mRNA_Ecto-sp13_S_contig19474.6258.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig19474.6258.1 vs. uniprot
Match: D7FI91_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI91_ECTSI) HSP 1 Score: 157 bits (397), Expect = 6.110e-48 Identity = 71/84 (84.52%), Postives = 75/84 (89.29%), Query Frame = 3
Query: 63 PAFAGYDGGDCCACTCQTQSDDDSYYSWGCNVDYMACIDPDASCVDDDDVTAEMVENCEWVNDIGDGYCDDENNKAECGTRVRE 314
PAFAGYDGGDCC CTCQTQSDDD YY C+ DYMAC+DPDASCVDDDDVT EMVENCE+V+DIGDGYCDD NNKAECGT VRE
Sbjct: 25 PAFAGYDGGDCCECTCQTQSDDDFYYPENCDADYMACVDPDASCVDDDDVTVEMVENCEYVHDIGDGYCDDGNNKAECGTWVRE 108
BLAST of mRNA_Ecto-sp13_S_contig19474.6258.1 vs. uniprot
Match: A0A6H5K2J7_9PHAE (LNR domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2J7_9PHAE) HSP 1 Score: 147 bits (370), Expect = 3.270e-43 Identity = 68/77 (88.31%), Postives = 68/77 (88.31%), Query Frame = 3
Query: 66 AFAGYDGGDCCACTCQTQSDDDSYYSWGCNVDYMACIDPDASCVDDDDVTAEMVENCEWVNDIGDGYCDDENNKAEC 296
A GYDGGDCC CTCQTQSDDD YYSWGCN DYMACIDPDASCVDDDDVTAEMVENCEWV IGDGYC D NNKAEC
Sbjct: 48 AECGYDGGDCCECTCQTQSDDD-YYSWGCNKDYMACIDPDASCVDDDDVTAEMVENCEWVAGIGDGYCHDGNNKAEC 123
BLAST of mRNA_Ecto-sp13_S_contig19474.6258.1 vs. uniprot
Match: D7G6M7_ECTSI (LNR domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6M7_ECTSI) HSP 1 Score: 118 bits (295), Expect = 1.330e-31 Identity = 57/83 (68.67%), Postives = 61/83 (73.49%), Query Frame = 3
Query: 66 AFAGYDGGDCCACTCQTQSDDDSYYSWGCNVDYMACIDPDASCVDDDDVTAEMVENCEWVNDIGDGYCDDENNKAECGTRVRE 314
A GYDGGDCC CTCQTQSDDD YYS C+ +YMACIDPDASCVDDDDVT E+V NC IGDG C+ NN ECGT E
Sbjct: 48 AECGYDGGDCCECTCQTQSDDD-YYSGRCDKEYMACIDPDASCVDDDDVTIELVANCSHAGAIGDGICEKGNNNPECGTLALE 129
BLAST of mRNA_Ecto-sp13_S_contig19474.6258.1 vs. uniprot
Match: A0A6H5KC37_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KC37_9PHAE) HSP 1 Score: 113 bits (283), Expect = 1.300e-29 Identity = 55/74 (74.32%), Postives = 61/74 (82.43%), Query Frame = 3
Query: 93 CCACTCQTQSDDDSYYSWGCNVDYMACIDPDASCVDDDDVTAEMVENCEWVNDIGDGYCDDENNKAECGTRVRE 314
CC QTQSD D+ SWGC+ DYMACIDPDASCVDDDDVTAEMVENC+ ++ IGDGYC+D NNKAECGT RE
Sbjct: 8 CCPYPLQTQSDGDNN-SWGCHKDYMACIDPDASCVDDDDVTAEMVENCQSLDGIGDGYCEDGNNKAECGTLARE 80
BLAST of mRNA_Ecto-sp13_S_contig19474.6258.1 vs. uniprot
Match: A0A6H5JXR2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXR2_9PHAE) HSP 1 Score: 103 bits (257), Expect = 1.400e-23 Identity = 47/75 (62.67%), Postives = 54/75 (72.00%), Query Frame = 3
Query: 75 GYDGGDCCACTCQTQSDDDSYYSWGCNVDYMACIDPDASCVDDDDVTAEMVENCEWVNDIGDGYCDDENNKAECG 299
GYDGGDCC CTC + DDD W C +Y ACIDPDA CVDDDD+TA MVE C WV +GDG+CD++NN CG
Sbjct: 93 GYDGGDCCECTCVSPWDDDD--DWACR-NYNACIDPDAPCVDDDDITAVMVEECGWVRGVGDGWCDEDNNNELCG 164
BLAST of mRNA_Ecto-sp13_S_contig19474.6258.1 vs. uniprot
Match: A0A6H5K4R2_9PHAE (LNR domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4R2_9PHAE) HSP 1 Score: 101 bits (251), Expect = 1.850e-23 Identity = 48/77 (62.34%), Postives = 51/77 (66.23%), Query Frame = 3
Query: 78 YDGGDCCACTCQTQSDDDSYYSWGCNVDYMACIDPDASCVDDDDVTAEMVENCEWVNDIGDGYCDDENNKAECGTRV 308
YDGGDCC CTC++ D YY C ACIDP A CVDDDD TAE E+C WV IGDG CDDENNK ECG V
Sbjct: 179 YDGGDCCECTCESHDDGYEYY---CKPGSFACIDPGAECVDDDDNTAEQYEHCGWVTRIGDGMCDDENNKEECGKGV 252
BLAST of mRNA_Ecto-sp13_S_contig19474.6258.1 vs. uniprot
Match: D8LEP6_ECTSI (Uncharacterized protein n=3 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEP6_ECTSI) HSP 1 Score: 101 bits (252), Expect = 2.150e-23 Identity = 47/74 (63.51%), Postives = 51/74 (68.92%), Query Frame = 3
Query: 78 YDGGDCCACTCQTQSDDDSYYSWGCNVDYMACIDPDASCVDDDDVTAEMVENCEWVNDIGDGYCDDENNKAECG 299
YDGGDCC CTC++ D YY C ACIDP+A CVDDDD TAE E+C WV IGDG CDDENNK ECG
Sbjct: 258 YDGGDCCECTCESHDDGYEYY---CEPGSFACIDPEAECVDDDDNTAEQYEHCGWVTRIGDGMCDDENNKEECG 328
BLAST of mRNA_Ecto-sp13_S_contig19474.6258.1 vs. uniprot
Match: D7G3F4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3F4_ECTSI) HSP 1 Score: 98.2 bits (243), Expect = 8.910e-22 Identity = 44/74 (59.46%), Postives = 56/74 (75.68%), Query Frame = 3
Query: 78 YDGGDCCACTCQTQSDDDSYYSWGCNVDYMACIDPDASCVDDDDVTAEMVENCEWVNDIGDGYCDDENNKAECG 299
YDGGDCC+CTC++ DDD WGC + ACIDP+A+CVDDDD+T +M ENCE+ DIG+G+CD+ NN CG
Sbjct: 147 YDGGDCCSCTCESPYDDD----WGCM--WFACIDPEAACVDDDDITVDMFENCEYPVDIGNGWCDEANNIEACG 214
BLAST of mRNA_Ecto-sp13_S_contig19474.6258.1 vs. uniprot
Match: D7G0S4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0S4_ECTSI) HSP 1 Score: 95.1 bits (235), Expect = 2.170e-21 Identity = 46/75 (61.33%), Postives = 52/75 (69.33%), Query Frame = 3
Query: 75 GYDGGDCCACTCQTQSDDDSYYSWGCNVDYMACIDPDASCVDDDDVTAEMVENCEWVNDIGDGYCDDENNKAECG 299
GYDGGDCC CTC DDD YS N ACIDP A CVDDDDVT +MVENC +V +G+G+CD+ENN CG
Sbjct: 76 GYDGGDCCECTCVNAWDDD--YSCAAN---SACIDPSAPCVDDDDVTVDMVENCGYVGSVGNGWCDEENNNEGCG 145
BLAST of mRNA_Ecto-sp13_S_contig19474.6258.1 vs. uniprot
Match: A0A6H5KB04_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KB04_9PHAE) HSP 1 Score: 93.2 bits (230), Expect = 5.790e-20 Identity = 41/75 (54.67%), Postives = 53/75 (70.67%), Query Frame = 3
Query: 75 GYDGGDCCACTCQTQSDDDSYYSWGCNVDYMACIDPDASCVDDDDVTAEMVENCEWVNDIGDGYCDDENNKAECG 299
GYDGGDCC CTC+ +S D W + +CIDP+A+CV DDD+T +M ENC +V+ IG+G+CD NNK ECG
Sbjct: 114 GYDGGDCCECTCEYESPYDWDDDWDYHCREFSCIDPNAACVSDDDITVDMFENCGYVSGIGNGWCDRNNNKEECG 188 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig19474.6258.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig19474.6258.1 >prot_Ecto-sp13_S_contig19474.6258.1 ID=prot_Ecto-sp13_S_contig19474.6258.1|Name=mRNA_Ecto-sp13_S_contig19474.6258.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=53bp MRLVSNLGPISCSSCCRSLSSPPSQATTAVTAAHALARLKATTTPTIRGVback to top mRNA from alignment at Ecto-sp13_S_contig19474:153..759+ Legend: CDSpolypeptideUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig19474.6258.1 ID=mRNA_Ecto-sp13_S_contig19474.6258.1|Name=mRNA_Ecto-sp13_S_contig19474.6258.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=607bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19474:153..759+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig19474:153..759+ >mRNA_Ecto-sp13_S_contig19474.6258.1 ID=mRNA_Ecto-sp13_S_contig19474.6258.1|Name=mRNA_Ecto-sp13_S_contig19474.6258.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=159bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19474:153..759+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |