mRNA_Ecto-sp13_S_contig19439.6243.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig19439.6243.1
Unique NamemRNA_Ecto-sp13_S_contig19439.6243.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig19439.6243.1 vs. uniprot
Match: A0A6H5L6K9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6K9_9PHAE)

HSP 1 Score: 316 bits (809), Expect = 7.730e-97
Identity = 160/166 (96.39%), Postives = 161/166 (96.99%), Query Frame = 1
Query:    4 LLALHCVSHNQNAFQDFMLHAAPVTRRQRQRGGGGVDMEEYARRMTSTRCDGDHITLQALCDALKVNINVVKWTRDDGWYPRTVTSATSNDAAAAXXXXAAVAEEPRRPSQSVFVADTLRPRAVSSLDARARDLQLQGRTLWLSLHGEAHFRSLRVRDPVTEAEAA 501
            LLALHCVSHNQNAFQDFMLHAAPVTRRQRQRGGGGVDMEEYARRMTSTRCDGDHITLQALCDALKVNINVVKWTRDDGWYPR VTSATSNDAAAA    AAVAEEPRRPS+SVFVADTLRPRAVSSLDARARDLQLQGRTLWLSLHGEAHFRSLRVRDPVTEAEAA
Sbjct:   97 LLALHCVSHNQNAFQDFMLHAAPVTRRQRQRGGGGVDMEEYARRMTSTRCDGDHITLQALCDALKVNINVVKWTRDDGWYPRPVTSATSNDAAAATNPPAAVAEEPRRPSRSVFVADTLRPRAVSSLDARARDLQLQGRTLWLSLHGEAHFRSLRVRDPVTEAEAA 262          
BLAST of mRNA_Ecto-sp13_S_contig19439.6243.1 vs. uniprot
Match: D7FVY3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVY3_ECTSI)

HSP 1 Score: 313 bits (802), Expect = 6.880e-96
Identity = 157/167 (94.01%), Postives = 162/167 (97.01%), Query Frame = 1
Query:    1 RLLALHCVSHNQNAFQDFMLHAAPVTRRQRQRGGGGVDMEEYARRMTSTRCDGDHITLQALCDALKVNINVVKWTRDDGWYPRTVTSATSNDAAAAXXXXAAVAEEPRRPSQSVFVADTLRPRAVSSLDARARDLQLQGRTLWLSLHGEAHFRSLRVRDPVTEAEAA 501
            RLLALHCVSHNQNAFQDFMLHAAPVTRRQRQRGGGGVDMEEYARRMTS+RCDGDHITLQALCDALKVNINVVKWTRDDGWYPRTV SAT+NDAA+A    AAVAEEPRRPS+SVFVADTLRPRAV+SLDARARDLQLQGRTLWLSLHGEAHFRSLRVRDPVTEAEAA
Sbjct:  134 RLLALHCVSHNQNAFQDFMLHAAPVTRRQRQRGGGGVDMEEYARRMTSSRCDGDHITLQALCDALKVNINVVKWTRDDGWYPRTVASATTNDAASASNPPAAVAEEPRRPSRSVFVADTLRPRAVASLDARARDLQLQGRTLWLSLHGEAHFRSLRVRDPVTEAEAA 300          
BLAST of mRNA_Ecto-sp13_S_contig19439.6243.1 vs. uniprot
Match: A0A7S1C001_9STRA (Hypothetical protein n=3 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1C001_9STRA)

