mRNA_Ecto-sp13_S_contig19725.6366.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig19725.6366.1
Unique NamemRNA_Ecto-sp13_S_contig19725.6366.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig19725.6366.1 vs. uniprot
Match: A0A6H5J8D6_9PHAE (Protein kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J8D6_9PHAE)

HSP 1 Score: 231 bits (590), Expect = 3.910e-68
Identity = 118/121 (97.52%), Postives = 119/121 (98.35%), Query Frame = 1
Query:    1 VAVKEFVFAQAAISGGSLQRNELIEEIVGEAAIMSVLQHPRILHLYGCSLTSQAIWIVSELCPRGSLRQVLDDRGTPLTPRARLRVAVDVAEGMLYLHSREEPVIHRDLKSHNIFMMEDRE 363
            VAVKEFVFAQAAISGGS QRNELIEEIVGEAAIMSVLQHPRILHLYGCSLTSQAIWIVSELCPRGSLRQVLDDRGT LTPRARLRVAVDVAEGMLYLHSREEPVIHRDLKSHNIFMMEDR+
Sbjct: 1094 VAVKEFVFAQAAISGGSFQRNELIEEIVGEAAIMSVLQHPRILHLYGCSLTSQAIWIVSELCPRGSLRQVLDDRGTSLTPRARLRVAVDVAEGMLYLHSREEPVIHRDLKSHNIFMMEDRD 1214          
BLAST of mRNA_Ecto-sp13_S_contig19725.6366.1 vs. uniprot
Match: A0A835Z8B5_9STRA (Kinase-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8B5_9STRA)

HSP 1 Score: 196 bits (499), Expect = 1.020e-60
Identity = 96/118 (81.36%), Postives = 108/118 (91.53%), Query Frame = 1
Query:    1 VAVKEFVFAQAAISGGSLQRNELIEEIVGEAAIMSVLQHPRILHLYGCSLTSQAIWIVSELCPRGSLRQVLDDRGTPLTPRARLRVAVDVAEGMLYLHSREEPVIHRDLKSHNIFMME 354
            VAVKEFVFAQAA++GGSLQR ELIEEIVGEAA+MS L+HPRILHLYGCSLT+ AIWIVSELC RGSLRQVLDDR   LTP  RLR+AVDVAEGMLYLH+R++P+IHRDLKSHN+F+ E
Sbjct:   44 VAVKEFVFAQAAVAGGSLQRTELIEEIVGEAALMSFLRHPRILHLYGCSLTANAIWIVSELCSRGSLRQVLDDRSQQLTPVQRLRIAVDVAEGMLYLHTRDQPIIHRDLKSHNVFIQE 161          
BLAST of mRNA_Ecto-sp13_S_contig19725.6366.1 vs. uniprot
Match: A0A836CLH3_9STRA (Kinase-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CLH3_9STRA)

HSP 1 Score: 197 bits (502), Expect = 7.490e-60
Identity = 98/118 (83.05%), Postives = 108/118 (91.53%), Query Frame = 1
Query:    1 VAVKEFVFAQAAISGGSLQRNELIEEIVGEAAIMSVLQHPRILHLYGCSLTSQAIWIVSELCPRGSLRQVLDDRGTPLTPRARLRVAVDVAEGMLYLHSREEPVIHRDLKSHNIFMME 354
            VAVKEFVFAQAA++GGSLQRNELIEEIVGEAA+MS L+HPRILHLYGCSLTSQAIWIVSELC RGSLRQVLDDR   L    RLR+AVD+AEGMLYLHSRE+P+IHRDLKSHN+F+ E
Sbjct:   44 VAVKEFVFAQAAVTGGSLQRNELIEEIVGEAAVMSFLRHPRILHLYGCSLTSQAIWIVSELCSRGSLRQVLDDRSQHLPLVMRLRIAVDIAEGMLYLHSREQPIIHRDLKSHNVFIQE 161          
BLAST of mRNA_Ecto-sp13_S_contig19725.6366.1 vs. uniprot
Match: A0A7S3XPL6_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XPL6_HETAK)

HSP 1 Score: 185 bits (469), Expect = 5.260e-55
Identity = 88/118 (74.58%), Postives = 107/118 (90.68%), Query Frame = 1
Query:    1 VAVKEFVFAQAAISGGSLQRNELIEEIVGEAAIMSVLQHPRILHLYGCSLTSQAIWIVSELCPRGSLRQVLDDRGTPLTPRARLRVAVDVAEGMLYLHSREEPVIHRDLKSHNIFMME 354
            VAVKEFVFAQ A+ GG+LQRNEL++EIVGEAAIMS L+HP++LHLYGCS+TSQ++WIVSELC RGSLRQVL+DR T L+ R RL++A+DVAEGMLYLH+ E P++HRDLKSHNIF+ E
Sbjct:  143 VAVKEFVFAQEALRGGALQRNELVQEIVGEAAIMSFLRHPKVLHLYGCSITSQSLWIVSELCSRGSLRQVLNDRRTRLSTRRRLQLAIDVAEGMLYLHNHEAPIVHRDLKSHNIFIHE 260          
BLAST of mRNA_Ecto-sp13_S_contig19725.6366.1 vs. uniprot
Match: F0YIL7_AURAN (Protein kinase domain-containing protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YIL7_AURAN)

HSP 1 Score: 169 bits (429), Expect = 2.660e-50
Identity = 82/120 (68.33%), Postives = 99/120 (82.50%), Query Frame = 1
Query:    1 VAVKEFVFAQAAISGGSLQRNELIEEIVGEAAIMSVLQHPRILHLYGCSLTSQAIWIVSELCPRGSLRQVLDDRGTPLTPRARLRVAVDVAEGMLYLHSREEPVIHRDLKSHNIFMMEDR 360
            VAVKEFV AQAA +GG++ R ++IEEIVGEA IM+ L+HP+IL LYGCSLT+QAIWIVSELC  GSLR VLDD    L    RLR+A+DVAEGMLYLH+R+ P++HRDLKSHN+F+ E R
Sbjct:   26 VAVKEFVLAQAAFAGGAMHRRDIIEEIVGEAGIMAYLRHPKILQLYGCSLTAQAIWIVSELCSHGSLRSVLDDASLELGLETRLRMAIDVAEGMLYLHTRDHPIVHRDLKSHNLFVAEVR 145          
BLAST of mRNA_Ecto-sp13_S_contig19725.6366.1 vs. uniprot
Match: A0A7S2RPC6_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RPC6_9STRA)

HSP 1 Score: 175 bits (444), Expect = 5.380e-50
Identity = 85/118 (72.03%), Postives = 102/118 (86.44%), Query Frame = 1
Query:    1 VAVKEFVFAQAAISGGSLQRNELIEEIVGEAAIMSVLQHPRILHLYGCSLTSQAIWIVSELCPRGSLRQVLDDRGTPLTPRARLRVAVDVAEGMLYLHSREEPVIHRDLKSHNIFMME 354
            VAVKEFVFAQAA+SGGSL R ++IEEIVGEA IMS L+HPRIL L+GCSLT+QAIW+VSELC  GSLRQVLDD+   L    R+++A+DVAEGMLYLHSR+ P+IHRD+KSHN+F+ E
Sbjct:  241 VAVKEFVFAQAAVSGGSLHRRDIIEEIVGEAGIMSYLRHPRILQLFGCSLTAQAIWLVSELCSLGSLRQVLDDKHRELPISTRIQMAIDVAEGMLYLHSRDPPIIHRDIKSHNLFVQE 358          
BLAST of mRNA_Ecto-sp13_S_contig19725.6366.1 vs. uniprot
Match: A0A8J2X365_9STRA (Hypothetical protein n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2X365_9STRA)

HSP 1 Score: 170 bits (431), Expect = 7.750e-47
Identity = 81/120 (67.50%), Postives = 101/120 (84.17%), Query Frame = 1
Query:    1 VAVKEFVFAQAAISGGSLQRNELIEEIVGEAAIMSVLQHPRILHLYGCSLTSQAIWIVSELCPRGSLRQVLDDRGTPLTPRARLRVAVDVAEGMLYLHSREEPVIHRDLKSHNIFMMEDR 360
            VAVKEFV AQAA +GGSLQR +++E IVGEA IM+ L+HP++L LYGC+LT+QAIWIVSELC  GSLRQVLDD    L+   RLR+A+DVAEGML+LH+RE P++HRDLKSHN+F+ + R
Sbjct:  576 VAVKEFVLAQAAFAGGSLQRRDIVEAIVGEAGIMAYLRHPKVLQLYGCALTAQAIWIVSELCAHGSLRQVLDDDKVELSVETRLRMAIDVAEGMLFLHTRERPIVHRDLKSHNLFVADVR 695          
BLAST of mRNA_Ecto-sp13_S_contig19725.6366.1 vs. uniprot
Match: B8CC40_THAPS (Protein kinase domain-containing protein (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8CC40_THAPS)

