mRNA_Ecto-sp13_S_contig19474.6258.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig19474.6258.1
Unique NamemRNA_Ecto-sp13_S_contig19474.6258.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig19474.6258.1 vs. uniprot
Match: D7FI91_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI91_ECTSI)

HSP 1 Score: 157 bits (397), Expect = 6.110e-48
Identity = 71/84 (84.52%), Postives = 75/84 (89.29%), Query Frame = 3
Query:   63 PAFAGYDGGDCCACTCQTQSDDDSYYSWGCNVDYMACIDPDASCVDDDDVTAEMVENCEWVNDIGDGYCDDENNKAECGTRVRE 314
            PAFAGYDGGDCC CTCQTQSDDD YY   C+ DYMAC+DPDASCVDDDDVT EMVENCE+V+DIGDGYCDD NNKAECGT VRE
Sbjct:   25 PAFAGYDGGDCCECTCQTQSDDDFYYPENCDADYMACVDPDASCVDDDDVTVEMVENCEYVHDIGDGYCDDGNNKAECGTWVRE 108          
BLAST of mRNA_Ecto-sp13_S_contig19474.6258.1 vs. uniprot
Match: A0A6H5K2J7_9PHAE (LNR domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2J7_9PHAE)

HSP 1 Score: 147 bits (370), Expect = 3.270e-43
Identity = 68/77 (88.31%), Postives = 68/77 (88.31%), Query Frame = 3
Query:   66 AFAGYDGGDCCACTCQTQSDDDSYYSWGCNVDYMACIDPDASCVDDDDVTAEMVENCEWVNDIGDGYCDDENNKAEC 296
            A  GYDGGDCC CTCQTQSDDD YYSWGCN DYMACIDPDASCVDDDDVTAEMVENCEWV  IGDGYC D NNKAEC
Sbjct:   48 AECGYDGGDCCECTCQTQSDDD-YYSWGCNKDYMACIDPDASCVDDDDVTAEMVENCEWVAGIGDGYCHDGNNKAEC 123          
BLAST of mRNA_Ecto-sp13_S_contig19474.6258.1 vs. uniprot
Match: D7G6M7_ECTSI (LNR domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6M7_ECTSI)

HSP 1 Score: 118 bits (295), Expect = 1.330e-31
Identity = 57/83 (68.67%), Postives = 61/83 (73.49%), Query Frame = 3
Query:   66 AFAGYDGGDCCACTCQTQSDDDSYYSWGCNVDYMACIDPDASCVDDDDVTAEMVENCEWVNDIGDGYCDDENNKAECGTRVRE 314
            A  GYDGGDCC CTCQTQSDDD YYS  C+ +YMACIDPDASCVDDDDVT E+V NC     IGDG C+  NN  ECGT   E
Sbjct:   48 AECGYDGGDCCECTCQTQSDDD-YYSGRCDKEYMACIDPDASCVDDDDVTIELVANCSHAGAIGDGICEKGNNNPECGTLALE 129          
BLAST of mRNA_Ecto-sp13_S_contig19474.6258.1 vs. uniprot
Match: A0A6H5KC37_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KC37_9PHAE)

HSP 1 Score: 113 bits (283), Expect = 1.300e-29
Identity = 55/74 (74.32%), Postives = 61/74 (82.43%), Query Frame = 3
Query:   93 CCACTCQTQSDDDSYYSWGCNVDYMACIDPDASCVDDDDVTAEMVENCEWVNDIGDGYCDDENNKAECGTRVRE 314
            CC    QTQSD D+  SWGC+ DYMACIDPDASCVDDDDVTAEMVENC+ ++ IGDGYC+D NNKAECGT  RE
Sbjct:    8 CCPYPLQTQSDGDNN-SWGCHKDYMACIDPDASCVDDDDVTAEMVENCQSLDGIGDGYCEDGNNKAECGTLARE 80          
BLAST of mRNA_Ecto-sp13_S_contig19474.6258.1 vs. uniprot
Match: A0A6H5JXR2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXR2_9PHAE)

HSP 1 Score: 103 bits (257), Expect = 1.400e-23
Identity = 47/75 (62.67%), Postives = 54/75 (72.00%), Query Frame = 3
Query:   75 GYDGGDCCACTCQTQSDDDSYYSWGCNVDYMACIDPDASCVDDDDVTAEMVENCEWVNDIGDGYCDDENNKAECG 299
            GYDGGDCC CTC +  DDD    W C  +Y ACIDPDA CVDDDD+TA MVE C WV  +GDG+CD++NN   CG
Sbjct:   93 GYDGGDCCECTCVSPWDDDD--DWACR-NYNACIDPDAPCVDDDDITAVMVEECGWVRGVGDGWCDEDNNNELCG 164          
BLAST of mRNA_Ecto-sp13_S_contig19474.6258.1 vs. uniprot
Match: A0A6H5K4R2_9PHAE (LNR domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4R2_9PHAE)

HSP 1 Score: 101 bits (251), Expect = 1.850e-23
Identity = 48/77 (62.34%), Postives = 51/77 (66.23%), Query Frame = 3
Query:   78 YDGGDCCACTCQTQSDDDSYYSWGCNVDYMACIDPDASCVDDDDVTAEMVENCEWVNDIGDGYCDDENNKAECGTRV 308
            YDGGDCC CTC++  D   YY   C     ACIDP A CVDDDD TAE  E+C WV  IGDG CDDENNK ECG  V
Sbjct:  179 YDGGDCCECTCESHDDGYEYY---CKPGSFACIDPGAECVDDDDNTAEQYEHCGWVTRIGDGMCDDENNKEECGKGV 252          
BLAST of mRNA_Ecto-sp13_S_contig19474.6258.1 vs. uniprot
Match: D8LEP6_ECTSI (Uncharacterized protein n=3 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEP6_ECTSI)

HSP 1 Score: 101 bits (252), Expect = 2.150e-23
Identity = 47/74 (63.51%), Postives = 51/74 (68.92%), Query Frame = 3
Query:   78 YDGGDCCACTCQTQSDDDSYYSWGCNVDYMACIDPDASCVDDDDVTAEMVENCEWVNDIGDGYCDDENNKAECG 299
            YDGGDCC CTC++  D   YY   C     ACIDP+A CVDDDD TAE  E+C WV  IGDG CDDENNK ECG
Sbjct:  258 YDGGDCCECTCESHDDGYEYY---CEPGSFACIDPEAECVDDDDNTAEQYEHCGWVTRIGDGMCDDENNKEECG 328          
BLAST of mRNA_Ecto-sp13_S_contig19474.6258.1 vs. uniprot
Match: D7G3F4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3F4_ECTSI)

HSP 1 Score: 98.2 bits (243), Expect = 8.910e-22
Identity = 44/74 (59.46%), Postives = 56/74 (75.68%), Query Frame = 3
Query:   78 YDGGDCCACTCQTQSDDDSYYSWGCNVDYMACIDPDASCVDDDDVTAEMVENCEWVNDIGDGYCDDENNKAECG 299
            YDGGDCC+CTC++  DDD    WGC   + ACIDP+A+CVDDDD+T +M ENCE+  DIG+G+CD+ NN   CG
Sbjct:  147 YDGGDCCSCTCESPYDDD----WGCM--WFACIDPEAACVDDDDITVDMFENCEYPVDIGNGWCDEANNIEACG 214          
BLAST of mRNA_Ecto-sp13_S_contig19474.6258.1 vs. uniprot
Match: D7G0S4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0S4_ECTSI)

HSP 1 Score: 95.1 bits (235), Expect = 2.170e-21
Identity = 46/75 (61.33%), Postives = 52/75 (69.33%), Query Frame = 3
Query:   75 GYDGGDCCACTCQTQSDDDSYYSWGCNVDYMACIDPDASCVDDDDVTAEMVENCEWVNDIGDGYCDDENNKAECG 299
            GYDGGDCC CTC    DDD  YS   N    ACIDP A CVDDDDVT +MVENC +V  +G+G+CD+ENN   CG
Sbjct:   76 GYDGGDCCECTCVNAWDDD--YSCAAN---SACIDPSAPCVDDDDVTVDMVENCGYVGSVGNGWCDEENNNEGCG 145          
BLAST of mRNA_Ecto-sp13_S_contig19474.6258.1 vs. uniprot
Match: A0A6H5KB04_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KB04_9PHAE)

HSP 1 Score: 93.2 bits (230), Expect = 5.790e-20
Identity = 41/75 (54.67%), Postives = 53/75 (70.67%), Query Frame = 3
Query:   75 GYDGGDCCACTCQTQSDDDSYYSWGCNVDYMACIDPDASCVDDDDVTAEMVENCEWVNDIGDGYCDDENNKAECG 299
            GYDGGDCC CTC+ +S  D    W  +    +CIDP+A+CV DDD+T +M ENC +V+ IG+G+CD  NNK ECG
Sbjct:  114 GYDGGDCCECTCEYESPYDWDDDWDYHCREFSCIDPNAACVSDDDITVDMFENCGYVSGIGNGWCDRNNNKEECG 188          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig19474.6258.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FI91_ECTSI6.110e-4884.52Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K2J7_9PHAE3.270e-4388.31LNR domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7G6M7_ECTSI1.330e-3168.67LNR domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5KC37_9PHAE1.300e-2974.32Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JXR2_9PHAE1.400e-2362.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K4R2_9PHAE1.850e-2362.34LNR domain-containing protein n=1 Tax=Ectocarpus s... [more]
D8LEP6_ECTSI2.150e-2363.51Uncharacterized protein n=3 Tax=Ectocarpus silicul... [more]
D7G3F4_ECTSI8.910e-2259.46Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G0S4_ECTSI2.170e-2161.33Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KB04_9PHAE5.790e-2054.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig19474contigEcto-sp13_S_contig19474:153..759 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size314
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size159
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462987.557229-CDS-Ecto-sp13_S_contig19474:152..2651681462987.557229-CDS-Ecto-sp13_S_contig19474:152..265Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19474 153..265 +
1681462987.5674064-CDS-Ecto-sp13_S_contig19474:558..6041681462987.5674064-CDS-Ecto-sp13_S_contig19474:558..604Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19474 559..604 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462987.5835927-UTR-Ecto-sp13_S_contig19474:604..7591681462987.5835927-UTR-Ecto-sp13_S_contig19474:604..759Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig19474 605..759 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig19474.6258.1prot_Ecto-sp13_S_contig19474.6258.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig19474 153..604 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig19474.6258.1

>prot_Ecto-sp13_S_contig19474.6258.1 ID=prot_Ecto-sp13_S_contig19474.6258.1|Name=mRNA_Ecto-sp13_S_contig19474.6258.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=53bp
MRLVSNLGPISCSSCCRSLSSPPSQATTAVTAAHALARLKATTTPTIRGV
VM*
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mRNA from alignment at Ecto-sp13_S_contig19474:153..759+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig19474.6258.1 ID=mRNA_Ecto-sp13_S_contig19474.6258.1|Name=mRNA_Ecto-sp13_S_contig19474.6258.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=607bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19474:153..759+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAGGCTCGTCTCTAACTTAGGACCGATTTCTTGCTCTTCCTGTTGCCG TTCGTTGTCATCCCCGCCTTCGCAGGCTACGACGGCGGTGACTGCTGCGC ATGCACTTGCCAGGTACGATCTGCTTTTCCCGCAAGTTTTCATTCGAGAT GTTGACTCTGCTCTCTCGGTTGGTGCACCTCCCTTTCCGCCCTCGATAAT CTGGTTGACCTAAGTGCCCAATTGACAACACTTGTTCGTAAGGACACATT GCACGTCGGATGCGCATGCGAGGCGCAAATATACTCATGCGAGAGTTTTC CATGCAGCATGGCCGTGGTTCTCTCTCGCAGTACCCCGTCATTGCCGGCC CGCCGTCCCTGATAAATTTTTACCGCCTCCGCTGCTGACGCCCCTACCCG CTCAAGACTCAAAGCGACGACGACTCCTACTATTCGTGGGGTTGTAATGT AGACTACATGGCCTGCATCGACCCGGACGCCTCTTGCGTCGACGACGACG ACGTTACCGCTGAAATGGTGGAGAACTGTGAATGGGTTAACGATATCGGG GACGGTTACTGTGACGACGAGAACAACAAAGCAGAGTGCGGTACGAGGGT CCGGGAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig19474:153..759+

>mRNA_Ecto-sp13_S_contig19474.6258.1 ID=mRNA_Ecto-sp13_S_contig19474.6258.1|Name=mRNA_Ecto-sp13_S_contig19474.6258.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=159bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19474:153..759+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAGGCTCGTCTCTAACTTAGGACCGATTTCTTGCTCTTCCTGTTGCCG
TTCGTTGTCATCCCCGCCTTCGCAGGCTACGACGGCGGTGACTGCTGCGC
ATGCACTTGCCAGACTCAAAGCGACGACGACTCCTACTATTCGTGGGGTT
GTAATGTAG
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