mRNA_Ecto-sp13_S_contig197.6355.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig197.6355.1
Unique NamemRNA_Ecto-sp13_S_contig197.6355.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig197.6355.1 vs. uniprot
Match: D7FRX3_ECTSI (Acyl-CoA dehydrogenase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FRX3_ECTSI)

HSP 1 Score: 356 bits (914), Expect = 5.490e-121
Identity = 172/177 (97.18%), Postives = 175/177 (98.87%), Query Frame = 1 
Query:    1 MTSRLALLERFVEDECIPAEPVFTREMAEIEARTGTRWEEVPAVLSRLKAKARSLGLWNLFMPKGHEGSANVPMKEYAQMSELMGRSSIAPEACNCSAPDTGNMEVFANYGSPEHKATWLKPLLEGKIRSAFLMTEPAVASSDATNIACDVRREGDMYVINGRKWWSSGAMDPRCKV 531
            M+SRLALLERFVEDECIPAEPVFT+EMAEIEARTGTRWEEVPAVLSRLKAKARSLGLWNLFMPKGHEGSANVPM+EYAQMSELMGRSSIAPEACNCSAPDTGNMEVFANYGSPEHKATWL PLLEGKIRSAFLMTEPAVASSDATNIACDV REGDMYVINGRKWWSSGAMDPRCKV
Sbjct:    1 MSSRLALLERFVEDECIPAEPVFTQEMAEIEARTGTRWEEVPAVLSRLKAKARSLGLWNLFMPKGHEGSANVPMQEYAQMSELMGRSSIAPEACNCSAPDTGNMEVFANYGSPEHKATWLTPLLEGKIRSAFLMTEPAVASSDATNIACDVHREGDMYVINGRKWWSSGAMDPRCKV 177
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BLAST of mRNA_Ecto-sp13_S_contig197.6355.1 vs. uniprot
Match: A0A836C9V4_9STRA (Acyl-CoA dehydrogenase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C9V4_9STRA)

HSP 1 Score: 254 bits (648), Expect = 7.730e-81
Identity = 121/174 (69.54%), Postives = 140/174 (80.46%), Query Frame = 1 
Query:   10 RLALLERFVEDECIPAEPVFTREMAEIEARTGTRWEEVPAVLSRLKAKARSLGLWNLFMPKGHEGSANVPMKEYAQMSELMGRSSIAPEACNCSAPDTGNMEVFANYGSPEHKATWLKPLLEGKIRSAFLMTEPAVASSDATNIACDVRREGDMYVINGRKWWSSGAMDPRCKV 531
            RL  LE FVEDECIPAE V      EI+ARTG+RW EVPAV+ +LK +AR+LGLWNLFMP GH G+  V + +YA +SE+MGRS+IAPEACNCSAPDTGNMEV A YGS   +A WL  LLEG+IRSAFLMTEP  ASSDATNIAC +RR GD YV+ GRKWWS+GAMDPRC++
Sbjct:   12 RLRTLEAFVEDECIPAERV-----KEIKARTGSRWSEVPAVMEQLKLRARALGLWNLFMPPGHPGTQGVSVSQYAALSEVMGRSTIAPEACNCSAPDTGNMEVLAQYGSAAQQAAWLPDLLEGRIRSAFLMTEPETASSDATNIACRIRRFGDKYVVTGRKWWSTGAMDPRCRL 180
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BLAST of mRNA_Ecto-sp13_S_contig197.6355.1 vs. uniprot
Match: A0A1Y1Y4D0_9FUNG (Acyl-CoA dehydrogenase domain protein n=1 Tax=Basidiobolus meristosporus CBS 931.73 TaxID=1314790 RepID=A0A1Y1Y4D0_9FUNG)

HSP 1 Score: 228 bits (580), Expect = 1.820e-70
Identity = 109/172 (63.37%), Postives = 128/172 (74.42%), Query Frame = 1 
Query:   19 LLERFVEDECIPAEPVFTREMAEIEARTGTRWEEVPAVLSRLKAKARSLGLWNLFMPKGHEGSANVPMKEYAQMSELMGRS-SIAPEACNCSAPDTGNMEVFANYGSPEHKATWLKPLLEGKIRSAFLMTEPAVASSDATNIACDVRREGDMYVINGRKWWSSGAMDPRCKV 531
