mRNA_Ecto-sp13_S_contig19477.6259.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig19477.6259.1 vs. uniprot
Match: D7FPK8_ECTSI (Putative membrane transporter (ISS) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPK8_ECTSI) HSP 1 Score: 244 bits (624), Expect = 2.190e-77 Identity = 122/127 (96.06%), Postives = 124/127 (97.64%), Query Frame = 1
Query: 1 ASYFTHKVADSQPATGCVLVLGMLVFAGLFAVNSSVHSYLIVSYSNKDKVAMDLGFYYMANAMGRLIGVLVGGFLYHYTSDDFGLSMCLVVACPFLVAAAAISYHLPGPATPPSSTTPDIELKAAGA 381
ASYFTHKVADSQ ATGCVLVLGMLVFAGLFAVNSSVHSYLIVSYSNKDKVAMDLGFYYMANAMGRLIGVLVGGFLYHYTSDDFGLSMCLVVACPFLVAA+AI+Y LPGPATPPS TTPDIELKAAGA
Sbjct: 334 ASYFTHKVADSQLATGCVLVLGMLVFAGLFAVNSSVHSYLIVSYSNKDKVAMDLGFYYMANAMGRLIGVLVGGFLYHYTSDDFGLSMCLVVACPFLVAASAIAYRLPGPATPPSPTTPDIELKAAGA 460
BLAST of mRNA_Ecto-sp13_S_contig19477.6259.1 vs. uniprot
Match: A0A6H5KIX3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIX3_9PHAE) HSP 1 Score: 202 bits (513), Expect = 4.610e-61 Identity = 100/104 (96.15%), Postives = 101/104 (97.12%), Query Frame = 1
Query: 70 LVFAGLFAVNSSVHSYLIVSYSNKDKVAMDLGFYYMANAMGRLIGVLVGGFLYHYTSDDFGLSMCLVVACPFLVAAAAISYHLPGPATPPSSTTPDIELKAAGA 381
L+ AGLFAVNSSVHSYLIVSYSNKDKVAMDLGFYYMANAMGRLIGVLVGGFLYHYTSDDFGLSMCLVVACPFLVAAAAISYHLPGPATPPS TTPDIE KAAGA
Sbjct: 328 LIMAGLFAVNSSVHSYLIVSYSNKDKVAMDLGFYYMANAMGRLIGVLVGGFLYHYTSDDFGLSMCLVVACPFLVAAAAISYHLPGPATPPSPTTPDIEFKAAGA 431
BLAST of mRNA_Ecto-sp13_S_contig19477.6259.1 vs. uniprot
Match: A0A836CH56_9STRA (Putative membrane transporter n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CH56_9STRA) HSP 1 Score: 133 bits (335), Expect = 2.950e-34 Identity = 68/118 (57.63%), Postives = 87/118 (73.73%), Query Frame = 1
Query: 7 YFTHKVAD--SQPATGCVLVLGMLVFAGLFAVNSSVHSYLIVSYSNKDKVAMDLGFYYMANAMGRLIGVLVGGFLYHYTSDDFGLSMCLVVACPFLVAAAAISYHLPGPATPPSSTTP 354
Y T++V D S A+ VLVLG+ +FA +FAVNS++HSYLIVSYS+KDKV+MDLGFYYM+NA+GRL+GVL+GG +Y YT D+FGLS+ L +A PFL+ A I L G P P
Sbjct: 350 YITYEVVDTGSNVASTVVLVLGLTLFAAVFAVNSAIHSYLIVSYSDKDKVSMDLGFYYMSNALGRLVGVLLGGVVYQYTVDEFGLSVVLWIAAPFLMFAGVIGSFLKGARLGPKLPVP 467
BLAST of mRNA_Ecto-sp13_S_contig19477.6259.1 vs. uniprot
Match: A0A430KVB4_9GAMM (MFS transporter n=2 Tax=Amphritea TaxID=515417 RepID=A0A430KVB4_9GAMM) HSP 1 Score: 111 bits (278), Expect = 1.280e-26 Identity = 59/100 (59.00%), Postives = 75/100 (75.00%), Query Frame = 1
Query: 52 VLVLGMLVFAGLFAVNSSVHSYLIVSYSNKDKVAMDLGFYYMANAMGRLIGVLVGGFLYHYTSDDFGLSMCLVVACPFLVAAAAISYHLPGPATPPSSTT 351
VL+ G+L+F LFAVNSS+HSYLIVSY+ +D V++D+GFYYMANAMGRLIG L+ G+LY DFGL+ CL VA F++ A IS LP TP ++TT
Sbjct: 315 VLIGGLLIFGALFAVNSSLHSYLIVSYAGEDGVSLDVGFYYMANAMGRLIGTLLSGWLY----QDFGLAACLWVATLFILITALISLGLPKHQTPVAATT 410
BLAST of mRNA_Ecto-sp13_S_contig19477.6259.1 vs. uniprot
Match: A0A7S2WN85_9STRA (Hypothetical protein n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2WN85_9STRA) HSP 1 Score: 112 bits (280), Expect = 1.610e-26 Identity = 53/105 (50.48%), Postives = 76/105 (72.38%), Query Frame = 1
Query: 4 SYFTHKVADSQPATGCVLVLGMLVFAGLFAVNSSVHSYLIVSYSNKDKVAMDLGFYYMANAMGRLIGVLVGGFLYHYTSDDFGLSMCLVVACPFLVAAAAISYHL 318
SY +++ A+ VL++G+ V+A FA NS++HSYLIV Y+ KDK+ MD+GFYYMANAMGRL+G ++ G +Y +T + FGLSMC+ VA F++ AA S +L
Sbjct: 397 SYRNLVSTNNRIASATVLLIGLFVYAFFFATNSAIHSYLIVLYAGKDKLTMDMGFYYMANAMGRLVGTILSGVIYQFTVEYFGLSMCMWVAAVFMLLAAISSRYL 501
BLAST of mRNA_Ecto-sp13_S_contig19477.6259.1 vs. uniprot
Match: A0A4P6P6H6_9GAMM (MFS transporter n=1 Tax=Litorilituus sediminis TaxID=718192 RepID=A0A4P6P6H6_9GAMM) HSP 1 Score: 109 bits (273), Expect = 6.360e-26 Identity = 52/89 (58.43%), Postives = 70/89 (78.65%), Query Frame = 1
Query: 55 LVLGMLVFAGLFAVNSSVHSYLIVSYSNKDKVAMDLGFYYMANAMGRLIGVLVGGFLYHYTSDDFGLSMCLVVACPFLVAAAAISYHLP 321
L++G+L+F +FAVNSS+HSYLIVSY+ +D V++D+GFYYMANAMGRLIG ++ GFLY +GL+ CL V+C F+ AAA+S LP
Sbjct: 318 LIVGLLIFGAVFAVNSSLHSYLIVSYAGRDGVSLDVGFYYMANAMGRLIGTVLSGFLY----QQYGLATCLWVSCAFIALAAALSIKLP 402
BLAST of mRNA_Ecto-sp13_S_contig19477.6259.1 vs. uniprot
Match: A0A836CEU1_9STRA (Putative membrane transporter n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CEU1_9STRA) HSP 1 Score: 110 bits (274), Expect = 6.470e-26 Identity = 52/95 (54.74%), Postives = 73/95 (76.84%), Query Frame = 1
Query: 1 ASYFTHKVADSQPATGCVLVL--GMLVFAGLFAVNSSVHSYLIVSYSNKDKVAMDLGFYYMANAMGRLIGVLVGGFLYHYTSDDFGLSMCLVVAC 279
A YFT+ D ++VL G+L F+ +FAVNS++HSYLIVS+S++DKV+ D+GFYYM+NA GRL+GVL+GG +Y Y+ D++GLSM + VAC
Sbjct: 329 ALYFTYDAHDPTDNVASIVVLCAGILAFSAVFAVNSAIHSYLIVSFSDQDKVSQDVGFYYMSNAGGRLVGVLLGGIVYQYSVDEYGLSMHVTVAC 423
BLAST of mRNA_Ecto-sp13_S_contig19477.6259.1 vs. uniprot
Match: A0A090T8W0_9VIBR (Permease of the major facilitator superfamily n=1 Tax=Vibrio maritimus TaxID=990268 RepID=A0A090T8W0_9VIBR) HSP 1 Score: 99.8 bits (247), Expect = 6.950e-25 Identity = 50/91 (54.95%), Postives = 67/91 (73.63%), Query Frame = 1
Query: 52 VLVLGMLVFAGLFAVNSSVHSYLIVSYSNKDKVAMDLGFYYMANAMGRLIGVLVGGFLYHYTSDDFGLSMCLVVACPFLVAAAAISYHLPG 324
V+V+G+L+F +FAVNSS+HSYLIVSY+ D V+MD+GFYYMANAMGRLIG ++ G+++ GL+ C+ V+ FLV IS LPG
Sbjct: 2 VIVVGLLIFGAIFAVNSSLHSYLIVSYAKGDGVSMDVGFYYMANAMGRLIGTVLSGWVFQVA----GLAACMWVSFAFLVLTTIISIRLPG 88
BLAST of mRNA_Ecto-sp13_S_contig19477.6259.1 vs. uniprot
Match: A0A1Y5E5R4_9PROT (MFS transporter n=1 Tax=Alphaproteobacteria bacterium 46_93_T64 TaxID=1856292 RepID=A0A1Y5E5R4_9PROT) HSP 1 Score: 106 bits (265), Expect = 9.270e-25 Identity = 52/97 (53.61%), Postives = 75/97 (77.32%), Query Frame = 1
Query: 55 LVLGMLVFAGLFAVNSSVHSYLIVSYSNKDKVAMDLGFYYMANAMGRLIGVLVGGFLYHYTSDDFGLSMCLVVACPFLVAAAAISYHLPGPATPPSS 345
L++G+L+F LFAVNSS+HSYLI+SY+N+D V++D+GFYYMANA+GRLIG ++ G+++ +GLS CL+++ FL +AAISY LP PP +
Sbjct: 315 LLVGLLIFGALFAVNSSLHSYLIISYANRDSVSLDVGFYYMANALGRLIGTVLSGWVFQM----WGLSACLIISGFFLTLSAAISYFLPQFKHPPKA 407
BLAST of mRNA_Ecto-sp13_S_contig19477.6259.1 vs. uniprot
Match: F3LIY4_9GAMM (Putative transporter n=1 Tax=gamma proteobacterium IMCC1989 TaxID=937772 RepID=F3LIY4_9GAMM) HSP 1 Score: 103 bits (257), Expect = 1.100e-24 Identity = 45/103 (43.69%), Postives = 74/103 (71.84%), Query Frame = 1
Query: 13 THKVADSQPATGCVLVLGMLVFAGLFAVNSSVHSYLIVSYSNKDKVAMDLGFYYMANAMGRLIGVLVGGFLYHYTSDDFGLSMCLVVACPFLVAAAAISYHLP 321
T V P + ++++G+ +F G+FA+NSS+HSYLIV+Y+ +D ++D+GFYYMANA GRL+G+++ G++Y Y +GL+ CL+V+ F+ A +S+ LP
Sbjct: 141 TACVVHWLPLSSALIIVGLFIFGGVFAINSSIHSYLIVAYAREDHASLDVGFYYMANAAGRLVGIILSGWIYQY----YGLATCLIVSGAFVFATLIVSHLLP 239 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig19477.6259.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig19477.6259.1 >prot_Ecto-sp13_S_contig19477.6259.1 ID=prot_Ecto-sp13_S_contig19477.6259.1|Name=mRNA_Ecto-sp13_S_contig19477.6259.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=128bp ASYFTHKVADSQPATGCVLVLGMLVFAGLFAVNSSVHSYLIVSYSNKDKVback to top mRNA from alignment at Ecto-sp13_S_contig19477:1788..2969- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig19477.6259.1 ID=mRNA_Ecto-sp13_S_contig19477.6259.1|Name=mRNA_Ecto-sp13_S_contig19477.6259.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1182bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19477:1788..2969- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig19477:1788..2969- >mRNA_Ecto-sp13_S_contig19477.6259.1 ID=mRNA_Ecto-sp13_S_contig19477.6259.1|Name=mRNA_Ecto-sp13_S_contig19477.6259.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=384bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19477:1788..2969- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |