mRNA_Ecto-sp13_S_contig1958.6309.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1958.6309.1
Unique NamemRNA_Ecto-sp13_S_contig1958.6309.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1958.6309.1 vs. uniprot
Match: D7FZI1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZI1_ECTSI)

HSP 1 Score: 115 bits (289), Expect = 7.630e-29
Identity = 55/109 (50.46%), Postives = 75/109 (68.81%), Query Frame = 3 
Query:    3 DSSAEER-FMAYVRVLFTEMAVVHSLLDELDPNFVVCHDWVYFGDIEQAQRVAEFIAPNEEVASMVSEALLGSATSRHKPNETLPFDAEDEISSRLQQKLDAFEYQYCG 326
            ++  EER F+ Y+RVLFT++AV+ S L E+ P F+VCHDW   GD EQA  +A FIAPN+E+A +V  +L+ +A  +      LPF+  D + SRLQ+KLDAFE  YCG
Sbjct:    6 ETVGEERLFLEYMRVLFTDIAVLQSFLSEIGPEFIVCHDWDRLGDKEQASTIAHFIAPNDEIAGLVESSLVQTARKKSSNTNPLPFEDADAVVSRLQRKLDAFEPLYCG 114
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BLAST of mRNA_Ecto-sp13_S_contig1958.6309.1 vs. uniprot
Match: A0A6H5JH94_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH94_9PHAE)

HSP 1 Score: 111 bits (278), Expect = 1.740e-24
Identity = 56/106 (52.83%), Postives = 75/106 (70.75%), Query Frame = 3 
Query:   15 EERFMAYVRVLFTEMAVVHSLLDELDPNFVVCHDWVYFGDIEQAQRVAEFIAPNEEVASMVSEALLGSA--TSRHKPNETLPFDAEDEISSRLQQKLDAFEYQYCG 326
            E  F+ Y+RVLFT++AV+HS L E+ P FVVCHDW   GD EQA  +A FI+PN+E+AS+V  +L+ +A  +SR  P   LPF+    +  RLQ+KLDAFE+ YCG
Sbjct:  305 ERLFLKYMRVLFTDIAVLHSFLGEIGPEFVVCHDWDRLGDKEQASTIASFISPNDEIASLVESSLVQTAKKSSRTDP---LPFEDAYAVVLRLQRKLDAFEHLYCG 407
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1958.6309.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FZI1_ECTSI7.630e-2950.46Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JH94_9PHAE1.740e-2452.83Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1958contigEcto-sp13_S_contig1958:8817..11532 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size884
Hectar predicted targeting categoryother localisation
Exons2
Cds size315
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462991.3676107-UTR-Ecto-sp13_S_contig1958:8816..88421681462991.3676107-UTR-Ecto-sp13_S_contig1958:8816..8842Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1958 8817..8842 +
1681462991.3941913-UTR-Ecto-sp13_S_contig1958:10989..115321681462991.3941913-UTR-Ecto-sp13_S_contig1958:10989..11532Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1958 10990..11532 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462991.3762653-CDS-Ecto-sp13_S_contig1958:8842..88471681462991.3762653-CDS-Ecto-sp13_S_contig1958:8842..8847Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1958 8843..8847 +
1681462991.3850253-CDS-Ecto-sp13_S_contig1958:10679..109891681462991.3850253-CDS-Ecto-sp13_S_contig1958:10679..10989Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1958 10680..10989 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1958.6309.1prot_Ecto-sp13_S_contig1958.6309.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1958 8843..10989 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1958.6309.1