            +L  FVE+ECIPAE ++  ++     +   RW+ +P V+  LK KAR LGLWNLF+PKGHE    +   EYA + E+MGRS  IAPEACNC APDTGNMEVF  YG+ E K  WLKPLLEGKIRSAF MTEPAVASSDATNI   ++R+GD Y+INGRKWW SGA DPRCKV
Sbjct:   16 VLTNFVENECIPAEQIYEEQIG----KGDDRWKVIPPVMEELKEKARKLGLWNLFIPKGHEEGPGLTNLEYAYLCEIMGRSVRIAPEACNCGAPDTGNMEVFLKYGNKEQKEKWLKPLLEGKIRSAFAMTEPAVASSDATNIETSIKRQGDDYIINGRKWWISGAGDPRCKV 183
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BLAST of mRNA_Ecto-sp13_S_contig197.6355.1 vs. uniprot
Match: A0A0L0HJ70_SPIPD (Uncharacterized protein n=2 Tax=Spizellomyces TaxID=4815 RepID=A0A0L0HJ70_SPIPD)

HSP 1 Score: 223 bits (568), Expect = 1.800e-68
Identity = 109/171 (63.74%), Postives = 129/171 (75.44%), Query Frame = 1 
Query:   19 LLERFVEDECIPAEPVFTREMAEIEARTGTRWEEVPAVLSRLKAKARSLGLWNLFMPKGHEGSANVPMKEYAQMSELMGRSSIAPEACNCSAPDTGNMEVFANYGSPEHKATWLKPLLEGKIRSAFLMTEPAVASSDATNIACDVRREGDMYVINGRKWWSSGAMDPRCKV 531
            +LE FVE ECIPAE V   ++ +I   +  RW  VP+V+ +LK +A+SLGLWNLF+P  +  S  +   EYA + E+MGRS IA EACNCSAPDTGNMEVFA YG+PE K  WL PL+EGKIRSAF MTEPAVASSDATNI  ++ REG+ YVINGRKWW SGA DPRC V
Sbjct:   17 VLEDFVEFECIPAEKVHHHQLGKI--GSADRWTVVPSVIEKLKTRAKSLGLWNLFLPSYYPESPGLTNLEYATLCEVMGRSHIAAEACNCSAPDTGNMEVFARYGTPEQKKKWLVPLMEGKIRSAFAMTEPAVASSDATNIQTEITREGNEYVINGRKWWISGAGDPRCAV 185
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BLAST of mRNA_Ecto-sp13_S_contig197.6355.1 vs. uniprot
Match: A0A086TC04_ACRC1 (Acyl-CoA dehydrogenase family member-like protein n=1 Tax=Acremonium chrysogenum (strain ATCC 11550 / CBS 779.69 / DSM 880 / IAM 14645 / JCM 23072 / IMI 49137) TaxID=857340 RepID=A0A086TC04_ACRC1)

HSP 1 Score: 222 bits (565), Expect = 8.670e-68
Identity = 109/174 (62.64%), Postives = 131/174 (75.29%), Query Frame = 1 
Query:   13 LALLERFVEDECIPAEPVFTREMAEIEARTGTRWEEVPAVLSRLKAKARSLGLWNLFMPKGH-EGSANVPMKEYAQMSELMGRSSIAPEACNCSAPDTGNMEVFANYGSPEHKATWLKPLLEGKIRSAFLMTEPAVASSDATNIACDVRREGDMYVINGRKWWSSGAMDPRCKV 531
            L ++ +FVE+ECIPA+PV   ++ E +AR    WE  PA++  LKAKAR LGLWN+F+PKGH + S      EYA M+E +GRS  A EACNCSAPDTGNMEV A YG+ + K  WLKPL+EG+IRSAFLMTEP VASSDATNI   +RREG+ YV+NG KWWSSGA DPRC V
Sbjct:   21 LDVVAKFVEEECIPADPVLEAQVGEGDAR----WEAHPAIIEDLKAKARKLGLWNMFLPKGHYKESPGWTNLEYALMAEWLGRSRSASEACNCSAPDTGNMEVLAKYGNDQQKEEWLKPLMEGRIRSAFLMTEPDVASSDATNIELSIRREGNEYVLNGSKWWSSGAGDPRCSV 190
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BLAST of mRNA_Ecto-sp13_S_contig197.6355.1 vs. uniprot
Match: A0A084FXW7_PSEDA (Uncharacterized protein n=1 Tax=Pseudallescheria apiosperma TaxID=563466 RepID=A0A084FXW7_PSEDA)

HSP 1 Score: 222 bits (565), Expect = 8.670e-68
Identity = 108/174 (62.07%), Postives = 131/174 (75.29%), Query Frame = 1 
Query:   13 LALLERFVEDECIPAEPVFTREMAEIEARTGTRWEEVPAVLSRLKAKARSLGLWNLFMPKGH-EGSANVPMKEYAQMSELMGRSSIAPEACNCSAPDTGNMEVFANYGSPEHKATWLKPLLEGKIRSAFLMTEPAVASSDATNIACDVRREGDMYVINGRKWWSSGAMDPRCKV 531
            L  + +FVE+ECIPA+PVF  ++ E +AR    WE  PA+L  LKA+ARSLGLWN+F+PKGH + S      EY  M+E +GRS IA EA NC+APDTGNMEV A YG+   K TWL PL++GKIRSAFLMTEP +ASSDATNI   +RREG+ YV+NG KWWSSGA DPRCK+
Sbjct:   21 LDTVAKFVEEECIPADPVFEAQIGEGDAR----WESYPAILENLKARARSLGLWNMFLPKGHYKESPGFTNLEYGLMAEWLGRSHIASEATNCAAPDTGNMEVLAKYGNEAQKRTWLAPLMDGKIRSAFLMTEPDIASSDATNIQLTMRREGNEYVLNGSKWWSSGAGDPRCKI 190
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BLAST of mRNA_Ecto-sp13_S_contig197.6355.1 vs. uniprot
Match: W7UAJ9_9STRA (Acyl-dehydrogenase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7UAJ9_9STRA)

HSP 1 Score: 220 bits (561), Expect = 2.240e-67
Identity = 107/172 (62.21%), Postives = 129/172 (75.00%), Query Frame = 1 
Query:   16 ALLERFVEDECIPAEPVFTREMAEIEARTGTRWEEVPAVLSRLKAKARSLGLWNLFMPKGHEGSANVPMKEYAQMSELMGRSSIAPEACNCSAPDTGNMEVFANYGSPEHKATWLKPLLEGKIRSAFLMTEPAVASSDATNIACDVRREGDMYVINGRKWWSSGAMDPRCKV 531
            A L  FV++EC+PAE V+ R+ AE+     +RW  +P ++  LK KAR LGLWNLFM +     + + M EYA +SE+MGRS +APEACNC+APDTGNMEV A YG+   +A WL PL+EG IRS FLMTEP VASSDATNIA   RREGD YV+NGRKWWSSGAMDPRC+V
Sbjct:   14 AKLTAFVDEECLPAEVVYERQHAEL----SSRWM-IPEIIETLKGKARKLGLWNLFMMERDVYHSGLNMVEYAVLSEVMGRSFLAPEACNCNAPDTGNMEVLAKYGNARQQAQWLNPLMEGSIRSTFLMTEPGVASSDATNIATSFRREGDEYVVNGRKWWSSGAMDPRCQV 180
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BLAST of mRNA_Ecto-sp13_S_contig197.6355.1 vs. uniprot
Match: A0A151GWY6_9HYPO (Benzylsuccinyl-CoA dehydrogenase n=1 Tax=Drechmeria coniospora TaxID=98403 RepID=A0A151GWY6_9HYPO)

HSP 1 Score: 220 bits (561), Expect = 3.440e-67
Identity = 105/172 (61.05%), Postives = 131/172 (76.16%), Query Frame = 1 
Query:   19 LLERFVEDECIPAEPVFTREMAEIEARTGTRWEEVPAVLSRLKAKARSLGLWNLFMPKGH-EGSANVPMKEYAQMSELMGRSSIAPEACNCSAPDTGNMEVFANYGSPEHKATWLKPLLEGKIRSAFLMTEPAVASSDATNIACDVRREGDMYVINGRKWWSSGAMDPRCKV 531
            ++ +FVE++CIPA+PV   ++ E       RWE  PA++  LKAKAR LGLWN+F+PKGH E S      EYA M+E +GRS +A EACNC+APDTGNMEV A YG+ E K  WL+PL++GKIRSAFLMTEP VASSDATNI   +RR+G+ YV++G+KWWSSGA DPRCKV
Sbjct:   23 VVAKFVEEDCIPADPVLEAQIGE----GHDRWERHPAIVEELKAKARKLGLWNMFLPKGHYEESPGWTNVEYAIMAEWLGRSRVASEACNCAAPDTGNMEVLAKYGNDEQKKRWLQPLMDGKIRSAFLMTEPGVASSDATNIELSIRRDGNEYVLSGQKWWSSGAGDPRCKV 190
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BLAST of mRNA_Ecto-sp13_S_contig197.6355.1 vs. uniprot
Match: I1RMF1_GIBZE (Uncharacterized protein n=73 Tax=Fusarium TaxID=5506 RepID=I1RMF1_GIBZE)

HSP 1 Score: 219 bits (559), Expect = 7.030e-67
Identity = 107/175 (61.14%), Postives = 131/175 (74.86%), Query Frame = 1 
Query:   10 RLALLERFVEDECIPAEPVFTREMAEIEARTGTRWEEVPAVLSRLKAKARSLGLWNLFMPKGH-EGSANVPMKEYAQMSELMGRSSIAPEACNCSAPDTGNMEVFANYGSPEHKATWLKPLLEGKIRSAFLMTEPAVASSDATNIACDVRREGDMYVINGRKWWSSGAMDPRCKV 531
            +L L+ +FVE+ECIPA+PV      E +AR    WE  P+++  LK KAR LGLWN+F+PKGH + S      EY  M+E +GRS +A EACNC+APDTGNMEV A YG+   KA WLKPL++GKIRSAFLMTEP VASSDATNI   +RREG+ YV+NG+KWWSSGA DPRCK+
Sbjct:   20 QLDLVAKFVEEECIPADPVVEALAGEGDAR----WEGHPSIIEDLKEKARKLGLWNMFLPKGHYKESPGWTNLEYGLMAEWLGRSHVASEACNCAAPDTGNMEVLAKYGNDAQKAQWLKPLMDGKIRSAFLMTEPQVASSDATNIELSIRREGNEYVLNGQKWWSSGAGDPRCKI 190
[Close]
BLAST of mRNA_Ecto-sp13_S_contig197.6355.1 vs. uniprot
Match: A0A7S9KPR9_EPIFF (Uncharacterized protein n=1 Tax=Epichloe festucae (strain Fl1) TaxID=877507 RepID=A0A7S9KPR9_EPIFF)

HSP 1 Score: 219 bits (557), Expect = 1.400e-66
Identity = 106/172 (61.63%), Postives = 129/172 (75.00%), Query Frame = 1 
Query:   19 LLERFVEDECIPAEPVFTREMAEIEARTGTRWEEVPAVLSRLKAKARSLGLWNLFMPKGH-EGSANVPMKEYAQMSELMGRSSIAPEACNCSAPDTGNMEVFANYGSPEHKATWLKPLLEGKIRSAFLMTEPAVASSDATNIACDVRREGDMYVINGRKWWSSGAMDPRCKV 531
            ++ +FVE+ECIPA+PV   ++ E +AR    WE  PA++  LK KAR LGLWNLF+PK H + S      EY  M+E +GRS  A EACNC+APDTGNMEV A YG+   K  WLKPL++GKIRSAFLMTEP VASSDATNI  D+RREG+ YV+NG+KWWSSGA DPRCK+
Sbjct:   23 VVAKFVEEECIPADPVLEAQVGEGDAR----WENHPAIIEELKEKARRLGLWNLFLPKDHYKESPGWTNLEYGIMAEWLGRSRSASEACNCAAPDTGNMEVLAKYGNDAQKQQWLKPLMDGKIRSAFLMTEPQVASSDATNIEMDIRREGNEYVLNGQKWWSSGAGDPRCKI 190
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig197.6355.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FRX3_ECTSI5.490e-12197.18Acyl-CoA dehydrogenase n=2 Tax=Ectocarpus TaxID=28... [more]
A0A836C9V4_9STRA7.730e-8169.54Acyl-CoA dehydrogenase n=1 Tax=Tribonema minus Tax... [more]
A0A1Y1Y4D0_9FUNG1.820e-7063.37Acyl-CoA dehydrogenase domain protein n=1 Tax=Basi... [more]
A0A0L0HJ70_SPIPD1.800e-6863.74Uncharacterized protein n=2 Tax=Spizellomyces TaxI... [more]
A0A086TC04_ACRC18.670e-6862.64Acyl-CoA dehydrogenase family member-like protein ... [more]
A0A084FXW7_PSEDA8.670e-6862.07Uncharacterized protein n=1 Tax=Pseudallescheria a... [more]