HSP 1 Score: 95.9 bits (237), Expect = 3.190e-20
Identity = 57/175 (32.57%), Postives = 90/175 (51.43%), Query Frame = 1
Query:    1 RLLALHCVSHNQNAFQDFMLHAAPVTRRQRQRGGGGVDMEEYARRMTSTRCDGDHITLQALCDALKVNINVVKWTRDDGWYPRTVTSATSN-----------------DAAAAXXXXAAVAEEPRRPSQSVFVADTLRPRAVSSLDARARDLQ--LQGRTLWLSLHGEAHFRSLR 468
            R L LH +SHN   ++ F++     TR   Q GG GVD+  Y   M+ +  DGDH+TLQALCD LK+ I +VK          T    TS+                 D  +       + ++    S+++++++ ++PR +  +D R +D+Q  ++GR +WLS  G+AHFR LR
Sbjct:  187 RKLVLHAISHNPECYRHFLVVPGRRTRSSSQEGGTGVDLTHYLHTMSKSSTDGDHVTLQALCDVLKITIRIVKPVTHHSSTQSTSYDGTSDYLSDDSSSTFSSNPPVLDPLSLSTGVFPIIDKCSSFSRNIYISEEMQPRRLERIDRRIQDVQNLVRGRLVWLSHVGDAHFRYLR 361          
BLAST of mRNA_Ecto-sp13_S_contig19439.6243.1 vs. uniprot
Match: A0A7S1CKW7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CKW7_9STRA)

HSP 1 Score: 95.9 bits (237), Expect = 5.890e-20
Identity = 64/172 (37.21%), Postives = 86/172 (50.00%), Query Frame = 1
Query:    1 RLLALHCVSHNQNAFQDFMLHAAPVTRRQRQRGGGGVDMEEYARRMTSTRCDGDHITLQALCDALKVNINVVKWTRDDGWYPRTVTSATSNDAAAAXXXXAAVAEEPRRPSQSVFVADTLRPRAVS-SLDARARD----LQLQGRTLWLSLHGEAHFRSLRVRDPVTEAEAA 501
            R L +  + ++  A+Q F+LHA   TRRQ+  GG  VD E Y  RM+  RCDGDH+TLQAL DA    +NVVKWT   G                                + V+VA  +RPR +   +  R+ D    +   GR++WLSL+GEAH+RSL +   V  A  A
Sbjct:  169 RRLVIRTMRNSVGAYQMFLLHAHARTRRQQGIGGVSVDFERYLSRMSEERCDGDHVTLQALADATGCELNVVKWTDGAGGE-----------------------------GEGVYVAQPVRPRQLRRKVCPRSADGSPLVNGSGRSVWLSLYGEAHYRSLCLAPGVAGAGGA 311          
BLAST of mRNA_Ecto-sp13_S_contig19439.6243.1 vs. uniprot
Match: A0A7S0CDU1_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0CDU1_9STRA)

HSP 1 Score: 94.4 bits (233), Expect = 1.940e-19
Identity = 74/216 (34.26%), Postives = 100/216 (46.30%), Query Frame = 1
Query:    1 RLLALHCVSHNQNAFQDFMLHAAPV-TRRQRQRGGGGVDMEEYARRMTSTRCDGDHITLQALCDALKVNINVVKWTR----------------DDGWYPRTVT--------------------------------------SATSNDAAAAXXXXAAVAEEPRRPSQSVFVADTLRPRAVSSLDARARDLQ--LQGRTLWLSLH---GEAHFRSLR 468
            R LALH +SHN + +QDF+  A    TR Q   GG GVDM+ Y   M+  +CDGD ITLQALCDALK+ I VVK  +                DD  Y R +                                       S+TS    +       + E P  P   + V++ +RPR +S +D+R +++Q  ++GR +WLS H   GEAHFR LR
Sbjct:  222 RRLALHTISHNPHMYQDFLTTAGGRRTRSQSTTGGRGVDMKSYLSSMSDPKCDGDAITLQALCDALKITIRVVKPVKQQGRNNDVYINVYSGNDDEIYRRHLLRLLHERMQFEVTESIASLSDECDSEDDCPSMESTECSISSTSCPFESCSVDNVLLNENPTNPKSYLSVSEEIRPRRLSRIDSRVKEVQSHVRGRLIWLS-HVGPGEAHFRYLR 436          
BLAST of mRNA_Ecto-sp13_S_contig19439.6243.1 vs. uniprot
Match: A0A7S1XTZ1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XTZ1_9STRA)