>prot_Ecto-sp13_S_contig1958.6309.1 ID=prot_Ecto-sp13_S_contig1958.6309.1|Name=mRNA_Ecto-sp13_S_contig1958.6309.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=105bp
MAYVRVLFTEMAVVHSLLDELDPNFVVCHDWVYFGDIEQAQRVAEFIAPN
EEVASMVSEALLGSATSRHKPNETLPFDAEDEISSRLQQKLDAFEYQYCG
SNTT*
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mRNA from alignment at Ecto-sp13_S_contig1958:8817..11532+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1958.6309.1 ID=mRNA_Ecto-sp13_S_contig1958.6309.1|Name=mRNA_Ecto-sp13_S_contig1958.6309.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2716bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1958:8817..11532+ (Ectocarpus species13 EcNAP12_S_4_19m)
CGGACTCATCGGCGGAAGAGCGGTTCATGGCGTGAGTTCGCACTGGTCGT
GCGAGGTTGTTTATGTAGCCGAAACCACGCCACCCTAACTAGCAGCAGGT
CGATAGTTGTTGGGGTACGTGTCTTCACATTTTAAACCGTCAAGGGCTTG
GTACCTTTTACCTTCCGCACGGCTGCAACTGGCGCGTGCGTGTTTGGTGG
TGTACAGCAAACTACCCATTTTCGAGTGCATTGTTTTTTTCTTCGAACTG
CATAATATTGTACGCTGTATGCTCCACTTGATGTAGCTAGCAGTGAACCC
AAATGATCTTGTTGCTTTCATGGGTTTGGTCGTATATTGACCGAAATTTT
GATATTGTTGGAATGTTTCCCGCGGCGGCGAATAACACATTTCAGAGGAG
CATTGCCAGTACAGCATAGTGCCCAAGCTTTGTTATAGTGGCGCGCATTG
GCGAGAGGATGTTGGTACACACAGTTAGGGAATATGTATCGTGCCATTAT
CTACTTGCCTATTGTGTGTCGAATCCCTGCTCAACCTCTGCTACAGCAGT
ACGTACGATGGCATTTTTCTGGTCAGCCGGTTAGCGCGGTCGATGGTAGC
AATGAAACAACCGACACGGTGCTGCAGTTGTAGGGGATCCGATGCTCTCG
CCTGCTGCGAAATCACTAATACATATAGACAATCGAACCTGAAAGTTCGC
CCACATGCCGTTTGTCCAATGACTGCTCCCGGAACAATAAAAGATCCAAT
GCAAACCAATCCAAACCAAACTAAACCAAACAACTAGCCACTCACACATT
GTTTTTAGACTATCGTTCACACAACTTCATGTCGTCTCTCCTGTCTCTCT
CTTACCAAATGCACGTGCGTGCGTAGCCATCGAAACGGAAGGTGAACTTA
TTGTACAACAGACAGAACGTTGAGTACCCTCGATTGCTTGTTAGACACAA
TGTGTCGTCCCGTCGATTCCTGTGTTCCTGTTAAACGCACGGGTTCAATC
ACGCGCATCCGCGATGACAAAGGTGGATACATGTCGCAACTGATTGATGG
CAGAGAGCATAGACGCGCAGCACACGTCGGCCGTTGTCGCAGACCTACTC
GACCTCTATATCACTTTATGGCGCCCTCTCCTACTTGGGGTGGGAGGGGG
GCGATGCTCTACCCTAGTATGTGCAGGAACCACGAGGCGGCTTTACACAA
AAATGCGTTTCATGCAAGTTCGGGCTTGTTTTCGATGATATTACCTTTGA
ACTATTCGACAACATCTTTGACACGTGCCTCACTCGAGGGCTTTTTCACG
ACCCGATTGAGCCAAGAACCCTTTCTTTGATAATAAGGAGCCATCGACAG
CAGCGCCACCCCACGTCAAGTCCTTCAGGTCCAGCTCTTTTCAAAAAAAG
GGAGGAGAGAGTGCAGGAGAGAGTGCGGGAGAGAGAAAAGAAACAAAGTA
TTACTATTCTACATAGTGAAAACAGACATATGTCTTATAGTCCGAGCCCA
TTAACTGGCAAGCGGGAATCGACCGGTTCTTCTGGTACTCGTTTATACGA
GACTCATCATTTAGAACGGTTTGAATACTTGCCGGCACGCGAGCGTTATG
TATCTGCCCATTCAAATTAAACACTGCCTTCTCGGGCAATGCACATCACG
AAGTCTTGCGTCGCCCGCGGGAGGCTTGACACCCACCTCCCGAAGGGAGA
CCATGTAAACCTTGCGCAGCGGGGCAGTCGAACGCTGAAACACTGACAAC
ACTGTGCACCAAGATTTCCCCCCGATGGTGACAATCACGCTCCCGCTATC
TGCTCATCTTAGCCTTAGAAGCGGCAAGCCAGTGCTCACCGATATATTTC
GCCCAATGTCCAGGTATGTACGGGTGTTGTTCACCGAAATGGCGGTTGTC
CACTCCCTCCTCGATGAGCTCGACCCAAATTTCGTGGTATGTCACGACTG
GGTCTACTTTGGGGACATCGAACAGGCGCAGAGAGTTGCAGAGTTCATCG
CTCCGAACGAGGAGGTGGCGTCAATGGTCAGCGAGGCGCTACTGGGATCT
GCAACATCTCGTCACAAACCTAACGAGACACTGCCTTTTGATGCCGAAGA
CGAAATCTCATCACGCCTCCAGCAGAAGCTAGACGCTTTCGAATATCAAT
ACTGCGGCAGCAACACTACGTAGGTCGAGGCCCGAGGCAACGTTTGTTGT
AGTTTTAGTTGATCGTCCGGGATACATACGGGATTGTGTCGGACTTAAGA
CGCCGTTCCGATCATCCTACTACTTGTACACGAACAGACATGGTTTTATA
TCCGTCTGCAGGTGACAGGACGTATGCCGCTCACAGCCATCCATTTTACC
CGGTCTGAACAGGGTGTCACGACGTGAGTGGAAAGTAGAGCGACGCTAGG
CTCATGGAAACATTGAGTGCTCGAGACCAAAGAATTCCAGGGTGACACTT
GACGATTGACCATCGAGACTACGAGTGAAGGCATGTGAGCCGGGTGCGTT
TATTTGGCGGTAGGGTGCGGCTTTGGATCGCACCGCAGAGCACCGTTCCG
GATTATCAAGCAGGTGAGGACGATTGCCCCCGGCCCCTATGGGGCGGGCG
GCAAGAATGAGTTAGATGGCTATTGGTCTCCGAGAGGCGGAGCAAGCAGA
AACATTGACAACGTTCCTGCCAAAAATACCAGGGTTCACGATGTGAGGGC
CCCACGACGTCTGGTA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1958:8817..11532+

>mRNA_Ecto-sp13_S_contig1958.6309.1 ID=mRNA_Ecto-sp13_S_contig1958.6309.1|Name=mRNA_Ecto-sp13_S_contig1958.6309.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=315bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1958:8817..11532+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCGTATGTACGGGTGTTGTTCACCGAAATGGCGGTTGTCCACTCCCT
CCTCGATGAGCTCGACCCAAATTTCGTGGTATGTCACGACTGGGTCTACT
TTGGGGACATCGAACAGGCGCAGAGAGTTGCAGAGTTCATCGCTCCGAAC
GAGGAGGTGGCGTCAATGGTCAGCGAGGCGCTACTGGGATCTGCAACATC
TCGTCACAAACCTAACGAGACACTGCCTTTTGATGCCGAAGACGAAATCT
CATCACGCCTCCAGCAGAAGCTAGACGCTTTCGAATATCAATACTGCGGC
AGCAACACTACGTAG
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