mRNA_Ecto-sp13_S_contig19559.6300.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig19559.6300.1
Unique NamemRNA_Ecto-sp13_S_contig19559.6300.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig19559.6300.1 vs. uniprot
Match: D7G4B8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4B8_ECTSI)

HSP 1 Score: 72.8 bits (177), Expect = 2.620e-16
Identity = 39/39 (100.00%), Postives = 39/39 (100.00%), Query Frame = 1 
Query:    1 MSTISKAEGQRKLSQILSSKRKEDPVGLLRAQRNGTLNE 117
            MSTISKAEGQRKLSQILSSKRKEDPVGLLRAQRNGTLNE
Sbjct:    1 MSTISKAEGQRKLSQILSSKRKEDPVGLLRAQRNGTLNE 39
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BLAST of mRNA_Ecto-sp13_S_contig19559.6300.1 vs. uniprot
Match: A0A6H5KRQ3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRQ3_9PHAE)

HSP 1 Score: 72.8 bits (177), Expect = 4.040e-14
Identity = 39/39 (100.00%), Postives = 39/39 (100.00%), Query Frame = 1 
Query:    1 MSTISKAEGQRKLSQILSSKRKEDPVGLLRAQRNGTLNE 117
            MSTISKAEGQRKLSQILSSKRKEDPVGLLRAQRNGTLNE
Sbjct:    1 MSTISKAEGQRKLSQILSSKRKEDPVGLLRAQRNGTLNE 39
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig19559.6300.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G4B8_ECTSI2.620e-16100.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KRQ3_9PHAE4.040e-14100.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig19559contigEcto-sp13_S_contig19559:1257..1869 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size117
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-02_002100.1
Cds size117
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462990.7269683-CDS-Ecto-sp13_S_contig19559:1256..13041681462990.7269683-CDS-Ecto-sp13_S_contig19559:1256..1304Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19559 1257..1304 -
1681462990.7382061-CDS-Ecto-sp13_S_contig19559:1800..18691681462990.7382061-CDS-Ecto-sp13_S_contig19559:1800..1869Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19559 1801..1869 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig19559.6300.1prot_Ecto-sp13_S_contig19559.6300.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig19559 1257..1869 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig19559.6300.1

>prot_Ecto-sp13_S_contig19559.6300.1 ID=prot_Ecto-sp13_S_contig19559.6300.1|Name=mRNA_Ecto-sp13_S_contig19559.6300.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=39bp
MSTISKAEGQRKLSQILSSKRKEDPVGLLRAQRNGTLNE
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mRNA from alignment at Ecto-sp13_S_contig19559:1257..1869-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig19559.6300.1 ID=mRNA_Ecto-sp13_S_contig19559.6300.1|Name=mRNA_Ecto-sp13_S_contig19559.6300.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=613bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19559:1257..1869- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAGCACCATCAGCAAAGCGGAAGGACAGAGGAAACTCAGCCAAATCCT
AAGCTCGAAGCGCAAAGAGGTATGCACATCATTGAAGAGAGGGTGGTTGT
GTCAAAGTGTTCCGTGTTGTCTTGCTGTGCTCCGCAGGTTTTATCTTCCT
ACACACCTGTGTGTTCTTTGAGCCGATTTCTGGGTTTTTTTTAACAACAC
TGCTGTCTGCCGAGCCGTGTGTACCTCGCCTCGCTTGTCCAGACCCCTAA
CGCTCACCGGGAAAAACTCTTGTTCGTTAGCCGTGTGCGGGGGTCGTGCG
CGCTTGAACCACAAACGATTCAAACGAACGAGTGCGTGCTGGTTGCACAC
AAGAACTTTACGCCCGGACCACGCTCCCTTATCTTTGTGCGTCGTATTTT
TGGCTGTTCGGCCGTGAATCCCAGCTTGCCGATGTCACTTTTGGAACAAT
CAACACGCGATTGAACCCTACCCTTGCTCCCGTCTCCTCTCGCGCGCGCT
CGCCTGCGTACCTTCCTTTCGCTTCTGTATCGGCCGCACCATCGTCCACT
GGCTGACCGAACCAGGATCCCGTTGGCCTGCTACGCGCTCAGCGAAACGG
AACGCTAAACGAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig19559:1257..1869-

>mRNA_Ecto-sp13_S_contig19559.6300.1 ID=mRNA_Ecto-sp13_S_contig19559.6300.1|Name=mRNA_Ecto-sp13_S_contig19559.6300.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=117bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19559:1257..1869- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAGCACCATCAGCAAAGCGGAAGGACAGAGGAAACTCAGCCAAATCCT
AAGCTCGAAGCGCAAAGAGGATCCCGTTGGCCTGCTACGCGCTCAGCGAA
ACGGAACGCTAAACGAG
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