W7UAJ9_9STRA2.240e-6762.21Acyl-dehydrogenase n=2 Tax=Monodopsidaceae TaxID=4... [more]
A0A151GWY6_9HYPO3.440e-6761.05Benzylsuccinyl-CoA dehydrogenase n=1 Tax=Drechmeri... [more]
I1RMF1_GIBZE7.030e-6761.14Uncharacterized protein n=73 Tax=Fusarium TaxID=55... [more]
A0A7S9KPR9_EPIFF1.400e-6661.63Uncharacterized protein n=1 Tax=Epichloe festucae ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig197contigEcto-sp13_S_contig197:31894..33865 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score357.8
Seed ortholog evalue2.8e-96
Seed eggNOG ortholog2880.D7FRX3
Preferred nameACAD11
Model size531
KEGG rclassRC00005,RC00028,RC00052,RC00068,RC00076,RC00095,RC00148,RC00246,RC02748
KEGG koko:K00249,ko:K00695,ko:K11729,ko:K11730,ko:K15501,ko:K19360
KEGG ReactionR00806,R00924,R01175,R01279,R02661,R03172,R03777,R03857,R03990,R04095,R04432,R04751,R04754
KEGG Pathwayko00071,ko00280,ko00410,ko00500,ko00640,ko01100,ko01110,ko01130,ko01200,ko01212,ko03320,map00071,map00280,map00410,map00500,map00640,map01100,map01110,map01130,map01200,map01212,map03320
KEGG ModuleM00013,M00036,M00087
Hectar predicted targeting categoryother localisation
GOsGO:0000166,GO:0003674,GO:0003824,GO:0003995,GO:0004466,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005777,GO:0006082,GO:0006629,GO:0006631,GO:0006635,GO:0007275,GO:0008150,GO:0008152,GO:0009056,GO:0009062,GO:0009653,GO:0009888,GO:0009987,GO:0010015,GO:0010053,GO:0010054,GO:0016020,GO:0016042,GO:0016049,GO:0016054,GO:0016491,GO:0016627,GO:0017099,GO:0019395,GO:0019752,GO:0019866,GO:0021700,GO:0022622,GO:0030154,GO:0030258,GO:0031090,GO:0031966,GO:0031967,GO:0031975,GO:0032501,GO:0032502,GO:0032787,GO:0033539,GO:0034440,GO:0036094,GO:0040007,GO:0042579,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0044237,GO:0044238,GO:0044242,GO:0044248,GO:0044255,GO:0044281,GO:0044282,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0046395,GO:0048037,GO:0048364,GO:0048468,GO:0048469,GO:0048588,GO:0048589,GO:0048731,GO:0048764,GO:0048765,GO:0048767,GO:0048856,GO:0048869,GO:0050660,GO:0050662,GO:0055114,GO:0060560,GO:0070991,GO:0071695,GO:0071704,GO:0072329,GO:0080147,GO:0090558,GO:0090627,GO:0097159,GO:0099402,GO:1901265,GO:1901363,GO:1901575,GO:1905392
Exons5
EggNOG free text desc.very-long-chain-acyl-CoA dehydrogenase activity
EggNOG OGsCOG3173@1,KOG1469@2759
Ec32 ortholog descriptionacyl-CoA dehydrogenase
Ec32 orthologEc-03_003490.1
EC1.3.8.7,2.4.1.13
Cds size531
COG Functional cat.C
CAZyGT4
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01003,ko01009,ko03036,ko03400
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462994.8058424-CDS-Ecto-sp13_S_contig197:31893..320851681462994.8058424-CDS-Ecto-sp13_S_contig197:31893..32085Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig197 31894..32085 +
1681462994.8273351-CDS-Ecto-sp13_S_contig197:32788..328421681462994.8273351-CDS-Ecto-sp13_S_contig197:32788..32842Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig197 32789..32842 +
1681462994.83812-CDS-Ecto-sp13_S_contig197:33211..332801681462994.83812-CDS-Ecto-sp13_S_contig197:33211..33280Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig197 33212..33280 +
1681462994.848399-CDS-Ecto-sp13_S_contig197:33513..335741681462994.848399-CDS-Ecto-sp13_S_contig197:33513..33574Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig197 33514..33574 +
1681462994.8590875-CDS-Ecto-sp13_S_contig197:33710..338651681462994.8590875-CDS-Ecto-sp13_S_contig197:33710..33865Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig197 33711..33865 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig197.6355.1prot_Ecto-sp13_S_contig197.6355.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig197 31894..33865 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig197.6355.1

>prot_Ecto-sp13_S_contig197.6355.1 ID=prot_Ecto-sp13_S_contig197.6355.1|Name=mRNA_Ecto-sp13_S_contig197.6355.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=177bp
MTSRLALLERFVEDECIPAEPVFTREMAEIEARTGTRWEEVPAVLSRLKA
KARSLGLWNLFMPKGHEGSANVPMKEYAQMSELMGRSSIAPEACNCSAPD
TGNMEVFANYGSPEHKATWLKPLLEGKIRSAFLMTEPAVASSDATNIACD
VRREGDMYVINGRKWWSSGAMDPRCKV
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mRNA from alignment at Ecto-sp13_S_contig197:31894..33865+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig197.6355.1 ID=mRNA_Ecto-sp13_S_contig197.6355.1|Name=mRNA_Ecto-sp13_S_contig197.6355.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1972bp|location=Sequence derived from alignment at Ecto-sp13_S_contig197:31894..33865+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGACCTCGCGCTTGGCCCTGCTGGAGAGGTTCGTTGAAGATGAGTGCAT
TCCGGCTGAGCCCGTATTCACGCGGGAGATGGCAGAAATCGAGGCGAGGA
CGGGAACCCGGTGGGAGGAAGTCCCGGCGGTGTTGTCGAGACTCAAGGCA
AAGGCTCGATCTCTCGGCTTGTGGAACCTCTTCATGCCCAAGGTATTCTT
TGTGTGGGCCATCCATTGACCAAGCTTCTTCCCTGGCAGGGGTCGCCGTA
CGAGATTTGCCCCGATTGTCCCGCTCCACGGGGCGGCATGAATCTTCAGA
GGCAGTCAGACGGCTTCAACTCACCGCCTCATCAAGCAGTCTTCGACTTG
GCATTGATGCGTGTACATCTAGTCTAATACATCTAGCATACACGACAGGG
CATCGTTTAAGCTCGGTGGCTGTAGCAGCAAATGTTGACGTACAGCAGTA
GAGGGGAACATGCCATTTGAACGAAGTCAAGAATAAAGAAGCTCCTGTGT
AACCTCGGCTGATATGTCAAAACACATTCACCGAAAGAAAGGTGTGTTGT
AGCGCTATAATAACCAGATGGGACGAACACCCACACTCAACTGCATTCAA
CGCTTGTCGTTATCGTCTACCCAGCGGGTCACATATCACACCATCGTATA
GGTAACAAGAGCCCTCGTAATTACCAAAGCTATGTCCCAGCGCTGCAAGT
AGGTTGGTTGCCCTTTGTGGCCGAAATATGCGCGTTGTAGTGGCACACAT
ACTGGAATCCAGTGCAGATGACTACCGGTTTTGTGTGGTGGTTCGATTCA
TGACAATCTGAAGTGGTCCTGCGACGAAGCGCAGGCATAGACTATCCACC
TACATCCGATGTGAAGCGTTTTGCGTGCACGTTGTTGTCCTTCAGGGGCA
CGAAGGGAGCGCGAATGTGCCGATGAAAGAATACGCACAAATGAGCGAGG
TGAGGTGTGCCGGCGGCTTCATTCACCAGCGATGGGTCCGATCTGTTCGT
CGACTGCCACGCTTGATACCTGTAGGCCAATCTGGCACCTCGAGAAGAAC
GTTGACAGTCAGTAGCTCGTCACCAACCAAGCTGATGTGCAACACTCCTG
TACACTAAAAAATGCACAGAGGACCGTGCAGCACTGTAAAGTGCGATAGC
GACACAAACTGTTACAGGGAGCAAACGCAGCACCTGCGCTCTTGCCGTGA
TTCCGTTCAGTTCAAGATACCGATGTATCTTGCTGATATTTTCCGTGGTA
GGTCGTTTATCATGACCTTCCCCCCGACTACGTTGCCCGACCGATGCTTG
CCCCTGTCTCTAATCTAGCTGATGGGACGCTCGTCTATCGCTCCTGAGGC
GTGCAACTGCTCCGCACCCGACACCGGCAACATGGAGGTATGCCGCGGAG
ACTGATGGCGGCGACGCTGAGCATGCTTTCGAATTTGGAGACTTCAACGC
CTATTGATGCTTCCGCGTGCAGTCTCCCGCAATGGGCGTTTGGCACCGCC
GACTGATGAAAACTCCGAGGAACCACGATTCCGATTCGCCGCCGCGGGGG
TTCGGCCATGATTGTACGAACTAACACACGCAACAGTTACGCACCGCTCT
TCTCCCCACCCGACCTGAAGGTGTTCGCAAACTATGGCAGTCCCGAGCAC
AAGGCGACGTGGCTGAAACCACTGCTTGAAGGTGCGTGCACCGCTCATGG
CCCGCGTGGTGATGGGTACTTGTGGATATTTGTTGCCCGTGAGACACGCT
GCAGTCGTATCCTTCGCCAACGAAAACTTGTGACCCTTCGCCTGCCCCTA
ACCTTCCAACTCTCCAGGCAAGATTCGAAGTGCTTTCCTGATGACCGAGC
CTGCGGTTGCAAGCTCAGACGCCACGAACATTGCCTGCGATGTGCGCAGA
GAGGGCGATATGTACGTGATCAACGGCCGCAAGTGGTGGAGCTCTGGAGC
GATGGATCCACGATGCAAGGTG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig197:31894..33865+

>mRNA_Ecto-sp13_S_contig197.6355.1 ID=mRNA_Ecto-sp13_S_contig197.6355.1|Name=mRNA_Ecto-sp13_S_contig197.6355.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=531bp|location=Sequence derived from alignment at Ecto-sp13_S_contig197:31894..33865+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGACCTCGCGCTTGGCCCTGCTGGAGAGGTTCGTTGAAGATGAGTGCAT
TCCGGCTGAGCCCGTATTCACGCGGGAGATGGCAGAAATCGAGGCGAGGA
CGGGAACCCGGTGGGAGGAAGTCCCGGCGGTGTTGTCGAGACTCAAGGCA
AAGGCTCGATCTCTCGGCTTGTGGAACCTCTTCATGCCCAAGGGGCACGA
AGGGAGCGCGAATGTGCCGATGAAAGAATACGCACAAATGAGCGAGCTGA
TGGGACGCTCGTCTATCGCTCCTGAGGCGTGCAACTGCTCCGCACCCGAC
ACCGGCAACATGGAGGTGTTCGCAAACTATGGCAGTCCCGAGCACAAGGC
GACGTGGCTGAAACCACTGCTTGAAGGCAAGATTCGAAGTGCTTTCCTGA
TGACCGAGCCTGCGGTTGCAAGCTCAGACGCCACGAACATTGCCTGCGAT
GTGCGCAGAGAGGGCGATATGTACGTGATCAACGGCCGCAAGTGGTGGAG
CTCTGGAGCGATGGATCCACGATGCAAGGTG
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