mRNA_Ecto-sp13_S_contig19732.6372.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig19732.6372.1
Unique NamemRNA_Ecto-sp13_S_contig19732.6372.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig19732.6372.1 vs. uniprot
Match: D7FMZ5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FMZ5_ECTSI)

HSP 1 Score: 415 bits (1066), Expect = 9.440e-141
Identity = 217/218 (99.54%), Postives = 218/218 (100.00%), Query Frame = 1
Query:    1 QMEMYTKENERLIKTLQLEARKEAAAKYVDPEKALEAKERGNEQFRAGQWALAISEYEEAVKRDPTNAAYRNNLAAALTKIGDFNAAKAACEKALELDSKYVKAWAKKGDIEFFMKEYHKALDSYKMGLTVEPNNSLCVDGVRKTTVKINEGSGKADSERAAHAMADPEIQMILTDPVVRQVLNDFKDNPKEAQKALGNADMRAKIDKLVAAGVVQVA 654
            QMEMYTKENERLIKTLQLEARKEAAAKYVDPEKALEAKERGNEQFRAGQWALAISEYEEAVKRDPTNAAYRNNLAAALTKIGDFNAAKAACEKALELDSKYVKAWAKKGDIEFFMKEYHKALDSYKMGLTVEPNNSLCVDGVRKTTVKINEGSGKADSERAAHAMADPEIQMILTDPVVRQVLNDFKDNPKEA+KALGNADMRAKIDKLVAAGVVQVA
Sbjct:  378 QMEMYTKENERLIKTLQLEARKEAAAKYVDPEKALEAKERGNEQFRAGQWALAISEYEEAVKRDPTNAAYRNNLAAALTKIGDFNAAKAACEKALELDSKYVKAWAKKGDIEFFMKEYHKALDSYKMGLTVEPNNSLCVDGVRKTTVKINEGSGKADSERAAHAMADPEIQMILTDPVVRQVLNDFKDNPKEARKALGNADMRAKIDKLVAAGVVQVA 595          
BLAST of mRNA_Ecto-sp13_S_contig19732.6372.1 vs. uniprot
Match: A0A835ZGH8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZGH8_9STRA)

HSP 1 Score: 277 bits (708), Expect = 6.570e-87
Identity = 150/219 (68.49%), Postives = 170/219 (77.63%), Query Frame = 1
Query:    1 QMEMYTKENERLIKTLQLEARKEAAAKYVDPEKALEAKERGNEQFRAGQWALAISEYEEAVKRDPTNAAYRNNLAAALTKIGDFNAAKAACEKALELDSKYVKAWAKKGDIEFFMKEYHKALDSYKMGLTVEPNNSLCVDGVRKTTVKINEGSGKADSERA--AHAMADPEIQMILTDPVVRQVLNDFKDNPKEAQKALGNADMRAKIDKLVAAGVVQV 651
            Q+E Y KE ERL+K  +LE RK  AA YVDPEKAL AKERGNE FRAG W  AI EYEEAVKRDP+NA YRNNLA+AL KI DFN AKAA EKALELD KYVKAWAKKGDIEF MKEYHKAL+S++ GL +E +NSLC  G++KT  KI       D ER   AHAMADPEIQ IL+DPVV+QVL D + +P E QKAL N  MRAKI+KL+AAG++QV
Sbjct:  376 QVEHYVKETERLLKNTELEWRKAQAAAYVDPEKALAAKERGNEHFRAGNWVDAIKEYEEAVKRDPSNAVYRNNLASALVKIMDFNGAKAAVEKALELDPKYVKAWAKKGDIEFVMKEYHKALESFQKGLDLENDNSLCKAGLQKTVAKIQSTGATPDEERERRAHAMADPEIQRILSDPVVQQVLQDAQQSPHELQKALANPGMRAKIEKLIAAGILQV 594          
BLAST of mRNA_Ecto-sp13_S_contig19732.6372.1 vs. uniprot
Match: A0A7S2V2W3_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V2W3_9STRA)

HSP 1 Score: 259 bits (663), Expect = 2.550e-85
Identity = 133/188 (70.74%), Postives = 156/188 (82.98%), Query Frame = 1
Query:   91 PEKALEAKERGNEQFRAGQWALAISEYEEAVKRDPTNAAYRNNLAAALTKIGDFNAAKAACEKALELDSKYVKAWAKKGDIEFFMKEYHKALDSYKMGLTVEPNNSLCVDGVRKTTVKINEG--SGKADSERAAHAMADPEIQMILTDPVVRQVLNDFKDNPKEAQKALGNADMRAKIDKLVAAGVVQ 648
            PEK +EAKE+GNE FRAG++A AI+EY EA KRDPTNAAY NNLAAAL+K+GDFN AK ACEKAL+LD  YVKAWAKKGDIEFFMKEYHKAL+SYK GL VE NN LC  G+++T  KINE   SG+ D ERA H MADPE+Q IL+DPV+R VL DF++NP EAQKAL +  +RAKI+KL+AAGV+Q
Sbjct:    1 PEKGVEAKEKGNEFFRAGKFAEAINEYREATKRDPTNAAYHNNLAAALSKLGDFNTAKEACEKALQLDPTYVKAWAKKGDIEFFMKEYHKALESYKKGLEVESNNPLCQQGLQRTAQKINEANMSGEVDMERAQHGMADPEVQAILSDPVIRNVLRDFQENPMEAQKALADPTVRAKIEKLMAAGVLQ 188          
BLAST of mRNA_Ecto-sp13_S_contig19732.6372.1 vs. uniprot
Match: W7TJK4_9STRA (Stress-induced protein sti1 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TJK4_9STRA)

HSP 1 Score: 271 bits (692), Expect = 9.150e-85
Identity = 136/217 (62.67%), Postives = 176/217 (81.11%), Query Frame = 1
Query:    1 QMEMYTKENERLIKTLQLEARKEAAAKYVDPEKALEAKERGNEQFRAGQWALAISEYEEAVKRDPTNAAYRNNLAAALTKIGDFNAAKAACEKALELDSKYVKAWAKKGDIEFFMKEYHKALDSYKMGLTVEPNNSLCVDGVRKTTVKINEGSGK-ADSERAAHAMADPEIQMILTDPVVRQVLNDFKDNPKEAQKALGNADMRAKIDKLVAAGVVQ 648
            QME + K  ERLIK+ ++E +K+    YVDP KA+EAK+RGNE FRAG+W  A+ EY EA++RDP+NAAY NNLAAAL+K+ DF+AAK ACEKA+ LD KYVKAWAKKGDIEFFMKEYH+AL+SYK GL +EPNNSLCV G++KT+ +I + S + AD ERAAH MADPE+Q IL DPV++QVL D ++NP+E ++AL +  + AKI+KL+ AGV++
Sbjct:  354 QMEHFDKTVERLIKSTEVERKKQEELAYVDPAKAVEAKDRGNEAFRAGKWPDAVKEYNEAIRRDPSNAAYHNNLAAALSKLMDFSAAKTACEKAIALDPKYVKAWAKKGDIEFFMKEYHRALESYKHGLEIEPNNSLCVQGLQKTSARIRDASSQEADMERAAHGMADPEVQAILGDPVIQQVLRDLQENPREGRQALSDPGVAAKIEKLINAGVLR 570          
BLAST of mRNA_Ecto-sp13_S_contig19732.6372.1 vs. uniprot
Match: A0A7S3HSG7_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HSG7_9STRA)

HSP 1 Score: 259 bits (662), Expect = 1.690e-80
Identity = 139/219 (63.47%), Postives = 169/219 (77.17%), Query Frame = 1
Query:    1 QMEMYTKENERLIKTLQLEARKEAAAKYVDPEKALEAKERGNEQFRAGQWALAISEYEEAVKRDPTNAAYRNNLAAALTKIGDFNAAKAACEKALELDSKYVKAWAKKGDIEFFMKEYHKALDSYKMGLTVEPNNSLCVDGVRKTTVKINEGSGKADSERAAHAMADPEIQMILTDPVVRQVLNDFKDNPKEAQKALGN-ADMRAKIDKLVAAGVVQVA 654
            QME + K  ER +K L+LE +K+    Y++PE  LEAKERGN  FR G +  AI EYEEAV+RDP N+ Y NNLAAA  K+G FN AK   E++LELD  YVKAWAKKGDIEFFMKEYHK++DSYK GL +EP+NSLC  G++KT  KI EG    + ER+AHAMADPEIQ IL+DP +RQVLNDF+DNPK AQ+A+ N  D+RAKI+KL+AAGV+QVA
Sbjct:  336 QMEAHDKAIERKVKNLELELKKQEKLSYINPELGLEAKERGNAFFREGDFPGAIREYEEAVRRDPNNSPYHNNLAAAYLKMGVFNDAKKEVERSLELDKTYVKAWAKKGDIEFFMKEYHKSMDSYKAGLALEPDNSLCKQGLQKTLAKIQEGG--ENKERSAHAMADPEIQRILSDPTIRQVLNDFQDNPKFAQQAMMNDKDIRAKIEKLIAAGVLQVA 552          
BLAST of mRNA_Ecto-sp13_S_contig19732.6372.1 vs. uniprot
Match: A0A812U018_SYMMI (HOP3 protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812U018_SYMMI)

