221Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19734 4..1221 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig19734.6373.1prot_Ecto-sp13_S_contig19734.6373.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig19734 4..1221 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig19734.6373.1

>prot_Ecto-sp13_S_contig19734.6373.1 ID=prot_Ecto-sp13_S_contig19734.6373.1|Name=mRNA_Ecto-sp13_S_contig19734.6373.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=406bp
RLSPPLSPPATSGSSFPPSRSTPAAFFSIPVAAASAVSGALFRASCWATH
AAASAMASFSTAETTTAAPPFPLSEAAVVGPAPAPGGGAFIPALLAQPRP
PPVAATSISSRMTLLSASTIPPVPPLAPGAAAPSTPPSVSTAAGGAGCCC
CSCWPGRVLSALESVGSVISATGAPTPAPAANSVASKSSSRSSLLAPKVE
LVDRPPPSFPRAPYGDTSADGAASAEAVSFGENEALLPETAAAAAGEPSA
SAADNREVTAGDGGSEHCFCAGAAAQAGVVPSPVIGEDVDSPTVRSGSAA
SPSGGVTSSASSSSTPEAFAPGGDAVVASPASSKPAMRSSTEDKFKSKLG
VVDRSPVLPPASTGDVESESPAMLSSTFPPENKLTPLIAVPGSPALLPSI
EPMIAV
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mRNA from alignment at Ecto-sp13_S_contig19734:4..1222+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig19734.6373.1 ID=mRNA_Ecto-sp13_S_contig19734.6373.1|Name=mRNA_Ecto-sp13_S_contig19734.6373.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1219bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19734:4..1222+ (Ectocarpus species13 EcNAP12_S_4_19m)
CGCTTGTCACCGCCGCTCTCTCCTCCAGCGACCTCGGGCTCTTCGTTTCC
GCCCTCGCGCTCGACGCCAGCGGCCTTCTTTTCCATTCCTGTGGCCGCCG
CCTCCGCCGTTTCAGGCGCCTTGTTCAGGGCCTCCTGCTGGGCAACACAC
GCCGCCGCGAGCGCCATGGCCTCCTTCTCCACGGCGGAAACCACCACCGC
CGCGCCGCCCTTCCCGTTGTCGGAAGCAGCAGTCGTAGGGCCCGCTCCTG
CGCCCGGGGGGGGTGCCTTCATCCCCGCCCTGCTAGCGCAGCCGAGACCG
CCACCGGTAGCGGCCACAAGCATCTCGTCCAGGATGACGCTGCTGTCAGC
ATCAACGATACCTCCGGTGCCGCCGCTAGCGCCGGGGGCGGCGGCGCCAT
CGACACCGCCGTCCGTGTCAACAGCAGCAGGCGGAGCAGGCTGCTGCTGC
TGCTCCTGCTGGCCGGGGAGGGTTTTGTCCGCCTTGGAAAGCGTCGGCAG
CGTCATCTCCGCCACGGGCGCTCCCACGCCGGCACCGGCGGCGAACTCCG
TCGCCAGTAAGTCATCGTCCCGGTCGTCGCTGCTCGCCCCGAAAGTCGAG
CTCGTAGACAGGCCGCCGCCTAGCTTTCCCCGCGCCCCATACGGCGACAC
CTCTGCAGACGGCGCCGCCTCCGCCGAGGCCGTGTCTTTCGGGGAAAACG
AGGCCCTCTTGCCGGAGACGGCGGCAGCGGCGGCGGGGGAACCGTCGGCA
