mRNA_Ecto-sp13_S_contig19495.6271.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig19495.6271.1
Unique NamemRNA_Ecto-sp13_S_contig19495.6271.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig19495.6271.1 vs. uniprot
Match: A0A6H5K346_9PHAE (GB1/RHD3-type G domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K346_9PHAE)

HSP 1 Score: 228 bits (581), Expect = 2.610e-69
Identity = 111/111 (100.00%), Postives = 111/111 (100.00%), Query Frame = 1
Query:    1 QITSCFEKISCFGLTHPGFDVVKKTFSGDISKIQPSFLRLLNTYVRHIFGELLEPKRINGRFLTAPELRNYASAYVELFHNGAHFPAARSLLEATAGAHNGNAKHVALHKY 333
            QITSCFEKISCFGLTHPGFDVVKKTFSGDISKIQPSFLRLLNTYVRHIFGELLEPKRINGRFLTAPELRNYASAYVELFHNGAHFPAARSLLEATAGAHNGNAKHVALHKY
Sbjct:  389 QITSCFEKISCFGLTHPGFDVVKKTFSGDISKIQPSFLRLLNTYVRHIFGELLEPKRINGRFLTAPELRNYASAYVELFHNGAHFPAARSLLEATAGAHNGNAKHVALHKY 499          
BLAST of mRNA_Ecto-sp13_S_contig19495.6271.1 vs. uniprot
Match: A0A836CGS0_9STRA (Anti-viral guanylate-binding protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CGS0_9STRA)

HSP 1 Score: 147 bits (371), Expect = 1.780e-39
Identity = 71/111 (63.96%), Postives = 83/111 (74.77%), Query Frame = 1
Query:    1 QITSCFEKISCFGLTHPGFDVVKKTFSGDISKIQPSFLRLLNTYVRHIFGELLEPKRINGRFLTAPELRNYASAYVELFHNGAHFPAARSLLEATAGAHNGNAKHVALHKY 333
            QI +CFEK+SCFGL HPG DVVKK + G I KI  +F  LL+ YVR +FG  LEPKRI+GR+LTAPEL  Y SAYV LFH GA FP A++LLEAT+ A+N NAK  AL  Y
Sbjct:  283 QIMACFEKVSCFGLCHPGMDVVKKNYDGSIDKIDATFRALLDAYVRRVFGNELEPKRIHGRYLTAPELSTYISAYVRLFHEGASFPEAKTLLEATSAANNSNAKFAALATY 393          
BLAST of mRNA_Ecto-sp13_S_contig19495.6271.1 vs. uniprot
Match: A0A7S2Y023_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y023_9STRA)

HSP 1 Score: 128 bits (322), Expect = 2.420e-36
Identity = 63/104 (60.58%), Postives = 77/104 (74.04%), Query Frame = 1
Query:    1 QITSCFEKISCFGLTHPGFDVVKKTFSGDISKIQPSFLRLLNTYVRHIFGELLEPKRINGRFLTAPELRNYASAYVELFHNGAHFPAARSLLEATAGAHNGNAK 312
            QI SC+E ISCF LTHPGF+V KKT+ G+I KI P+F  LLN ++R +FG  LEPKRI  R LTA EL  Y  AYV LF  G+ FPAA+++LEATA A+N NA+
Sbjct:    6 QIISCYENISCFALTHPGFEVTKKTYDGNIQKIDPTFRMLLNHFMRVVFGFNLEPKRIRNRMLTALELSTYIKAYVSLFAEGSKFPAAKTMLEATAEANNRNAR 109          
BLAST of mRNA_Ecto-sp13_S_contig19495.6271.1 vs. uniprot
Match: A0A4D9DBZ0_9STRA (GB1/RHD3-type G domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9DBZ0_9STRA)

HSP 1 Score: 130 bits (326), Expect = 4.830e-33
Identity = 63/111 (56.76%), Postives = 80/111 (72.07%), Query Frame = 1
Query:    1 QITSCFEKISCFGLTHPGFDVVKKTFSGDISKIQPSFLRLLNTYVRHIFGELLEPKRINGRFLTAPELRNYASAYVELFHNGAHFPAARSLLEATAGAHNGNAKHVALHKY 333
            QI  CF+K+ CF L HPG +V KK +SG+++ I P F RLLN Y R +FG  LE KRI+ R LTAPELR Y S+YVE+F +G  FP A+++LEATA A+N NA  +AL KY
Sbjct:  309 QILGCFQKVRCFVLPHPGLEVPKKAYSGEVALINPFFRRLLNHYAREVFGPELEAKRIHKRDLTAPELRQYVSSYVEMFKSGTRFPEAQTMLEATASANNQNATQLALSKY 419          
BLAST of mRNA_Ecto-sp13_S_contig19495.6271.1 vs. uniprot
Match: A0A7S2NXQ9_9STRA (Hypothetical protein n=2 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2NXQ9_9STRA)

HSP 1 Score: 120 bits (300), Expect = 2.200e-29
Identity = 61/111 (54.95%), Postives = 78/111 (70.27%), Query Frame = 1
Query:    1 QITSCFEKISCFGLTHPGFDVVKKTFSGDISKIQPSFLRLLNTYVRHIFGELLEPKRINGRFLTAPELRNYASAYVELFHNGAHFPAARSLLEATAGAHNGNAKHVALHKY 333
             I+S FEKISCF +THPGF V KK + GD+SKI+P+FL LL+ + R +FGE L+PK I+GR LTA EL  +  AY  LF NGA FP A ++LEATA A+N  A +  +  Y
Sbjct:  321 HISSSFEKISCFMMTHPGFAVTKKKYEGDVSKIEPTFLVLLDKFCRKVFGENLQPKTIHGRELTASELAAFMEAYALLFKNGAAFPEASTMLEATASANNTVAVNATISTY 431          
BLAST of mRNA_Ecto-sp13_S_contig19495.6271.1 vs. uniprot
Match: A0A1E7ELI6_9STRA (GBP-domain-containing protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7ELI6_9STRA)

HSP 1 Score: 118 bits (295), Expect = 9.540e-29
Identity = 57/112 (50.89%), Postives = 83/112 (74.11%), Query Frame = 1
Query:    1 QITSCFEKISCFGLTHPGFDVVKKTFSGDISKIQPSFLRLLNTYVRHIFG-ELLEPKRINGRFLTAPELRNYASAYVELFHNGAHFPAARSLLEATAGAHNGNAKHVALHKY 333
            QI +CFEK +CFGL+HPG  V+KK F G++SK+  +FL LL+ Y + +F  + L+PK I+GR +TA EL +Y  AY E+F +GA FP A ++LEATA A+N NA ++A+++Y
Sbjct:  297 QIQACFEKTTCFGLSHPGMPVIKKNFQGEVSKMDETFLNLLDRYCKRVFSVDNLKPKVIHGREVTAVELGSYIKAYAEMFASGASFPEASTMLEATATANNSNAVNLAVNQY 408          
BLAST of mRNA_Ecto-sp13_S_contig19495.6271.1 vs. uniprot
Match: A0A7S4AA67_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4AA67_9STRA)

HSP 1 Score: 117 bits (294), Expect = 1.490e-28
Identity = 58/112 (51.79%), Postives = 80/112 (71.43%), Query Frame = 1
Query:    1 QITSCFEKISCFGLTHPGFDVVKKTFSGDISKIQPSFLRLLNTYVRHIFG-ELLEPKRINGRFLTAPELRNYASAYVELFHNGAHFPAARSLLEATAGAHNGNAKHVALHKY 333
            QI +CFEK +CFGL+HPG  V+KK F G++SK+  +FL LL+ Y R +F  E L+PK I GR +TA EL ++  AY E+F +GA FP A ++LEATA A+N NA ++A+  Y
Sbjct:  332 QILACFEKTTCFGLSHPGMAVIKKNFKGEVSKMDDTFLNLLDRYCRRVFSVENLKPKVIQGREVTAAELGSFIKAYAEMFASGASFPEAATMLEATAAANNSNAVNLAVSMY 443          
BLAST of mRNA_Ecto-sp13_S_contig19495.6271.1 vs. uniprot
Match: A0A7S1D8P8_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1D8P8_CYCTE)

HSP 1 Score: 115 bits (288), Expect = 1.550e-28
Identity = 62/112 (55.36%), Postives = 74/112 (66.07%), Query Frame = 1
Query:    1 QITSCFEKISCFGLTHPGFDVVKKTFSGDISKIQPSFLRLLNTYVRHIFG-ELLEPKRINGRFLTAPELRNYASAYVELFHNGAHFPAARSLLEATAGAHNGNAKHVALHKY 333
            QI SCFEKISC+GL HPG  V KK F+GDI  I  +FL LL+ Y R +F  E L+PK I GR LTA EL +Y  AY  LF  GA FP A +LLEAT+  +N NA  V+  +Y
Sbjct:  103 QIISCFEKISCYGLVHPGIAVTKKKFTGDIQAIDETFLLLLDRYCRRVFNVEKLQPKVIYGRELTAVELGSYIKAYANLFATGAEFPEAATLLEATSATNNTNAVVVSFEEY 214          
BLAST of mRNA_Ecto-sp13_S_contig19495.6271.1 vs. uniprot
Match: A0A7S0XL21_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia delicatissima TaxID=44447 RepID=A0A7S0XL21_9STRA)

HSP 1 Score: 116 bits (290), Expect = 4.660e-28
Identity = 57/112 (50.89%), Postives = 80/112 (71.43%), Query Frame = 1
Query:    1 QITSCFEKISCFGLTHPGFDVVKKTFSGDISKIQPSFLRLLNTYVRHIFG-ELLEPKRINGRFLTAPELRNYASAYVELFHNGAHFPAARSLLEATAGAHNGNAKHVALHKY 333
            QI +CFEK +CFGL+HPG  V+KK F G+++K+  +FL LL+ Y R +F  + L PK I GR +TA EL ++  AY E+F +GA FP A ++LEATA A+N NA ++A+ KY
Sbjct:  296 QIHACFEKTTCFGLSHPGMAVIKKNFKGEVAKMDETFLNLLDRYCRRVFSVDNLTPKVIQGREVTAAELGSFIKAYAEMFASGASFPEASTMLEATATANNSNAVNLAIKKY 407          
BLAST of mRNA_Ecto-sp13_S_contig19495.6271.1 vs. uniprot
Match: A0A7S2D4G1_9STRA (Hypothetical protein n=2 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2D4G1_9STRA)

HSP 1 Score: 114 bits (284), Expect = 2.690e-27
Identity = 56/111 (50.45%), Postives = 76/111 (68.47%), Query Frame = 1
Query:    1 QITSCFEKISCFGLTHPGFDVVKKTFSGDISKIQPSFLRLLNTYVRHIFGELLEPKRINGRFLTAPELRNYASAYVELFHNGAHFPAARSLLEATAGAHNGNAKHVALHKY 333
            QITSCF+ ISCF L HPG  + K +++GDI KI+  F  +L  Y+ HIF   L+PK I+GR LTA EL  +   YV+LF +GA FP A+++L+ATA A+N NA  +A  K+
Sbjct:  275 QITSCFDNISCFLLPHPGLKIQKSSYTGDIDKIEDDFRDMLTLYMNHIFNVDLKPKEIDGRALTASELGVFTKTYVDLFKDGASFPEAKTVLQATAEANNNNALSLAYKKF 385          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig19495.6271.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K346_9PHAE2.610e-69100.00GB1/RHD3-type G domain-containing protein n=2 Tax=... [more]
A0A836CGS0_9STRA1.780e-3963.96Anti-viral guanylate-binding protein n=1 Tax=Tribo... [more]
A0A7S2Y023_9STRA2.420e-3660.58Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A4D9DBZ0_9STRA4.830e-3356.76GB1/RHD3-type G domain-containing protein n=2 Tax=... [more]
A0A7S2NXQ9_9STRA2.200e-2954.95Hypothetical protein n=2 Tax=Leptocylindrus danicu... [more]
A0A1E7ELI6_9STRA9.540e-2950.89GBP-domain-containing protein n=1 Tax=Fragilariops... [more]
A0A7S4AA67_9STRA1.490e-2851.79Hypothetical protein n=1 Tax=Pseudo-nitzschia aust... [more]
A0A7S1D8P8_CYCTE1.550e-2855.36Hypothetical protein n=1 Tax=Cyclophora tenuis Tax... [more]
A0A7S0XL21_9STRA4.660e-2850.89Hypothetical protein n=1 Tax=Pseudo-nitzschia deli... [more]
A0A7S2D4G1_9STRA2.690e-2750.45Hypothetical protein n=2 Tax=Dictyocha speculum Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig19495contigEcto-sp13_S_contig19495:2189..3187 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score229.2
Seed ortholog evalue9.6e-58
Seed eggNOG ortholog2880.D7FX45
Model size333
KEGG koko:K17339
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.GTPase activity
EggNOG OGsKOG2037@1,KOG2037@2759
Cds size333
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462988.2877634-CDS-Ecto-sp13_S_contig19495:2188..23651681462988.2877634-CDS-Ecto-sp13_S_contig19495:2188..2365Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19495 2189..2365 -
1681462988.2978053-CDS-Ecto-sp13_S_contig19495:3031..31871681462988.2978053-CDS-Ecto-sp13_S_contig19495:3031..3187Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19495 3032..3187 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig19495.6271.1prot_Ecto-sp13_S_contig19495.6271.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig19495 2189..3187 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig19495.6271.1

>prot_Ecto-sp13_S_contig19495.6271.1 ID=prot_Ecto-sp13_S_contig19495.6271.1|Name=mRNA_Ecto-sp13_S_contig19495.6271.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=111bp
QITSCFEKISCFGLTHPGFDVVKKTFSGDISKIQPSFLRLLNTYVRHIFG
ELLEPKRINGRFLTAPELRNYASAYVELFHNGAHFPAARSLLEATAGAHN
GNAKHVALHKY
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mRNA from alignment at Ecto-sp13_S_contig19495:2189..3187-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig19495.6271.1 ID=mRNA_Ecto-sp13_S_contig19495.6271.1|Name=mRNA_Ecto-sp13_S_contig19495.6271.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=999bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19495:2189..3187- (Ectocarpus species13 EcNAP12_S_4_19m)
CAGATCACGTCGTGCTTCGAGAAAATCTCCTGCTTCGGCCTAACGCACCC GGGTTTCGACGTGGTCAAGAAGACCTTCAGCGGCGACATCTCGAAGATCC AGCCTTCCTTCCTGCGGCTGCTTAACACCTACGTGCGCCACATCTTCGGA GAGCTGGTGAGGGATGACGTCGTTGTCAGCGGTCAAGATTATATATTATA TTTTTAGCATCGACCGCATTAAGCGGCTATTACCAATGAACAGACGCCAG CACCACCGGGTACAATCAAGGTATCTGTCTCTGTGTGTTGTTTGTTGTCC ATAGCATCGACTGCGCTTACCGGCTGGCCAACGAAAGGACGTCAGTCTCA GTACGGTTGACAGCACAGAATGCTTCTCAAGGCTGTGTGTCGTTGTTTAT AGCATCGGCCGCGCTTACCGGCTGACCAATGAAAGGACGTCAGTCTCAGC GTGGTTGAAAACACGAAATGCTTCTTAAGGCCATGTGTGTGTGTGTGTCG TTGTTCATAGCATCGGCCGCGCTAACCGGCTGACCAATGAAAGGACGTCA GTCTCAGTGTGGTTGAAACACGAACTGCTTCTTAAGGCCATGTGTGTGTG TGTGTCGTTGTTCATAGCATCGGCCGCGCTAACCGGCTGACCAATGAAAG GACGTCAGTCTCAGTGTGGTCGAACACACGAATGCTTCTCAGGGCCATAT GTGTGTGTGTGTGTCGTTATTGAAAGCATCGACCACCTTCACCGGCTGAC CAACGAAAATACGTCAGCCTCAGGTCTCGGCTAACAAACAGGAGACGTTT TTTTTTGCTTTCTTTCGTGCAGCTGGAGCCGAAGAGAATCAACGGCCGCT TCCTGACGGCGCCCGAGCTCCGCAACTACGCCTCCGCGTACGTGGAGCTC TTCCACAACGGCGCGCACTTCCCCGCGGCCCGATCGCTGCTCGAGGCGAC CGCGGGGGCTCACAACGGCAACGCTAAGCACGTGGCGCTCCACAAGTAC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig19495:2189..3187-

>mRNA_Ecto-sp13_S_contig19495.6271.1 ID=mRNA_Ecto-sp13_S_contig19495.6271.1|Name=mRNA_Ecto-sp13_S_contig19495.6271.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=333bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19495:2189..3187- (Ectocarpus species13 EcNAP12_S_4_19m)
CAGATCACGTCGTGCTTCGAGAAAATCTCCTGCTTCGGCCTAACGCACCC
GGGTTTCGACGTGGTCAAGAAGACCTTCAGCGGCGACATCTCGAAGATCC
AGCCTTCCTTCCTGCGGCTGCTTAACACCTACGTGCGCCACATCTTCGGA
GAGCTGCTGGAGCCGAAGAGAATCAACGGCCGCTTCCTGACGGCGCCCGA
GCTCCGCAACTACGCCTCCGCGTACGTGGAGCTCTTCCACAACGGCGCGC
ACTTCCCCGCGGCCCGATCGCTGCTCGAGGCGACCGCGGGGGCTCACAAC
GGCAACGCTAAGCACGTGGCGCTCCACAAGTAC
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