HSP 1 Score: 252 bits (643), Expect = 3.260e-78
Identity = 132/218 (60.55%), Postives = 166/218 (76.15%), Query Frame = 1
Query:    1 QMEMYTKENERLIKTLQLEARKEAAAKYVDPEKALEAKERGNEQFRAGQWALAISEYEEAVKRDPTNAAYRNNLAAALTKIGDFNAAKAACEKALELDSKYVKAWAKKGDIEFFMKEYHKALDSYKMGLTVEPNNSLCVDGVRKTTVKINEG-SGKADSERAAHAMADPEIQMILTDPVVRQVLNDFKDNPKEAQKALGNADMRAKIDKLVAAGVVQV 651
            Q E + K  ER +K L+LE +++A   Y++P   +EAKERGN  FR   +  AI EYE+A+ RD TNAAYRNNLAAAL K+GDFN AK   EK+LELD++YVKAWAKKGDIEFFMKEYH+ALDSYK GL +EP+N+LC  G+ KT   IN   S + + ERAAHAMADPEIQ IL DP+VRQ L D ++NP+ AQ+AL +  +RAKIDKL+A+G++QV
Sbjct:  283 QTEHFDKAIERKVKNLELEYKQKAVKAYINPALGVEAKERGNTAFRENDFPTAIREYEDAIMRDSTNAAYRNNLAAALLKMGDFNGAKREVEKSLELDNRYVKAWAKKGDIEFFMKEYHRALDSYKAGLQIEPDNALCTRGLSKTMAHINTTQSEEVNKERAAHAMADPEIQFILQDPMVRQTLQDLQENPQSAQRALNDPVIRAKIDKLIASGILQV 500          
BLAST of mRNA_Ecto-sp13_S_contig19732.6372.1 vs. uniprot
Match: A0A7R9U847_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U847_9STRA)

HSP 1 Score: 247 bits (631), Expect = 7.360e-78
Identity = 134/215 (62.33%), Postives = 164/215 (76.28%), Query Frame = 1
Query:    1 QMEMYTKENERLIKTLQLEARKEAAAKYVDPEKALEAKERGNEQFRAGQWALAISEYEEAVKRDPTNAAYRNNLAAALTKIGDFNAAKAACEKALELDSKYVKAWAKKGDIEFFMKEYHKALDSYKMGLTVEPNNSLCVDGVRKTTVKINEGSGKADSERAAHAMADPEIQMILTDPVVRQVLNDFKDNPKEAQKALGNADMRAKIDKLVAAGVV 645
            Q E   K+ ER +K L+LE R+     YV+PE A EAK RGNE+FRAG +  AI+EYEEAVKRDP++A  RNNLAAAL K+GDFN A  + +KALELD KYVKAWAKKGDIEF+MKEYHKA++SY+ GL V+ +N LC DG++K    IN  SG  D ER AHAMADPEIQ +L DPVV QV+ DFK+NP  AQ+A+ N  M+AKI+KL+AAGV+
Sbjct:  165 QREHRDKKIEREMKMLELEKRERERKAYVNPELAQEAKSRGNEKFRAGDFGGAIAEYEEAVKRDPSDAPIRNNLAAALQKVGDFNGALNSVKKALELDEKYVKAWAKKGDIEFYMKEYHKAMESYQKGLAVDDSNQLCRDGLQKVVAAINTSSGP-DEERLAHAMADPEIQSLLRDPVVVQVIRDFKENPSAAQQAMQNPGMQAKINKLMAAGVL 378          
BLAST of mRNA_Ecto-sp13_S_contig19732.6372.1 vs. uniprot
Match: A0A7S4RC86_9STRA (Hypothetical protein n=5 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4RC86_9STRA)

HSP 1 Score: 247 bits (630), Expect = 2.030e-75
Identity = 130/222 (58.56%), Postives = 161/222 (72.52%), Query Frame = 1
Query:    1 QMEMYTKENERLIKTLQLEARKEAAAKYVDPEKALEAKERGNEQFRAGQWALAISEYEEAVKRDPTNAAYRNNLAAALTKIGDFNAAKAACEKALELDSKYVKAWAKKGDIEFFMKEYHKALDSYKMGLTVEPNNSLCVDGVRKTTVKINEGSG----KADSERAAHAMADPEIQMILTDPVVRQVLNDFKDNPKEAQKALGNADMRAKIDKLVAAGVVQVA 654
            Q+E Y K  ER++KT++LE RK A   Y D EKA EAK+RGN+ FRA +WA A+  YEEAVKR P NA  RNNLAAAL KI DFN AK   E+A+ +D KY KAWA+KGDIE  MKE HKALDSYK GL ++P+N+ C +G+RK T +IN G+     +   ERA H +ADPEIQ I+ DPVV+QVL DF +NP  A +A+ N  MRAKI+KL+AAGV+Q A
Sbjct:  362 QLECYDKATERMMKTMELERRKAAVLAYQDDEKAEEAKQRGNDHFRAKEWAKAVEAYEEAVKRAPKNAPIRNNLAAALCKIMDFNGAKMHIEEAVHIDPKYTKAWARKGDIEMVMKENHKALDSYKAGLAIDPDNAACKEGLRKCTAQINYGAATMTEEEKQERAQHGLADPEIQAIIQDPVVQQVLRDFNENPNAANQAMNNPSMRAKIEKLIAAGVLQTA 583          
BLAST of mRNA_Ecto-sp13_S_contig19732.6372.1 vs. uniprot
Match: A0A7S2BEE1_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BEE1_9STRA)

HSP 1 Score: 246 bits (629), Expect = 2.790e-75
Identity = 135/219 (61.64%), Postives = 161/219 (73.52%), Query Frame = 1
Query:    1 QMEMYTKENERLIKTLQLEARKEAAAKYVDPEKALEAKERGNEQFRAGQWALAISEYEEAVKRDPTNAAYRNNLAAALTKIGDFNAAKAACEKALELDSKYVKAWAKKGDIEFFMKEYHKALDSYKMGLTVEPNNSLCVDGVRKTTVKINE--GSGKADSERAAHAMADPEIQMILTDPVVRQVLNDFKDNPKEA-QKALGNADMRAKIDKLVAAGVVQ 648
            QME  TKE +RL+KT +L+ +K     YV+PE  LEAKERGNE FRA  W  AI EYE+A+KRDP NAAY NNLAAAL KI DF  A AACEKAL+LD KYVKA A+KGDIEF  KEYHKAL++Y+ GLT+EP+N  C DG++KT   +N   GSG+ D ERAAH MADPEIQ IL DPVV QV+ D     + A Q+A+ +  M AKI KL+AAGV+Q
Sbjct:  362 QMEYNTKEVDRLMKTTKLDKKKADKLAYVNPELGLEAKERGNEAFRAQDWPTAIKEYEDAIKRDPKNAAYNNNLAAALCKIMDFQGASAACEKALDLDPKYVKAIARKGDIEFLRKEYHKALETYQKGLTIEPDNKACKDGLQKTMRMVNSSTGSGEVDKERAAHGMADPEIQAILRDPVVNQVIQDLSGGDQAAGQRAMADPVMSAKIQKLIAAGVLQ 580          
BLAST of mRNA_Ecto-sp13_S_contig19732.6372.1 vs. uniprot
Match: A0A7R9ZH81_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9ZH81_9STRA)

