mRNA_Ecto-sp13_S_contig1958.6308.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1958.6308.1
Unique NamemRNA_Ecto-sp13_S_contig1958.6308.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1958.6308.1 vs. uniprot
Match: D7G1E6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1E6_ECTSI)

HSP 1 Score: 138 bits (347), Expect = 1.330e-39
Identity = 68/82 (82.93%), Postives = 72/82 (87.80%), Query Frame = 1 
Query:  124 MHKAHPDLVRFDAELASFWKFFLIPTTMRKSSTAFTASWQQGRDQMRDLAQRAHALPAPGTVQLVTGGISYPSGNGPQKVQR 369
            M KAHPDLVRFD +L +FWKFF I TTMR SSTAFTASWQQGRDQMRDLAQRA  LP PGTVQL+TGGISYP GNGPQKVQ+
Sbjct:    1 MFKAHPDLVRFDEKLPNFWKFF-ISTTMRTSSTAFTASWQQGRDQMRDLAQRAQTLPTPGTVQLITGGISYPCGNGPQKVQQ 81
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1958.6308.1 vs. uniprot
Match: D7FMV4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMV4_ECTSI)

HSP 1 Score: 54.7 bits (130), Expect = 3.390e-6
Identity = 43/121 (35.54%), Postives = 61/121 (50.41%), Query Frame = 1 
Query:   25 VVNKAVVSHNMRLVFQLGLEGAGHHYIIGAIEDMHKAHPDLVRFDAELASFWKFFLIPTTMRKSSTAFTASWQQGRDQMRDLAQRAHALPAPGTVQLV---------TGGISYPSGNGPQK 360
            VV K  VS  MR+VF +GLEG GHHY+   +ED+ K   D VR   +L    K      ++ KS  A+  + ++ R++M  LA       A G   +V         TG +SYP+ NG +K
Sbjct:   98 VVEKKAVSSRMRVVFLVGLEGTGHHYMADVLEDVCKK--DKVRCP-KLCVMAKVLYPELSLPKSRNAYWDARKRLREEMEKLAAFPEESLAEGESTVVSFGACRFQGTGMMSYPNFNGDEK 215
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1958.6308.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G1E6_ECTSI1.330e-3982.93Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FMV4_ECTSI3.390e-635.54Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1958contigEcto-sp13_S_contig1958:7563..8207 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size372
Hectar predicted targeting categoryother localisation
Exons2
Cds size369
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462991.3300169-CDS-Ecto-sp13_S_contig1958:7562..76711681462991.3300169-CDS-Ecto-sp13_S_contig1958:7562..7671Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1958 7563..7671 +
1681462991.341274-CDS-Ecto-sp13_S_contig1958:7946..82061681462991.341274-CDS-Ecto-sp13_S_contig1958:7946..8206Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1958 7947..8206 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1958.6308.1prot_Ecto-sp13_S_contig1958.6308.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1958 7563..8206 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1958.6308.1

>prot_Ecto-sp13_S_contig1958.6308.1 ID=prot_Ecto-sp13_S_contig1958.6308.1|Name=mRNA_Ecto-sp13_S_contig1958.6308.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=123bp
EDRPPPGAVVNKAVVSHNMRLVFQLGLEGAGHHYIIGAIEDMHKAHPDLV
RFDAELASFWKFFLIPTTMRKSSTAFTASWQQGRDQMRDLAQRAHALPAP
GTVQLVTGGISYPSGNGPQKVQR
back to top

mRNA from alignment at Ecto-sp13_S_contig1958:7563..8207+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1958.6308.1 ID=mRNA_Ecto-sp13_S_contig1958.6308.1|Name=mRNA_Ecto-sp13_S_contig1958.6308.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=645bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1958:7563..8207+ (Ectocarpus species13 EcNAP12_S_4_19m)
GAAGACCGTCCACCACCTGGTGCGGTAGTCAACAAGGCCGTAGTTAGTCA
CAACATGCGCCTAGTTTTCCAGCTGGGGTTAGAGGGAGCAGGACATCACT
ACATAATAGGTACGTGACCGAGGCGGATTTCGTTCAGCAAACACCTTCCC
TTGTCCACCTTTTACCGCGTCGCTCTCGCAATTTTCAGGAGTCGGACCGG
CACTTTCCTCAGATACTCCGAACCGTAGAATGTGGGTTGATTCTGATCCT
TCCGACACGGGTTACTCATGGTGTATCACGTCGCACCCCAGAAGCCGAAT
TTTGTTTCGTACATCTCTCCTCACCATTGCATGAAAACCTTAACACATTG
ACCGGTGTGGCGAACACCGCGACTCATGCTTCAGGAGCAATTGAAGACAT
GCATAAGGCACACCCAGACCTGGTTCGTTTCGACGCCGAGTTGGCCAGCT
TTTGGAAGTTCTTCCTCATCCCTACTACCATGAGAAAAAGCTCAACGGCA
TTCACAGCATCCTGGCAGCAAGGCCGGGACCAGATGAGAGATTTAGCGCA
GCGTGCCCACGCACTGCCGGCTCCAGGAACGGTTCAGCTTGTCACCGGAG
GAATTTCATACCCTTCTGGCAATGGCCCTCAAAAGGTTCAACGGT
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1958:7563..8207+

>mRNA_Ecto-sp13_S_contig1958.6308.1 ID=mRNA_Ecto-sp13_S_contig1958.6308.1|Name=mRNA_Ecto-sp13_S_contig1958.6308.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=369bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1958:7563..8207+ (Ectocarpus species13 EcNAP12_S_4_19m)
GAAGACCGTCCACCACCTGGTGCGGTAGTCAACAAGGCCGTAGTTAGTCA
CAACATGCGCCTAGTTTTCCAGCTGGGGTTAGAGGGAGCAGGACATCACT
ACATAATAGGAGCAATTGAAGACATGCATAAGGCACACCCAGACCTGGTT
CGTTTCGACGCCGAGTTGGCCAGCTTTTGGAAGTTCTTCCTCATCCCTAC
TACCATGAGAAAAAGCTCAACGGCATTCACAGCATCCTGGCAGCAAGGCC
GGGACCAGATGAGAGATTTAGCGCAGCGTGCCCACGCACTGCCGGCTCCA
GGAACGGTTCAGCTTGTCACCGGAGGAATTTCATACCCTTCTGGCAATGG
CCCTCAAAAGGTTCAACGG
back to top