HSP 1 Score: 159 bits (402), Expect = 4.100e-46
Identity = 76/118 (64.41%), Postives = 98/118 (83.05%), Query Frame = 1
Query:    1 VAVKEFVFAQAAISGGSLQRNELIEEIVGEAAIMSVLQHPRILHLYGCSLTSQAIWIVSELCPRGSLRQVLDDRGTPLTPRARLRVAVDVAEGMLYLHSREEPVIHRDLKSHNIFMME 354
            VAVKEFVFAQAA++G S Q+  ++EEI+GEA +M++L+HP +L L+GCSLT+QAIWIVSELC  GSLRQ+LDDR   L+   RL +A+ VAEGM YLH+++ P+IHRDLKSHNIF+ E
Sbjct:   31 VAVKEFVFAQAAVAGKSRQQQAIVEEIIGEAGMMAILRHPNVLQLFGCSLTAQAIWIVSELCSLGSLRQLLDDRERKLSMDVRLNLALQVAEGMAYLHTQDPPIIHRDLKSHNIFVHE 148          
BLAST of mRNA_Ecto-sp13_S_contig19725.6366.1 vs. uniprot
Match: A0A7R9YBX3_9STRA (Hypothetical protein (Fragment) n=2 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YBX3_9STRA)

HSP 1 Score: 165 bits (418), Expect = 4.140e-45
Identity = 79/118 (66.95%), Postives = 99/118 (83.90%), Query Frame = 1
Query:    1 VAVKEFVFAQAAISGGSLQRNELIEEIVGEAAIMSVLQHPRILHLYGCSLTSQAIWIVSELCPRGSLRQVLDDRGTPLTPRARLRVAVDVAEGMLYLHSREEPVIHRDLKSHNIFMME 354
            VAVKEFVFAQAA+ G S QR+EL++EIVGEA IM++L+HP+ILHLYGCSLT QAIWI SELC RG+LRQVL+D    L    +L++  DVAEGM+YLH+R+ P+IHRDLK+HN+F+ E
Sbjct:  707 VAVKEFVFAQAAVKGNSKQRDELLQEIVGEAGIMAMLRHPKILHLYGCSLTMQAIWITSELCSRGNLRQVLNDDDVHLDDETKLKMCCDVAEGMVYLHARDPPLIHRDLKTHNLFIHE 824          
BLAST of mRNA_Ecto-sp13_S_contig19725.6366.1 vs. uniprot
Match: A0A482SUV6_9ARCH (Protein kinase n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SUV6_9ARCH)

HSP 1 Score: 165 bits (418), Expect = 4.920e-45
Identity = 82/118 (69.49%), Postives = 97/118 (82.20%), Query Frame = 1
Query:    1 VAVKEFVFAQAAISGGSLQRNELIEEIVGEAAIMSVLQHPRILHLYGCSLTSQAIWIVSELCPRGSLRQVLDDRGTPLTPRARLRVAVDVAEGMLYLHSREEPVIHRDLKSHNIFMME 354
            VAVKEFVFAQAAI+GGSLQRN +IEEIVGEA +M+ L+HP+IL LYGCSLT QAIWIVSELC RGSL+ VL D+   L    RL + +D+A+GM YLH+R  P+IHRDLKSHNIF+ E
Sbjct:  435 VAVKEFVFAQAAIAGGSLQRNNIIEEIVGEAGVMACLRHPKILQLYGCSLTMQAIWIVSELCIRGSLKMVLMDQALDLPIVKRLSICMDIADGMQYLHNRSPPIIHRDLKSHNIFISE 552          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig19725.6366.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5J8D6_9PHAE3.910e-6897.52Protein kinase domain-containing protein n=1 Tax=E... [more]
A0A835Z8B5_9STRA1.020e-6081.36Kinase-like domain-containing protein n=1 Tax=Trib... [more]
A0A836CLH3_9STRA7.490e-6083.05Kinase-like domain-containing protein n=1 Tax=Trib... [more]
A0A7S3XPL6_HETAK5.260e-5574.58Hypothetical protein n=2 Tax=Heterosigma akashiwo ... [more]
F0YIL7_AURAN2.660e-5068.33Protein kinase domain-containing protein (Fragment... [more]
A0A7S2RPC6_9STRA5.380e-5072.03Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A8J2X365_9STRA7.750e-4767.50Hypothetical protein n=2 Tax=Pelagomonas calceolat... [more]
B8CC40_THAPS4.100e-4664.41Protein kinase domain-containing protein (Fragment... [more]
A0A7R9YBX3_9STRA4.140e-4566.95Hypothetical protein (Fragment) n=2 Tax=Pinguiococ... [more]
A0A482SUV6_9ARCH4.920e-4569.49Protein kinase n=1 Tax=archaeon TaxID=1906665 RepI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig19725contigEcto-sp13_S_contig19725:1511..2417 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score172.2
Seed ortholog evalue1.5e-40
Seed eggNOG ortholog44056.XP_009040159.1
Model size366
KEGG koko:K17535
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.protein kinase activity
EggNOG OGsCOG0515@1,KOG0192@2759
EC2.7.11.1
Cds size366
COG Functional cat.KLT
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01001
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462995.6007876-CDS-Ecto-sp13_S_contig19725:1510..16691681462995.6007876-CDS-Ecto-sp13_S_contig19725:1510..1669Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19725 1511..1669 +
1681462995.6174178-CDS-Ecto-sp13_S_contig19725:2210..24171681462995.6174178-CDS-Ecto-sp13_S_contig19725:2210..2417Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19725 2211..2417 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig19725.6366.1prot_Ecto-sp13_S_contig19725.6366.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig19725 1511..2417 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig19725.6366.1

>prot_Ecto-sp13_S_contig19725.6366.1 ID=prot_Ecto-sp13_S_contig19725.6366.1|Name=mRNA_Ecto-sp13_S_contig19725.6366.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=122bp
VAVKEFVFAQAAISGGSLQRNELIEEIVGEAAIMSVLQHPRILHLYGCSL
TSQAIWIVSELCPRGSLRQVLDDRGTPLTPRARLRVAVDVAEGMLYLHSR
EEPVIHRDLKSHNIFMMEDRE*
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mRNA from alignment at Ecto-sp13_S_contig19725:1511..2417+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig19725.6366.1 ID=mRNA_Ecto-sp13_S_contig19725.6366.1|Name=mRNA_Ecto-sp13_S_contig19725.6366.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=907bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19725:1511..2417+ (Ectocarpus species13 EcNAP12_S_4_19m)
GTGGCGGTGAAGGAGTTCGTGTTCGCTCAGGCGGCAATTTCGGGGGGGTC CCTTCAGCGTAACGAGCTGATCGAAGAGATCGTGGGGGAGGCCGCCATCA TGAGCGTCCTGCAGCACCCTCGGATCCTTCATCTGTATGGGTGCTCGCTG ACGTCTCAGGTGAGCTTTTGATTTCGCCATGGTGTCAAATTAGAAGCGGT TGTTGCTTTGGCGGGACAAAGGCGTAGGAATGCCCGATAGTTCGCCGGGT GTTTCTGCCGAAACGTATTGAGTCTTTCCCAGCACCCCCCTCGAGCTGTC AGCCCCTGTGAGTGCTTGCTAATTTCTCGAGCGAGTTGGATTTGATAGAG CGGTTGATCTTGTGAGACGGTGATCACTTTGTGAGGGGGGCGACGGGAGG TATGTGTTGGGGGGGGTCTTGTCCTCACGTCCTCCCCGGGTTTGTTGGGC TTCTGCTTGAGACAGCTTTTATTTGCCTGTGCCTGCTTTGAGATAAACGC ACGGACCGTCTTACTGTTTCCGTCAATACACGCACGTATGATTGTGATTC GATTTTTCGTGTGGATGGATTGTTTGGGATGGACCAACACCTTGTTAGAT GGGAAAAAGTAGCATCAGTAGCAGCACCACCAACATACGGTAACGAGTCG GGCTTGTTTAGCCAATCCCTTCGTTGGCTGTTGTTGCTGCTGCCTCGCAG GCCATCTGGATCGTGAGCGAGCTCTGCCCAAGAGGAAGCCTGAGGCAGGT GCTCGACGACAGGGGGACGCCGCTAACCCCTAGGGCTAGGCTGCGAGTGG CGGTGGACGTCGCCGAGGGGATGCTGTACTTGCACAGCCGAGAGGAGCCC GTGATCCACCGCGACCTGAAGAGCCACAACATCTTCATGATGGAGGACCG AGAGTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig19725:1511..2417+

>mRNA_Ecto-sp13_S_contig19725.6366.1 ID=mRNA_Ecto-sp13_S_contig19725.6366.1|Name=mRNA_Ecto-sp13_S_contig19725.6366.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=366bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19725:1511..2417+ (Ectocarpus species13 EcNAP12_S_4_19m)
GTGGCGGTGAAGGAGTTCGTGTTCGCTCAGGCGGCAATTTCGGGGGGGTC
CCTTCAGCGTAACGAGCTGATCGAAGAGATCGTGGGGGAGGCCGCCATCA
TGAGCGTCCTGCAGCACCCTCGGATCCTTCATCTGTATGGGTGCTCGCTG
ACGTCTCAGGCCATCTGGATCGTGAGCGAGCTCTGCCCAAGAGGAAGCCT
GAGGCAGGTGCTCGACGACAGGGGGACGCCGCTAACCCCTAGGGCTAGGC
TGCGAGTGGCGGTGGACGTCGCCGAGGGGATGCTGTACTTGCACAGCCGA
GAGGAGCCCGTGATCCACCGCGACCTGAAGAGCCACAACATCTTCATGAT
GGAGGACCGAGAGTGA
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