TCTGCGGCCGATAATCGCGAAGTCACAGCGGGGGACGGCGGCTCTGAACA
TTGCTTCTGCGCTGGAGCGGCAGCGCAAGCGGGAGTGGTACCGTCGCCGG
TAATAGGCGAAGACGTCGATTCCCCAACGGTGAGATCGGGGTCAGCGGCA
TCCCCTTCCGGGGGGGTGACATCATCCGCATCATCGTCGTCCACACCAGA
GGCGTTCGCACCAGGCGGGGACGCCGTCGTAGCATCCCCGGCGAGCTCCA
AGCCCGCCATGCGCTCCTCCACGGAAGACAAGTTCAAGTCCAAGCTCGGC
GTCGTCGACAGGTCGCCCGTCTTACCCCCCGCGTCTACCGGAGATGTCGA
GTCAGAGTCGCCCGCCATGCTGTCGTCTACGTTCCCTCCTGAGAACAAGT
TGACGCCCCTCATTGCGGTCCCGGGATCGCCGGCACTACTGCCATCGATA
GAGCCCATGATAGCGGTGC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig19734:4..1222+

>mRNA_Ecto-sp13_S_contig19734.6373.1 ID=mRNA_Ecto-sp13_S_contig19734.6373.1|Name=mRNA_Ecto-sp13_S_contig19734.6373.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1218bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19734:4..1222+ (Ectocarpus species13 EcNAP12_S_4_19m)
CGCTTGTCACCGCCGCTCTCTCCTCCAGCGACCTCGGGCTCTTCGTTTCC
GCCCTCGCGCTCGACGCCAGCGGCCTTCTTTTCCATTCCTGTGGCCGCCG
CCTCCGCCGTTTCAGGCGCCTTGTTCAGGGCCTCCTGCTGGGCAACACAC
GCCGCCGCGAGCGCCATGGCCTCCTTCTCCACGGCGGAAACCACCACCGC
CGCGCCGCCCTTCCCGTTGTCGGAAGCAGCAGTCGTAGGGCCCGCTCCTG
CGCCCGGGGGGGGTGCCTTCATCCCCGCCCTGCTAGCGCAGCCGAGACCG
CCACCGGTAGCGGCCACAAGCATCTCGTCCAGGATGACGCTGCTGTCAGC
ATCAACGATACCTCCGGTGCCGCCGCTAGCGCCGGGGGCGGCGGCGCCAT
CGACACCGCCGTCCGTGTCAACAGCAGCAGGCGGAGCAGGCTGCTGCTGC
TGCTCCTGCTGGCCGGGGAGGGTTTTGTCCGCCTTGGAAAGCGTCGGCAG
CGTCATCTCCGCCACGGGCGCTCCCACGCCGGCACCGGCGGCGAACTCCG
TCGCCAGTAAGTCATCGTCCCGGTCGTCGCTGCTCGCCCCGAAAGTCGAG
CTCGTAGACAGGCCGCCGCCTAGCTTTCCCCGCGCCCCATACGGCGACAC
CTCTGCAGACGGCGCCGCCTCCGCCGAGGCCGTGTCTTTCGGGGAAAACG
AGGCCCTCTTGCCGGAGACGGCGGCAGCGGCGGCGGGGGAACCGTCGGCA
TCTGCGGCCGATAATCGCGAAGTCACAGCGGGGGACGGCGGCTCTGAACA
TTGCTTCTGCGCTGGAGCGGCAGCGCAAGCGGGAGTGGTACCGTCGCCGG
TAATAGGCGAAGACGTCGATTCCCCAACGGTGAGATCGGGGTCAGCGGCA
TCCCCTTCCGGGGGGGTGACATCATCCGCATCATCGTCGTCCACACCAGA
GGCGTTCGCACCAGGCGGGGACGCCGTCGTAGCATCCCCGGCGAGCTCCA
AGCCCGCCATGCGCTCCTCCACGGAAGACAAGTTCAAGTCCAAGCTCGGC
GTCGTCGACAGGTCGCCCGTCTTACCCCCCGCGTCTACCGGAGATGTCGA
GTCAGAGTCGCCCGCCATGCTGTCGTCTACGTTCCCTCCTGAGAACAAGT
TGACGCCCCTCATTGCGGTCCCGGGATCGCCGGCACTACTGCCATCGATA
GAGCCCATGATAGCGGTG
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