HSP 1 Score: 93.2 bits (230), Expect = 3.390e-19
Identity = 64/167 (38.32%), Postives = 83/167 (49.70%), Query Frame = 1
Query:    1 RLLALHCVSHNQNAFQDFMLHAAPVTRRQRQRGGGGVDMEEYARRMTSTRCDGDHITLQALCDALKVNINVVKWTR------DDGWYPRTVTSATSNDAAAAXXXXAAVAEEPRRPSQSVFVADTLRPRA-VSSLDARARDLQLQGRTLWLSLHG-EAHFRSLRVRD 477
            R LAL  +  +   +QDFML AAP+TR QR RGG GV M +Y  RM+   CDGDH+TLQALCDAL+V + V++W         D +  R + +                    R     +  +  L PR     L       ++  R LWLS  G EAHFRSLR+ D
Sbjct:  179 RHLALDTIRSDPAHYQDFMLAAAPLTRAQRSRGGKGVRMHDYLSRMSDLGCDGDHLTLQALCDALRVRVRVLRWAPLDIAGGQDHYLERDLLT--------------------RGRKIGLIHSHELHPRERPGDLSPLGEGFEVPLRVLWLSQVGSEAHFRSLRLLD 325          
BLAST of mRNA_Ecto-sp13_S_contig19439.6243.1 vs. uniprot
Match: I2CPN9_NANGC (OTU domain-containing protein (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=I2CPN9_NANGC)

HSP 1 Score: 63.5 bits (153), Expect = 2.920e-9
Identity = 33/72 (45.83%), Postives = 45/72 (62.50%), Query Frame = 1
Query:    1 RLLALHCVSHNQNAFQDFMLHAAPVTRRQRQRGGGGVDMEEYARRMTSTRCDGDHITLQALCDALKVNINVV 216
            R LAL+ ++ ++  F+ FML   P TRRQ +  G  VD   Y  +M+  R DGDH+TLQAL DAL+  I V+
Sbjct:  114 RQLALYVIATHEAHFRSFMLPPNPRTRRQNRTAGESVDFSRYLEKMSDPRTDGDHLTLQALADALQCPIRVL 185          
BLAST of mRNA_Ecto-sp13_S_contig19439.6243.1 vs. uniprot
Match: A0A4D9D067_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D067_9STRA)

HSP 1 Score: 61.6 bits (148), Expect = 5.430e-8
Identity = 49/143 (34.27%), Postives = 65/143 (45.45%), Query Frame = 1
Query:   58 LHAAPV--TRRQRQRGGGGVDMEEYARRMTSTRCDGDHITLQALCDALKVNINVVKWTRDDGWYPRTVTSATSNDAAAAXXXXAAVAEEPRRPSQSVFVADTLRPRAVSSLDARARDLQLQGRTLWLSLHGEAHFRSLRVRDP 480
            LHA P   TRRQ +  G  VD   Y  +M+  R DGDH+TLQAL DAL+  I V+         P  +   T           +++   P           +L P  +  L+     L++  R LWL+L GEAHFRSL    P
Sbjct:  126 LHAPPNPRTRRQNRTAGESVDFSRYLEKMSDPRTDGDHLTLQALADALQCPIRVLSLV------PAPLAEKTLAHCIKTTMVLSSLLPGP----------PSLPPSPLPPLER----LRVPRRELWLTLRGEAHFRSLLPSPP 248          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig19439.6243.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
A0A6H5L6K9_9PHAE7.730e-9796.39Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FVY3_ECTSI6.880e-9694.01Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S1C001_9STRA3.190e-2032.57Hypothetical protein n=3 Tax=Corethron hystrix Tax... [more]
A0A7S1CKW7_9STRA5.890e-2037.21Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
A0A7S0CDU1_9STRA1.940e-1934.26Hypothetical protein n=1 Tax=Proboscia inermis Tax... [more]
A0A7S1XTZ1_9STRA3.390e-1938.32Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
I2CPN9_NANGC2.920e-945.83OTU domain-containing protein (Fragment) n=1 Tax=N... [more]
A0A4D9D067_9STRA5.430e-834.27Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig19439contigEcto-sp13_S_contig19439:1689..3278 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score317.0
Seed ortholog evalue5.2e-84
Seed eggNOG ortholog2880.D7FVY3
Model size504
KEGG koko:K12813,ko:K17586
KEGG Pathwayko03040,map03040
Hectar predicted targeting categoryother localisation
GOsGO:0000228,GO:0000785,GO:0000790,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006325,GO:0006338,GO:0006351,GO:0006355,GO:0006357,GO:0006366,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0008623,GO:0009058,GO:0009059,GO:0009889,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0016043,GO:0016070,GO:0016071,GO:0016590,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019899,GO:0019904,GO:0031010,GO:0031323,GO:0031326,GO:0031974,GO:0031981,GO:0032774,GO:0032991,GO:0034641,GO:0034645,GO:0034654,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0046483,GO:0050789,GO:0050794,GO:0051171,GO:0051252,GO:0051276,GO:0060255,GO:0065007,GO:0070013,GO:0070063,GO:0070603,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:0097659,GO:1901360,GO:1901362,GO:1901576,GO:1902494,GO:1903506,GO:1904949,GO:2000112,GO:2001141
Exons3
EggNOG free text desc.DNA topoisomerase binding
EggNOG OGsKOG4430@1,KOG4430@2759
EC3.6.4.13
Cds size501
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01009,ko03041
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462986.4760194-CDS-Ecto-sp13_S_contig19439:1690..19931681462986.4760194-CDS-Ecto-sp13_S_contig19439:1690..1993Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19439 1691..1993 -
1681462986.4886024-CDS-Ecto-sp13_S_contig19439:2410..25151681462986.4886024-CDS-Ecto-sp13_S_contig19439:2410..2515Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19439 2411..2515 -
1681462986.5025358-CDS-Ecto-sp13_S_contig19439:3185..32781681462986.5025358-CDS-Ecto-sp13_S_contig19439:3185..3278Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19439 3186..3278 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig19439.6243.1prot_Ecto-sp13_S_contig19439.6243.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig19439 1691..3278 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig19439.6243.1

>prot_Ecto-sp13_S_contig19439.6243.1 ID=prot_Ecto-sp13_S_contig19439.6243.1|Name=mRNA_Ecto-sp13_S_contig19439.6243.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=167bp
RLLALHCVSHNQNAFQDFMLHAAPVTRRQRQRGGGGVDMEEYARRMTSTR
CDGDHITLQALCDALKVNINVVKWTRDDGWYPRTVTSATSNDAAAASNPP
AAVAEEPRRPSQSVFVADTLRPRAVSSLDARARDLQLQGRTLWLSLHGEA
HFRSLRVRDPVTEAEAA
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mRNA from alignment at Ecto-sp13_S_contig19439:1689..3278-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig19439.6243.1 ID=mRNA_Ecto-sp13_S_contig19439.6243.1|Name=mRNA_Ecto-sp13_S_contig19439.6243.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1590bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19439:1689..3278- (Ectocarpus species13 EcNAP12_S_4_19m)
AGGTTGCTGGCCCTGCACTGCGTCTCCCACAACCAGAACGCCTTCCAGGA CTTCATGCTGCATGCGGCACCGGTCACCCGTCGACAGCGACAGGTGATAG AGTTTCGTCGTTCGTTTATCTCGCAGAGCGACGGTGATATTACGGGGGTG GTGATGACGACGAGGGTGCCGCCGTACAGCTTCGATCCGCGCACATGCCA TCTCTCGGCGGTGCCGACGGGATATTTCTCGTTTTCATGGTAGACTCGCG GCGTTCCAAATGGTGTCGGTGGTCTCCGAGCCGGACCTTTTGAGTGGTTT GTTCCAAGGCCTTATCAGCAGGTCTCTGTCAATGTCGTACATACGTGTAT CGCCTCACGGTTTTCCCGTCATGGCACACGCGCTTCGATTCTTCACGCTA GCCATTCTACCGTTCTCCGGAGCACTCTCGACGAACGTCTACTTTTGGTC AACGGTATTAACGCCCTCCGAATGTGGTCAATCCGGTCAGCTGTGGTCGT GGACGCGTTGGCGGCTTCTTGCCTGGACGTGACCCACAAGAGACAGGTTG CAGAGCAGGCTGTTGGCTGCCGTAGCGGATCGGCGATATGCCTGCGTGAT GGCCGTATGAACTGCTGCTATCACCATCGTTTGTTGTCCTGCAAGGCGCT TGCGCGCGTTCTCGCTTTTTTCCACGATGCCCCCAAGAATCATTTTCGTG GTGCATCGTCGGTTTCGGGAAGAGTAACGACCGGCGTCTGTCGTGTGGTG GCGTGATGTTCAGCGCGGCGGCGGTGGTGTGGACATGGAAGAATACGCCC GACGAATGACCAGCACGCGCTGCGACGGGGATCACATCACTTTACAAGCG CTCTGCGACGCCCTTAAGGTCAGCTAGCGGGATGGGTAGGGTCAGATGTT GTAGTTTGGCGAGACCGGGGTTTAGAAAAGAGCTAGGGAACTGTGTTTTG TCAGTACGTGAGCGTGCACCGTGTGGTGCGGCGCAGGAAAATTGCCGTCG ACAACTGGACGTGGTTGCTGGTGGCGCGGTAGCCTGTTGCCACAAATCCT GTGTCTTAGTTCCGCGTTCTTTAGGCTGTGGCATCCATGTCGACAAGACC AAAAGTGTGTGCGGGTACACATGTGACGATGCGGTCTATGTATATTCCAT TACCACCGTGTCCCCACCTTGTGATTTTTGGAAATTCCTGGCATTTTCTG TTTACACTCTGCTGTGATAAGCAATCGCCTGACCTCAGATGGACCTCCCT CCCCCACCCGGTCTCCTCACCGTGCGACCCTTCAGGTGAACATCAACGTC GTAAAATGGACCAGGGACGATGGCTGGTACCCGCGAACGGTGACTAGCGC TACTAGCAACGACGCGGCGGCCGCCAGCAACCCTCCAGCGGCGGTCGCAG AAGAACCACGGCGCCCCAGCCAGAGCGTGTTCGTGGCGGACACGCTCCGC CCGCGGGCGGTTTCCTCCCTGGACGCCCGCGCCCGCGACTTGCAGCTGCA GGGGCGCACCCTGTGGCTGTCGCTCCACGGCGAGGCTCATTTCCGGAGCC TGCGGGTGCGGGACCCCGTAACGGAGGCGGAGGCCGCTGC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig19439:1689..3278-

>mRNA_Ecto-sp13_S_contig19439.6243.1 ID=mRNA_Ecto-sp13_S_contig19439.6243.1|Name=mRNA_Ecto-sp13_S_contig19439.6243.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=501bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19439:1689..3278- (Ectocarpus species13 EcNAP12_S_4_19m)
AGGTTGCTGGCCCTGCACTGCGTCTCCCACAACCAGAACGCCTTCCAGGA
CTTCATGCTGCATGCGGCACCGGTCACCCGTCGACAGCGACAGCGCGGCG
GCGGTGGTGTGGACATGGAAGAATACGCCCGACGAATGACCAGCACGCGC
TGCGACGGGGATCACATCACTTTACAAGCGCTCTGCGACGCCCTTAAGGT
GAACATCAACGTCGTAAAATGGACCAGGGACGATGGCTGGTACCCGCGAA
CGGTGACTAGCGCTACTAGCAACGACGCGGCGGCCGCCAGCAACCCTCCA
GCGGCGGTCGCAGAAGAACCACGGCGCCCCAGCCAGAGCGTGTTCGTGGC
GGACACGCTCCGCCCGCGGGCGGTTTCCTCCCTGGACGCCCGCGCCCGCG
ACTTGCAGCTGCAGGGGCGCACCCTGTGGCTGTCGCTCCACGGCGAGGCT
CATTTCCGGAGCCTGCGGGTGCGGGACCCCGTAACGGAGGCGGAGGCCGC
T
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