mRNA_Ecto-sp13_S_contig19439.6242.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig19439.6242.1
Unique NamemRNA_Ecto-sp13_S_contig19439.6242.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig19439.6242.1 vs. uniprot
Match: A0A6H5L6K9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6K9_9PHAE)

HSP 1 Score: 119 bits (297), Expect = 1.030e-29
Identity = 51/53 (96.23%), Postives = 51/53 (96.23%), Query Frame = 1 
Query:    1 IQDDGGEPEDCSICMCPVTGDEDQASLDKCVHAFHFTCIVKWGETTNQCPMCK 159
            IQDDGGE EDCSICMCPVTGDEDQASLDKCVHAFHFTCIVKWG TTNQCPMCK
Sbjct:  560 IQDDGGELEDCSICMCPVTGDEDQASLDKCVHAFHFTCIVKWGVTTNQCPMCK 612
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BLAST of mRNA_Ecto-sp13_S_contig19439.6242.1 vs. uniprot
Match: D7FVY3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVY3_ECTSI)

HSP 1 Score: 117 bits (293), Expect = 3.570e-29
Identity = 50/52 (96.15%), Postives = 50/52 (96.15%), Query Frame = 1 
Query:    4 QDDGGEPEDCSICMCPVTGDEDQASLDKCVHAFHFTCIVKWGETTNQCPMCK 159
            QDD GE EDCSICMCPVTGDEDQASLDKCVHAFHFTCIVKWGETTNQCPMCK
Sbjct:  592 QDDEGEAEDCSICMCPVTGDEDQASLDKCVHAFHFTCIVKWGETTNQCPMCK 643
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BLAST of mRNA_Ecto-sp13_S_contig19439.6242.1 vs. uniprot
Match: A0A6G0XV56_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XV56_9STRA)

HSP 1 Score: 57.4 bits (137), Expect = 4.640e-8
Identity = 27/51 (52.94%), Postives = 33/51 (64.71%), Query Frame = 1 
Query:   10 DGGEPED-CSICMCPVTGDEDQASLDKCVHAFHFTCIVKWGETTNQCPMCK 159
            +G + ED C IC+  V  D  Q  L KCVH FHF CI++W + TN CPMCK
Sbjct:   37 EGEDSEDMCCICLDNVELDT-QGFLLKCVHTFHFDCILQWAKVTNLCPMCK 86
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BLAST of mRNA_Ecto-sp13_S_contig19439.6242.1 vs. uniprot
Match: A0A7S3XKA5_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XKA5_HETAK)

HSP 1 Score: 54.3 bits (129), Expect = 1.860e-7
Identity = 25/52 (48.08%), Postives = 31/52 (59.62%), Query Frame = 1 
Query:   13 GGEPED---CSICMCPVTGDEDQASLDKCVHAFHFTCIVKWGETTNQCPMCK 159
            GG+ ED   CSIC C    + D  +   C HAF F+CI KW +T N CP+CK
Sbjct:   46 GGDAEDQIICSICFC----EPDLKATIPCNHAFCFSCIHKWSQTENSCPLCK 93
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BLAST of mRNA_Ecto-sp13_S_contig19439.6242.1 vs. uniprot
Match: A0A078ADU1_STYLE (Ring u-box protein n=1 Tax=Stylonychia lemnae TaxID=5949 RepID=A0A078ADU1_STYLE)

HSP 1 Score: 54.7 bits (130), Expect = 4.190e-7
Identity = 22/44 (50.00%), Postives = 29/44 (65.91%), Query Frame = 1 
Query:   31 CSICMCPVTGDEDQASLDKCVHAFHFTCIVKWG-ETTNQCPMCK 159
            C+IC C +  D DQASL+ C+H F F CI +W  +  N CP+CK
Sbjct:  283 CTICQCEME-DNDQASLESCIHLFCFVCIKEWATKAENTCPLCK 325
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BLAST of mRNA_Ecto-sp13_S_contig19439.6242.1 vs. uniprot
Match: A0A7S2KPG2_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2KPG2_9STRA)

HSP 1 Score: 54.3 bits (129), Expect = 5.590e-7
Identity = 23/50 (46.00%), Postives = 29/50 (58.00%), Query Frame = 1 
Query:   10 DGGEPEDCSICMCPVTGDEDQASLDKCVHAFHFTCIVKWGETTNQCPMCK 159
            D    + C IC+  V   E++A +D C H F FTCI KW E  N CP+CK
Sbjct:  151 DADTDKSCCICL-EVPTQENEARVDNCEHIFCFTCIEKWSERENTCPLCK 199
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BLAST of mRNA_Ecto-sp13_S_contig19439.6242.1 vs. uniprot
Match: A0A6J1ES83_CUCMO (uncharacterized protein LOC111435504 n=1 Tax=Cucurbita moschata TaxID=3662 RepID=A0A6J1ES83_CUCMO)

HSP 1 Score: 53.5 bits (127), Expect = 9.410e-7
Identity = 24/53 (45.28%), Postives = 31/53 (58.49%), Query Frame = 1 
Query:   10 DGGEPE---DCSICMCPVTGDEDQASLDKCVHAFHFTCIVKWGETTNQCPMCK 159
            DG  PE   DCS+C C   G E +     C H FH +CI+KW + TN CP+C+
Sbjct:  230 DGFRPEEARDCSVC-CDELGGETEVRRLPCGHVFHKSCILKWLQLTNSCPLCR 281
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BLAST of mRNA_Ecto-sp13_S_contig19439.6242.1 vs. uniprot
Match: A0A1Z5JEA1_FISSO (RING-type domain-containing protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JEA1_FISSO)

HSP 1 Score: 53.1 bits (126), Expect = 1.440e-6
Identity = 22/43 (51.16%), Postives = 27/43 (62.79%), Query Frame = 1 
Query:   31 CSICMCPVTGDEDQASLDKCVHAFHFTCIVKWGETTNQCPMCK 159
            C+IC+C    +E  A LD C H F F+CI KW E  N CP+CK
Sbjct:  233 CTICLCEPDKEEVSA-LDGCNHFFCFSCIEKWSERENSCPLCK 274
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BLAST of mRNA_Ecto-sp13_S_contig19439.6242.1 vs. uniprot
Match: A0A812RED2_9DINO (ATL28 protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812RED2_9DINO)

HSP 1 Score: 52.8 bits (125), Expect = 1.960e-6
Identity = 19/56 (33.93%), Postives = 30/56 (53.57%), Query Frame = 1 
Query:    1 IQDDGGEPEDCSICMCPVTGDEDQASLDKCV---HAFHFTCIVKWGETTNQCPMCK 159
            ++D+GG P+ CSIC+   + D+    +  C    H FH  C+  W  T   CP+C+
Sbjct:  325 VEDEGGYPKSCSICLVDFSADDTDIVITPCSGQRHIFHSACLATWFRTAQTCPLCR 380
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BLAST of mRNA_Ecto-sp13_S_contig19439.6242.1 vs. uniprot
Match: A0A812TVE2_SYMMI (AFC2 protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812TVE2_SYMMI)

HSP 1 Score: 52.8 bits (125), Expect = 2.010e-6
Identity = 19/56 (33.93%), Postives = 30/56 (53.57%), Query Frame = 1 
Query:    1 IQDDGGEPEDCSICMCPVTGDEDQASLDKCV---HAFHFTCIVKWGETTNQCPMCK 159
            ++D+GG P+ CSIC+   + D+    +  C    H FH  C+  W  T   CP+C+
Sbjct:  873 VEDEGGYPKSCSICLVDFSADDTDIVITPCSGQRHIFHSACLATWFRTAQTCPLCR 928
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig19439.6242.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L6K9_9PHAE1.030e-2996.23Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FVY3_ECTSI3.570e-2996.15Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6G0XV56_9STRA4.640e-852.94Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A7S3XKA5_HETAK1.860e-748.08Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A078ADU1_STYLE4.190e-750.00Ring u-box protein n=1 Tax=Stylonychia lemnae TaxI... [more]
A0A7S2KPG2_9STRA5.590e-746.00Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
A0A6J1ES83_CUCMO9.410e-745.28uncharacterized protein LOC111435504 n=1 Tax=Cucur... [more]
A0A1Z5JEA1_FISSO1.440e-651.16RING-type domain-containing protein n=2 Tax=Fistul... [more]
A0A812RED2_9DINO1.960e-633.93ATL28 protein n=1 Tax=Symbiodinium sp. KB8 TaxID=2... [more]
A0A812TVE2_SYMMI2.010e-633.93AFC2 protein n=1 Tax=Symbiodinium microadriaticum ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig19439contigEcto-sp13_S_contig19439:623..811 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score117.5
Seed ortholog evalue2.3e-24
Seed eggNOG ortholog2880.D7FVY3
Model size189
KEGG koko:K12813,ko:K17586
KEGG Pathwayko03040,map03040
Hectar predicted targeting categoryother localisation
GOsGO:0000228,GO:0000785,GO:0000790,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006325,GO:0006338,GO:0006351,GO:0006355,GO:0006357,GO:0006366,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0008623,GO:0009058,GO:0009059,GO:0009889,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0016043,GO:0016070,GO:0016071,GO:0016590,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019899,GO:0019904,GO:0031010,GO:0031323,GO:0031326,GO:0031974,GO:0031981,GO:0032774,GO:0032991,GO:0034641,GO:0034645,GO:0034654,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0046483,GO:0050789,GO:0050794,GO:0051171,GO:0051252,GO:0051276,GO:0060255,GO:0065007,GO:0070013,GO:0070063,GO:0070603,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:0097659,GO:1901360,GO:1901362,GO:1901576,GO:1902494,GO:1903506,GO:1904949,GO:2000112,GO:2001141
Exons1
EggNOG free text desc.DNA topoisomerase binding
EggNOG OGsKOG4430@1,KOG4430@2759
EC3.6.4.13
Cds size189
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01009,ko03041
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462986.4437551-CDS-Ecto-sp13_S_contig19439:622..8111681462986.4437551-CDS-Ecto-sp13_S_contig19439:622..811Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19439 623..811 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig19439.6242.1prot_Ecto-sp13_S_contig19439.6242.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig19439 623..811 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig19439.6242.1

>prot_Ecto-sp13_S_contig19439.6242.1 ID=prot_Ecto-sp13_S_contig19439.6242.1|Name=mRNA_Ecto-sp13_S_contig19439.6242.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=63bp
IQDDGGEPEDCSICMCPVTGDEDQASLDKCVHAFHFTCIVKWGETTNQCP
MCKVLDTPPPPH*
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mRNA from alignment at Ecto-sp13_S_contig19439:623..811-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig19439.6242.1 ID=mRNA_Ecto-sp13_S_contig19439.6242.1|Name=mRNA_Ecto-sp13_S_contig19439.6242.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=189bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19439:623..811- (Ectocarpus species13 EcNAP12_S_4_19m)
ATCCAGGACGACGGGGGGGAGCCGGAGGACTGCTCCATCTGCATGTGCCC
CGTGACCGGGGACGAGGACCAAGCGTCTCTCGACAAGTGCGTCCACGCCT
TCCACTTCACGTGCATCGTCAAGTGGGGCGAGACGACCAACCAGTGCCCC
ATGTGCAAGGTACTTGATACGCCGCCGCCACCGCACTAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig19439:623..811-

>mRNA_Ecto-sp13_S_contig19439.6242.1 ID=mRNA_Ecto-sp13_S_contig19439.6242.1|Name=mRNA_Ecto-sp13_S_contig19439.6242.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=189bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19439:623..811- (Ectocarpus species13 EcNAP12_S_4_19m)
ATCCAGGACGACGGGGGGGAGCCGGAGGACTGCTCCATCTGCATGTGCCC
CGTGACCGGGGACGAGGACCAAGCGTCTCTCGACAAGTGCGTCCACGCCT
TCCACTTCACGTGCATCGTCAAGTGGGGCGAGACGACCAACCAGTGCCCC
ATGTGCAAGGTACTTGATACGCCGCCGCCACCGCACTAG
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