mRNA_Ecto-sp13_S_contig1943.6239.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig1943.6239.1 vs. uniprot
Match: D7G8J5_ECTSI (HIT-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G8J5_ECTSI) HSP 1 Score: 369 bits (946), Expect = 7.130e-129 Identity = 189/191 (98.95%), Postives = 190/191 (99.48%), Query Frame = 1
Query: 1 MSQSKRKAWDATVQASGHVPTRTKTKRASGRTVVLSKSMRVVDEETRNQVKDARLEALEADNYTEDHGGEQDDEFALDEDDERGDRPRGRSRAGKAPGNKSKNKGEKDPWKERKFKSLHQVLYELTNELSAYPGGATAVSIEAPVSKHPPRAFCSVCGYHGLYTCTRCGSRFCSSKCCEQHKETRCLKFAS 573
MSQSKRKAWDATVQASGHVPTRTKTKRASGRTVVLSKSMRVVDEETRNQVKDARLEALEADNYTEDHGGEQDDEFALDEDDERGDRPRGRSRAGKAPGNK+KNKGEKDPWKERKFKSLHQVLYELTNELSAYPGGATAVSIEAPVSKHPPRAFCSVCGYHGLYTCTRCGSRFCSSKC EQHKETRCLKFAS
Sbjct: 1 MSQSKRKAWDATVQASGHVPTRTKTKRASGRTVVLSKSMRVVDEETRNQVKDARLEALEADNYTEDHGGEQDDEFALDEDDERGDRPRGRSRAGKAPGNKNKNKGEKDPWKERKFKSLHQVLYELTNELSAYPGGATAVSIEAPVSKHPPRAFCSVCGYHGLYTCTRCGSRFCSSKCYEQHKETRCLKFAS 191
BLAST of mRNA_Ecto-sp13_S_contig1943.6239.1 vs. uniprot
Match: W7TJ72_9STRA (Zinc finger, HIT-type n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TJ72_9STRA) HSP 1 Score: 144 bits (362), Expect = 4.030e-40 Identity = 96/194 (49.48%), Postives = 117/194 (60.31%), Query Frame = 1
Query: 1 MSQSKRKAWDATVQASGHVPTRTK---TKRASGRTVVLSKSMRVVDEETRNQVKDARLEALEADNYTEDHGGEQDDEFALDEDDERGDRPRGRSRAGKAPGNKSKNKGEKDPWKERKFKSLHQVLYELTNELSAYPGGATAVSIEAPVSKHPPRAFCSVCGYHGLYTCTRCGSRFCSSKCCEQHKETRCLKFAS 573
MS +KR AWD + +G +TK KR+SGR VLSK+M+VVDEETR +V+DARLEALEADNY E+ G E D+ + D E RP+ + A + + + + K L Q +YE E S P TA A S P R FCSVCGY GLYTCTRCG R+CSSKC E HKETRCLKFA+
Sbjct: 1 MSTNKRSAWDEAMGLAGAGIKQTKKKGAKRSSGRQAVLSKAMQVVDEETRREVRDARLEALEADNYVENAGEEMDEAYV---DSEEEGRPKVKREAKRKRSMAQRQQMANKLISSFRKKPLAQWVYEAGYERSNGPNYLTAA---AQPSSLPTRCFCSVCGYWGLYTCTRCGMRYCSSKCAETHKETRCLKFAT 188
BLAST of mRNA_Ecto-sp13_S_contig1943.6239.1 vs. uniprot
Match: A0A485KXM9_9STRA (Aste57867_13128 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KXM9_9STRA) HSP 1 Score: 134 bits (338), Expect = 1.820e-36 Identity = 88/187 (47.06%), Postives = 118/187 (63.10%), Query Frame = 1
Query: 16 RKAWDATVQASGHV-PTRTKTKRASGRTVVLSKSMRVVDEETRNQVKDARLEALEADNYTEDHGGEQDDEFALDEDDERGDRPRGRSRAGKAPGNKSKNKGEKDPWKERKFKSLHQVLYELTNELSAYPGGATAVSIEAPV--SKHPPRAFCSVCGYHGLYTCTRCGSRFCSSKCCEQHKETRCLKF 567
++ WD T+ +SG V P T KR SGRTV +SK+M+ VDEETR QV++ARL+ALEADNY E G++D F LD+D+ + + + +++ KA +G RK KSL Q ++E +++ P +T + A V S HPPR FC VCG YTC RCGSRFCS +C +QHKET CLKF
Sbjct: 7 KRQWDQTMASSGLVAPGHTPKKRFSGRTVKISKAMKHVDEETRQQVRNARLDALEADNYVEATEGDED-MFILDDDEPKKPKSKAKAKQPKAAPLVPTARGRHRIV--RKVKSLRQWIFEECGDVTNDPLSSTPTYLSAAVKPSTHPPRHFCCVCGLFSSYTCGRCGSRFCSVRCGDQHKETGCLKF 190
BLAST of mRNA_Ecto-sp13_S_contig1943.6239.1 vs. uniprot
Match: A0A7S1U8Q5_9STRA (Hypothetical protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U8Q5_9STRA) HSP 1 Score: 127 bits (318), Expect = 2.120e-33 Identity = 81/196 (41.33%), Postives = 115/196 (58.67%), Query Frame = 1
Query: 16 RKAWDATVQASGHVPTRTKTKRASGRTVVLSKSMRVVDEETRNQVKDARLEALEADNYTEDHGGEQDDEFALDEDDERGDRPRGRSRAGKAPGN-------KSKNKGEKDPWKERKFKSLHQVLYELTNELSAYPGGATAVSIEAPV---SKHPPRAFCSVCGYHGLYTCTRCGSRFCSSKCCEQHKETRCLKFAS 573
RK W+ T++A G ++R+S R +S+ +RVVD ETR V++ARL+ALEADNY E+H QDD + + +E P+ + K+K+ G K WK+RK+K L QV+YE + + GA +V+ + S+ PPRAFCSVCGY G + C RCG R+C +C E HKETRC+KF +
Sbjct: 9 RKGWNETMKAMGAKAPGGNSRRSSSRIATVSRDLRVVDAETREHVRNARLDALEADNYMEEHVA-QDDAYEEVDSEEEAAEPKAKXXXXXXXXXXXXXTTAKAKDPGHK--WKKRKYKPLRQVVYEQGYDAT----GAASVNHSSAAMGPSRFPPRAFCSVCGYFGTFKCPRCGMRYCRRRCQEAHKETRCMKFGT 197
BLAST of mRNA_Ecto-sp13_S_contig1943.6239.1 vs. uniprot
Match: W4G490_9STRA (HIT-type domain-containing protein n=7 Tax=Aphanomyces astaci TaxID=112090 RepID=W4G490_9STRA) HSP 1 Score: 122 bits (307), Expect = 8.280e-32 Identity = 87/195 (44.62%), Postives = 109/195 (55.90%), Query Frame = 1
Query: 16 RKAWDATVQASG-HVPTRTKT--KRASGRTVVLSKSMRVVDEETRNQVKDARLEALEADNYTEDHGGEQDDEFALDEDDERGDRPRGRSRAGKAPGNKSKNKGEKDPWKE--------RKFKSLHQVLYELTNELSAYPGGATAVSIEAPVSKHPPRAFCSVCGYHGLYTCTRCGSRFCSSKCCEQHKETRCLKF 567
++ WD T+ +SG VP K KR SGRTV +SK+M+ VDEETR QV++ARL+ALEADNY E G +D F LD+DD+ A K KSK K K + RK KSL Q+++E + V+ +K PPR FC VCG YTC RCGS+FC +C QHKET CLKF
Sbjct: 7 KRQWDQTMASSGLAVPGSAKVSRKRFSGRTVKISKAMKHVDEETRRQVRNARLDALEADNYMESTDGADEDMFVLDDDDD----------AKKPTKPKSKAKANKHQVPQALGRHRMVRKVKSLRQLIFEECGD-GMSSTDINYVTAAVKPAKTPPRHFCCVCGLLSSYTCGRCGSKFCCVRCGNQHKETGCLKF 190
BLAST of mRNA_Ecto-sp13_S_contig1943.6239.1 vs. uniprot
Match: A0A024TKA6_9STRA (HIT-type domain-containing protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TKA6_9STRA) HSP 1 Score: 122 bits (306), Expect = 1.340e-31 Identity = 86/201 (42.79%), Postives = 119/201 (59.20%), Query Frame = 1
Query: 16 RKAWDATVQASG-------HVPTRTKTKRASGRTVVLSKSMRVVDEETRNQVKDARLEALEADNYTEDHGGEQDDEFALDEDDERGDRPRGRSRAGKAPGNKSKNKGEKD-PWKE------RKFKSLHQVLYELTNELSAYPGGATAVS-IEAPVS--KHPPRAFCSVCGYHGLYTCTRCGSRFCSSKCCEQHKETRCLKF 567
++ WD T+ +SG HVP KR SGRT+ +SK+M+ VDEETR QV++ARL+ALEADNY E+ +D F LDEDD+ ++ P +K+K KG P + RK KSL +++E +++ PG + ++ + A V K PPR FC VCG +Y+C RCGS+FC +C QHKET CLKF
Sbjct: 7 KRQWDQTMASSGVVAPGSGHVPR----KRFSGRTMKISKTMKHVDEETRRQVRNARLDALEADNYMENTDDGDEDMFVLDEDDD------AVAKKASKPKSKAKAKGTLHVPQAQGRHRVVRKIKSLRHLIFEECGDVA--PGNDSVINYVTAAVKPPKTPPRHFCCVCGLLSVYSCGRCGSKFCCVRCGNQHKETGCLKF 195
BLAST of mRNA_Ecto-sp13_S_contig1943.6239.1 vs. uniprot
Match: K3X0J0_GLOUD (HIT-type domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X0J0_GLOUD) HSP 1 Score: 119 bits (297), Expect = 3.240e-30 Identity = 84/193 (43.52%), Postives = 112/193 (58.03%), Query Frame = 1
Query: 16 RKAWDATV----QASGHVPTRTKTKRASGRTVVLSKSMRVVDEETRNQVKDARLEALEADNYTEDHGGEQDDEFALDE---DDERGDRPRGRSRAGKAP-GNKSKNKGEKDPWKERKFKSLHQVLYELTNELSAY-PGGATAVSIEAPVSKHPPRAFCSVCGYHGLYTCTRCGSRFCSSKCCEQHKETRCLKF 567
+K W+ T+ A+ KTKR SGRTV LSK+M+ VDEETR V++ARL+ALEADNY D + DD +D+ DD GD P G GK K++ K K+ K KSL Q+++E A P +++ A S P R FC VCG+ +Y+CTRCGSR+C KC ++HKE+ CLKF
Sbjct: 8 KKRWNETILRTTAAAATAKRAAKTKRFSGRTVKLSKAMQHVDEETRTIVRNARLDALEADNYGVDAEADGDDANDVDDMYIDD--GDVPSGAGTPGKDKRARKNRKLATKAKAKKWKVKSLAQLVFEEHGAGDAVDPNMPNYITVAAAASTRPARRFCCVCGFFAVYSCTRCGSRYCRIKCGDEHKESSCLKF 198
BLAST of mRNA_Ecto-sp13_S_contig1943.6239.1 vs. uniprot
Match: A0A067BTG0_SAPPC (HIT-type domain-containing protein n=3 Tax=Saprolegnia TaxID=4769 RepID=A0A067BTG0_SAPPC) HSP 1 Score: 115 bits (288), Expect = 6.470e-29 Identity = 88/199 (44.22%), Postives = 113/199 (56.78%), Query Frame = 1
Query: 4 SQSKRKAWDATVQASGHVPTRTKTKRASGRTVVLSKSMRVVDEETRNQVKDARLEALEADNYTEDHGGEQDDEFALDEDDERGDRPRGRSRA---GKAPGNKSKNKGEKDPWKERKFKSLHQVLYELTNELSAYPG-GATAVSIEAPVSKHPPRAFCSVCGY------HGLYTCTRCGSRFCSSKCCEQHKETRCLKFA 570
S++ ++ WD T+ +SG KR SGR V +SK+M+ VDEETR QV++ARL+ALEADNY E + DDE EDD G + +SRA KAP + G + RK KSL Q+++E E G G V+ + PPR FC VCGY Y C RCGSRFCS KC +QH+ET CLKF+
Sbjct: 3 SKNAKRQWDQTMASSGLALPTAPRKRNSGRAVKISKAMKHVDEETRKQVRNARLDALEADNYVE-PTEDGDDEDLYIEDDAVGPKKSSKSRAKGKAKAPVVPISSSGRRRVV--RKVKSLAQLVFE---ECGTGEGLGPNYVTAAVKPATTPPRKFCVVCGYPFDRTLFSNYACGRCGSRFCSVKCGDQHRETGCLKFS 195
BLAST of mRNA_Ecto-sp13_S_contig1943.6239.1 vs. uniprot
Match: A0A1V9YMM7_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YMM7_9STRA) HSP 1 Score: 112 bits (280), Expect = 1.680e-27 Identity = 89/221 (40.27%), Postives = 118/221 (53.39%), Query Frame = 1