HSP 1 Score: 236 bits (603), Expect = 1.590e-74
Identity = 129/222 (58.11%), Postives = 159/222 (71.62%), Query Frame = 1
Query:    1 QMEMYTKENERLIKTLQLEARKEAAAKYVDPEKALEAKERGNEQFRAGQWALAISEYEEAVKRDPTNAAYRNNLAAALTKIGDFNAAKAACEKALELDSKYVKAWAKKGDIEFFMKEYHKALDSYKMGLTVEPNNSLCVDGVRKTTVKINEGSG----KADSERAAHAMADPEIQMILTDPVVRQVLNDFKDNPKEAQKALGNADMRAKIDKLVAAGVVQVA 654
            Q+E Y K  +RL+KTL+LE +K+ A  Y D EKA EAK+RGN  FR  +WA A+ EYEEAVKR P NA  RNNL+AAL KI DFN AK   E+ALELD +YVKAWA+KGDIE  MKEYHKA+DSYK GL +E +N  C  G++K    IN+ +     +   ERA HAMADPEIQ IL DPVV+QVL DF +NP  A +A+ +  MR KI+KL+A+G+VQ A
Sbjct:   89 QLENYDKATDRLLKTLELEKKKKDALDYQDDEKAEEAKQRGNAHFRNKEWADAVKEYEEAVKRAPKNAPIRNNLSAALCKIMDFNGAKRQIEEALELDPRYVKAWARKGDIEVVMKEYHKAMDSYKAGLEIEKDNPTCKAGLQKVMGLINQSASTMTEEERKERAEHAMADPEIQAILADPVVQQVLRDFNENPNAANQAMRDPFMRGKIEKLIASGIVQTA 310          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig19732.6372.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FMZ5_ECTSI9.440e-14199.54Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835ZGH8_9STRA6.570e-8768.49Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2V2W3_9STRA2.550e-8570.74Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
W7TJK4_9STRA9.150e-8562.67Stress-induced protein sti1 n=2 Tax=Monodopsidacea... [more]
A0A7S3HSG7_9STRA1.690e-8063.47Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A812U018_SYMMI3.260e-7860.55HOP3 protein n=1 Tax=Symbiodinium microadriaticum ... [more]
A0A7R9U847_9STRA7.360e-7862.33Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A7S4RC86_9STRA2.030e-7558.56Hypothetical protein n=5 Tax=Ditylum brightwellii ... [more]
A0A7S2BEE1_9STRA2.790e-7561.64Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A7R9ZH81_9STRA1.590e-7458.11Hypothetical protein n=1 Tax=Pseudictyota dubia Ta... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig19732contigEcto-sp13_S_contig19732:601..2980 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score416.4
Seed ortholog evalue8.3e-114
Seed eggNOG ortholog2880.D7FMZ5
Preferred nameSTI1
Model size657
KEGG koko:K09553
KEGG Pathwayko05020,map05020
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0004857,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006457,GO:0006605,GO:0006626,GO:0006810,GO:0006839,GO:0006886,GO:0006996,GO:0007005,GO:0008104,GO:0008150,GO:0009987,GO:0015031,GO:0015833,GO:0016043,GO:0030234,GO:0030544,GO:0031072,GO:0032991,GO:0033036,GO:0033365,GO:0034613,GO:0042030,GO:0042886,GO:0043086,GO:0044092,GO:0044424,GO:0044464,GO:0045184,GO:0046907,GO:0050790,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0051879,GO:0060589,GO:0060590,GO:0065007,GO:0065009,GO:0070585,GO:0070727,GO:0071702,GO:0071705,GO:0071840,GO:0072594,GO:0072655,GO:0097159,GO:0098772,GO:1901363
Exons7
EggNOG free text desc.positive regulation of catalytic activity in other organism involved in symbiotic interaction
EggNOG OGsCOG0457@1,KOG0548@2759
Ec32 ortholog descriptionTetratricopeptide TPR1
Ec32 orthologEc-25_002880.1
Cds size654
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03110
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig19732.6372.1prot_Ecto-sp13_S_contig19732.6372.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig19732 601..2977 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462996.1047199-CDS-Ecto-sp13_S_contig19732:600..6721681462996.1047199-CDS-Ecto-sp13_S_contig19732:600..672Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19732 601..672 -
1681462996.117903-CDS-Ecto-sp13_S_contig19732:1078..12101681462996.117903-CDS-Ecto-sp13_S_contig19732:1078..1210Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19732 1079..1210 -
1681462996.1278498-CDS-Ecto-sp13_S_contig19732:1404..14761681462996.1278498-CDS-Ecto-sp13_S_contig19732:1404..1476Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19732 1405..1476 -
1681462996.1385527-CDS-Ecto-sp13_S_contig19732:1651..17531681462996.1385527-CDS-Ecto-sp13_S_contig19732:1651..1753Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19732 1652..1753 -
1681462996.1484818-CDS-Ecto-sp13_S_contig19732:1881..19831681462996.1484818-CDS-Ecto-sp13_S_contig19732:1881..1983Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19732 1882..1983 -
1681462996.1572402-CDS-Ecto-sp13_S_contig19732:2319..24211681462996.1572402-CDS-Ecto-sp13_S_contig19732:2319..2421Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19732 2320..2421 -
1681462996.167947-CDS-Ecto-sp13_S_contig19732:2905..29771681462996.167947-CDS-Ecto-sp13_S_contig19732:2905..2977Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19732 2906..2977 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462996.1834128-UTR-Ecto-sp13_S_contig19732:2977..29801681462996.1834128-UTR-Ecto-sp13_S_contig19732:2977..2980Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig19732 2978..2980 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig19732.6372.1

>prot_Ecto-sp13_S_contig19732.6372.1 ID=prot_Ecto-sp13_S_contig19732.6372.1|Name=mRNA_Ecto-sp13_S_contig19732.6372.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=218bp
MEMYTKENERLIKTLQLEARKEAAAKYVDPEKALEAKERGNEQFRAGQWA
LAISEYEEAVKRDPTNAAYRNNLAAALTKIGDFNAAKAACEKALELDSKY
VKAWAKKGDIEFFMKEYHKALDSYKMGLTVEPNNSLCVDGVRKTTVKINE
GSGKADSERAAHAMADPEIQMILTDPVVRQVLNDFKDNPKEAQKALGNAD
MRAKIDKLVAAGVVQVA*
back to top

mRNA from alignment at Ecto-sp13_S_contig19732:601..2980-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig19732.6372.1 ID=mRNA_Ecto-sp13_S_contig19732.6372.1|Name=mRNA_Ecto-sp13_S_contig19732.6372.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2380bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19732:601..2980- (Ectocarpus species13 EcNAP12_S_4_19m)
CAGATGGAAATGTACACCAAGGAGAACGAACGTCTCATCAAGACTCTCCA GCTTGAGGCTCGCAAAGAGGCCGCGGTGAGTTGCATGTACAGTCTTATCC TTGAAACACTCGTTCGATCGGCTTGTGGGTATGCTTATCATGGGATGGGT ACATGAGTTGGAAATCTGCAGATGGGAAATACACAAAAAAAAATTGCGCG CATTCACGCAAGTGCTTATAAAGGCCGTTTTGAACGGTGCCCAAGATTTT GGAATACTTCTTAGGTAGGGCAGGTGGCGAAGCGAGTTCGAAGGCAAACG ACTTGAGGGTTTCCAAGTTTGGAAGCGAACGCCGTTGGTCACGCGATCGC TTCCAAGTTATTGGAACGATGTTTTCGATGGCTCGCAAATTTTTGAAAGC CGGTTTTATTATGGAACGAAATGCCACCTTCAAACACGTCTAATCTGAGC CTGTGCATACCTTGCGAGTTCTGATATAGCTAGTGCCCGAAGGGTGTTGC ATGGGTGATGAAAGCGTTTTTTTAACCGTTGAAGGTCTGCATCTTCCCTC GGTCGTAAGGCCAAATACGTAGATCCTGAGAAAGCGTTGGAGGCAAAGGA GCGGGGCAACGAGCAGTTCCGGGCGGGCCAATGGGCTCTAGCCATCAGCG AGTATGAGGAGGTGAGTGGCTGCTGTACTTTTGAGCAGCTTGAACACAAA AAAATTTAGGTTTCAAAGGACACATTAGAGTTGGAAAGCATGTGACGGGT TGATATATACTTGGAAGTACACGAAGTGTATTTCAGTGGCATCGGCAGTC CCGAGGGCAATCCCTACACGGAATTTGAACGTTTTCAGTGGGCCCGGCTA AGAGTTTTGTGCAGGGCACATGTCCGTGAGCGTTTTTCGAGCAACGATAA TTTCTCGAAAATCTCACCATCTATGTTGGTCCCGAGAGGCGAACGTGTCG CGCAATTTTTTAACACTTTCCCTCCATACTCCCACCGCGCATTTCAGGCG GTCAAGCGTGACCCCACCAACGCAGCCTACCGCAACAACCTGGCGGCTGC GCTGACCAAGATTGGCGATTTCAACGCGGCGAAGGCTGCGTGCGAAAAGG TGCGCTTCGGGCTCGACGTACCTAGAACCAGCACCTTCAACATATCCTTG TCCATATTTGCATGTATACACCGCAAGGTTTATTTTGCTTGTTCTCTTAA GCCCGCCCACGCACCGGTGTGTCACAGGCCTTGGAGCTTGACTCGAAGTA CGTGAAGGCATGGGCTAAGAAGGGGGACATCGAGTTCTTCATGAAAGAGT ACCACAAGGCATTGGACAGCTACAAGATGGTGGGTGTGATGGTTGCGTTC CGTGGTCATGGACCCAGTCCAAAATCGAGTTGGAAAGTGTTGCAAGAAAC CAATCCATCGCTTTCTCTTCTTGCGTTGCGCCCGTCACCAACTTTGGAGC GAAAGTACGTCCAATTTGATGCTACACCAATTCTCTCTGTTTTCGTGGTT ACAGGGCTTGACGGTGGAGCCAAACAACTCACTGTGCGTGGATGGAGTAC GGAAGACGACCGTCAAAATCAATGAGGTGTGCATCGAGCACTGATGCGGT GGTTCTTGGCATCCTCTCTTTTTGAAGTGCGCTGTGAATGCTGCGAAGGT CATGGGCGGTTTTTTCGGGAGCTGTTGGCGGCCGACCTTGAACCTTTCTC TGTATCCTATGTTTCGTGTAAATCTTGTTGACATCTTTTTTTCATCTTTA ATTTGTTTTGCGCCCTGCAGGGATCCGGAAAAGCAGATTCCGAGAGAGCA GCGCACGCTATGGCTGACCCGGAGATCCAGATGATTCTCACGGATCCGGT GGTTCGGCAAGTCCTCAACGACTTCAAGGACAATCCGAAGGAGGCGCAAA AGGTATTGGACTACGATACGCCTTTGCTGCGTGATTGGATCGTCAAATTT GCACAACTTGGCCTCTATTATAGTGATCCAAAAACCTCACGCTTTTAGTT TTGTTGTTGACCCCATCAAAGCATATTTTGAGCATTTTCGTCGTTTTTCT GACGAAAAAGACCTCAGGCACATAAATATTTTGAACCTGTTGCTGCAGCG TACTTGTACTGTCCTCCATGTCATCCTCTGTGAGATGGAACAAAGGCCAA CTCGGATGTTGCACTTCGGATGTTACGCTCGCCCCACTCTCGAAGTTATA TAAACGGGGATTCTGCACACCCATGTGGTTCAATTCGCTACGAAGCATCC CTCACTCTCACGCCCACGCCTCTCTGTTTCGCCCCCACCATTGCAAATGC ACCCGAAGGCTCTCGGAAACGCCGACATGCGGGCCAAGATCGACAAGCTC GTGGCAGCAGGCGTTGTCCAAGTTGCTTGA
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig19732:601..2980-

>mRNA_Ecto-sp13_S_contig19732.6372.1 ID=mRNA_Ecto-sp13_S_contig19732.6372.1|Name=mRNA_Ecto-sp13_S_contig19732.6372.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=654bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19732:601..2980- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGAAATGTACACCAAGGAGAACGAACGTCTCATCAAGACTCTCCAGCT
TGAGGCTCGCAAAGAGGCCGCGGCCAAATACGTAGATCCTGAGAAAGCGT
TGGAGGCAAAGGAGCGGGGCAACGAGCAGTTCCGGGCGGGCCAATGGGCT
CTAGCCATCAGCGAGTATGAGGAGGCGGTCAAGCGTGACCCCACCAACGC
AGCCTACCGCAACAACCTGGCGGCTGCGCTGACCAAGATTGGCGATTTCA
ACGCGGCGAAGGCTGCGTGCGAAAAGGCCTTGGAGCTTGACTCGAAGTAC
GTGAAGGCATGGGCTAAGAAGGGGGACATCGAGTTCTTCATGAAAGAGTA
CCACAAGGCATTGGACAGCTACAAGATGGGCTTGACGGTGGAGCCAAACA
ACTCACTGTGCGTGGATGGAGTACGGAAGACGACCGTCAAAATCAATGAG
GGATCCGGAAAAGCAGATTCCGAGAGAGCAGCGCACGCTATGGCTGACCC
GGAGATCCAGATGATTCTCACGGATCCGGTGGTTCGGCAAGTCCTCAACG
ACTTCAAGGACAATCCGAAGGAGGCGCAAAAGGCTCTCGGAAACGCCGAC
ATGCGGGCCAAGATCGACAAGCTCGTGGCAGCAGGCGTTGTCCAAGTTGC
TTGA
back to top