Query: 4 SQSKRKAWDATVQASGHVPTRTKTKRASGRTVVLSKSMRVVDEETRNQVKDARLEALEADNYTEDHGGEQDDEFALDEDDERGDRPRGRSRAGKAPGNKSKNKGEKDPWK-------ERKFKSLHQVLYEL--TNELSAYPGGATAVSIEAPVSKHPPRAFCSVCGY------HGL------------------YTCTRCGSRFCSSKCCEQHKETRCLKF 567
S++ ++ WD T+ +SG + KR SGRTV +SK+M+ VDEETR QV++ARL+ALEADNY E +D++ +++D + +SRA K+K+KG P RK KSL +++E T E + P TA A K PPR FC VCGY H YTC RCGSRFCS +C +QHKET CLKF
Sbjct: 3 SKNAKRQWDQTMASSGLALPQAPRKRYSGRTVKISKAMKHVDEETRKQVRNARLDALEADNYVEPTDDGEDEDLYIEDDSGTPSKKPLKSRA------KAKSKGTVVPVSISGRRRIVRKVKSLAHLIFEECGTGEDTQRPNYITAAVKPA---KTPPRHFCVVCGYPFRYSLHAACTSKTVLRSLTRRTLFSDYTCGRCGSRFCSVRCGDQHKETGCLKF 214
BLAST of mRNA_Ecto-sp13_S_contig1943.6239.1 vs. uniprot
Match: A0A6G0X8S1_9STRA (HIT-type domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0X8S1_9STRA) HSP 1 Score: 111 bits (278), Expect = 1.730e-27 Identity = 75/185 (40.54%), Postives = 107/185 (57.84%), Query Frame = 1
Query: 16 RKAWDATVQASGHV-PTRTKTKRASGRTVVLSKSMRVVDEETRNQVKDARLEALEADNYTEDHGGEQDDEFALDEDDERGDRPRGRSRAGKAPGNKSKNKGEKDPWKERKFKSLHQVLYELTNELSAYPGGATAVSIEAPVSKHPPRAFCSVCGYHGLYTCTRCGSRFCSSKCCEQHKETRCLKF 567
++ WD T+++SG V P + KR SGRTV +SK+M++VDEETR QV++ARL+ALEADNY E + +D F L++ + RK KSL Q+++E + + + +++ P K PPR FC+VCG+ Y C RCGS+FCS +C +QHKET CLKF
Sbjct: 7 KRQWDQTMKSSGLVAPGQAPKKRFSGRTVKISKAMKLVDEETRQQVRNARLDALEADNYVE-QTEDDEDMFVLEDXXXXXXXXXXXXXXXXXXATPVVPQALGRRRIVRKVKSLRQLIFEECGDGESSIPNYISAAVKPP--KEPPRHFCAVCGHFSCYNCGRCGSKFCSVQCGDQHKETGCLKF 188 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1943.6239.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig1943.6239.1 >prot_Ecto-sp13_S_contig1943.6239.1 ID=prot_Ecto-sp13_S_contig1943.6239.1|Name=mRNA_Ecto-sp13_S_contig1943.6239.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=192bp MSQSKRKAWDATVQASGHVPTRTKTKRASGRTVVLSKSMRVVDEETRNQVback to top mRNA from alignment at Ecto-sp13_S_contig1943:11157..13877- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig1943.6239.1 ID=mRNA_Ecto-sp13_S_contig1943.6239.1|Name=mRNA_Ecto-sp13_S_contig1943.6239.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2721bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1943:11157..13877- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1943:11157..13877- >mRNA_Ecto-sp13_S_contig1943.6239.1 ID=mRNA_Ecto-sp13_S_contig1943.6239.1|Name=mRNA_Ecto-sp13_S_contig1943.6239.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=576bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1943:11157..13877- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |