mRNA_Ecto-sp13_S_contig10674.620.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig10674.620.1
Unique NamemRNA_Ecto-sp13_S_contig10674.620.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig10674.620.1 vs. uniprot
Match: A0A2E1WNN8_9ACTN (Uncharacterized protein n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A2E1WNN8_9ACTN)

HSP 1 Score: 59.7 bits (143), Expect = 6.610e-9
Identity = 30/80 (37.50%), Postives = 42/80 (52.50%), Query Frame = 1
Query:    4 EFVEVYDEPLHPTVFENEYVRVLKVDCPMNQDTMYHRHSQDSFFLFFRTAQVGPIALGTTSAQFGREVAIRAFAHPNPSR 243
            E+VEV DEP H   FEN Y+R+  V  P    T+YHRH  D+F++    + V     G T+    +  A  AF  P+ S+
Sbjct:   14 EYVEVRDEPRHRHRFENXYIRLYDVLIPQEDQTLYHRHGLDTFYVMIADSSVEDQTFGETTTSXAQITAGGAFLRPHESQ 93          
BLAST of mRNA_Ecto-sp13_S_contig10674.620.1 vs. uniprot
Match: A0A0G4G5J5_9ALVE (Uncharacterized protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4G5J5_9ALVE)

HSP 1 Score: 58.9 bits (141), Expect = 1.910e-8
Identity = 25/53 (47.17%), Postives = 34/53 (64.15%), Query Frame = 1
Query:    1 PEFVEVYDEPLHPTVFENEYVRVLKVDCPMNQDTMYHRHSQDSFFLFFRTAQV 159
            PE+VEV DEP H T+F+NEY   ++V       T++HRHSQDS F+F     +
Sbjct:   15 PEYVEVSDEPSHHTIFKNEYCIAIRVQFEKGHSTLFHRHSQDSLFVFLANISI 67          
BLAST of mRNA_Ecto-sp13_S_contig10674.620.1 vs. uniprot
Match: A0A0G4EDV6_VITBC (Uncharacterized protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4EDV6_VITBC)

HSP 1 Score: 55.8 bits (133), Expect = 2.510e-7
Identity = 24/53 (45.28%), Postives = 32/53 (60.38%), Query Frame = 1
Query:    1 PEFVEVYDEPLHPTVFENEYVRVLKVDCPMNQDTMYHRHSQDSFFLFFRTAQV 159
            P FVEVYDEP H T  +N+Y   +KV  P    T YHRH +D+ F+F    ++
Sbjct:   43 PPFVEVYDEPRHTTCVKNDYCIAMKVRFPCGDTTWYHRHKEDTVFVFMGNMEI 95          
BLAST of mRNA_Ecto-sp13_S_contig10674.620.1 vs. uniprot
Match: D7FM72_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FM72_ECTSI)

HSP 1 Score: 54.3 bits (129), Expect = 5.200e-7
Identity = 23/24 (95.83%), Postives = 24/24 (100.00%), Query Frame = 1
Query:   88 MNQDTMYHRHSQDSFFLFFRTAQV 159
            MNQDTMYHRHSQDSFFLFFRTAQ+
Sbjct:    1 MNQDTMYHRHSQDSFFLFFRTAQI 24          
BLAST of mRNA_Ecto-sp13_S_contig10674.620.1 vs. uniprot
Match: A0A7C7TBA7_9ACTN (Uncharacterized protein n=2 Tax=Acidimicrobiia TaxID=84992 RepID=A0A7C7TBA7_9ACTN)

HSP 1 Score: 54.3 bits (129), Expect = 6.420e-7
Identity = 27/73 (36.99%), Postives = 40/73 (54.79%), Query Frame = 1
Query:    4 EFVEVYDEPLHPTVFENEYVRVLKVDCPMNQDTMYHRHSQDSFFLFFRTAQVGPIALGTTSAQFGREVAIRAF 222
            E+VEV DEP H   FEN+Y+R+  V  P    T+YHRH  D+F++    + V     G +++   +  A  AF
Sbjct:    5 EYVEVRDEPRHRHRFENDYIRLYDVLIPEGDQTLYHRHDVDTFYVMIADSSVEDRTFGESTSSTAQITAGGAF 77          
BLAST of mRNA_Ecto-sp13_S_contig10674.620.1 vs. uniprot
Match: A0A2E8GIA0_9ACTN (Uncharacterized protein n=2 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A2E8GIA0_9ACTN)

HSP 1 Score: 53.1 bits (126), Expect = 1.680e-6
Identity = 24/62 (38.71%), Postives = 36/62 (58.06%), Query Frame = 1
Query:    4 EFVEVYDEPLHPTVFENEYVRVLKVDCPMNQDTMYHRHSQDSFFLFFRTAQVGPIALGTTSA 189
            E+VEV DEP H   FEN+Y+R+  V  P   +T+YHRH  D+F++    + V     G  ++
Sbjct:    5 EYVEVRDEPRHRHRFENDYIRLYDVLIPKGDETLYHRHGVDTFYVMIVNSSVQDRTYGAATS 66          
BLAST of mRNA_Ecto-sp13_S_contig10674.620.1 vs. uniprot
Match: A0A381REV2_9ZZZZ (Uncharacterized protein n=1 Tax=marine metagenome TaxID=408172 RepID=A0A381REV2_9ZZZZ)

HSP 1 Score: 52.8 bits (125), Expect = 2.340e-6
Identity = 26/73 (35.62%), Postives = 38/73 (52.05%), Query Frame = 1
Query:    4 EFVEVYDEPLHPTVFENEYVRVLKVDCPMNQDTMYHRHSQDSFFLFFRTAQVGPIALGTTSAQFGREVAIRAF 222
            E+V+V DEP H   FEN+Y+R+  V  P    T+YHRH+ D+F++    + V     G  +       A  AF
Sbjct:    5 EYVDVRDEPRHRHRFENDYIRLYDVLIPEGDQTLYHRHNVDTFYVMIANSSVQDQTFGEATCSAAEITAGGAF 77          
BLAST of mRNA_Ecto-sp13_S_contig10674.620.1 vs. uniprot
Match: UPI001EDF32C1 (hypothetical protein n=1 Tax=Pseudomonas sp. MMS21 TM103 TaxID=2886506 RepID=UPI001EDF32C1)

HSP 1 Score: 52.0 bits (123), Expect = 5.710e-6
Identity = 24/53 (45.28%), Postives = 34/53 (64.15%), Query Frame = 1
Query:    1 PEFVEVYDEPLHPTVFENEYVRVLKVDCPMNQDTMYHRHSQDSFFLFFRTAQV 159
            PE+V+V DEP H   FEN+Y RV  V     + ++YHRHSQD+F++     +V
Sbjct:   35 PEWVDVADEPQHFHRFENDYARVYDVRFAAGEKSLYHRHSQDTFYVAVHATKV 87          
BLAST of mRNA_Ecto-sp13_S_contig10674.620.1 vs. uniprot
Match: A0A836C8W9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8W9_9STRA)

HSP 1 Score: 50.1 bits (118), Expect = 2.570e-5
Identity = 22/45 (48.89%), Postives = 28/45 (62.22%), Query Frame = 1
Query:    4 EFVEVYDEPLHPTVFENEYVRVLKVDCPMNQDTMYHRHSQDSFFL 138
            E+VEVYDEP+H   F NEY           +  M+HRHSQDSF++
Sbjct:   13 EYVEVYDEPIHKCQFSNEYAYCYIATINPGESCMWHRHSQDSFYV 57          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10674.620.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
A0A2E1WNN8_9ACTN6.610e-937.50Uncharacterized protein n=1 Tax=Acidimicrobiaceae ... [more]
A0A0G4G5J5_9ALVE1.910e-847.17Uncharacterized protein n=1 Tax=Chromera velia CCM... [more]
A0A0G4EDV6_VITBC2.510e-745.28Uncharacterized protein n=1 Tax=Vitrella brassicaf... [more]
D7FM72_ECTSI5.200e-795.83Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7C7TBA7_9ACTN6.420e-736.99Uncharacterized protein n=2 Tax=Acidimicrobiia Tax... [more]
A0A2E8GIA0_9ACTN1.680e-638.71Uncharacterized protein n=2 Tax=Acidimicrobiaceae ... [more]
A0A381REV2_9ZZZZ2.340e-635.62Uncharacterized protein n=1 Tax=marine metagenome ... [more]
UPI001EDF32C15.710e-645.28hypothetical protein n=1 Tax=Pseudomonas sp. MMS21... [more]
A0A836C8W9_9STRA2.570e-548.89Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig10674contigEcto-sp13_S_contig10674:5338..5580 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size243
Hectar predicted targeting categoryother localisation
Exons1
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-16_004830.1
Cds size243
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462546.0443664-CDS-Ecto-sp13_S_contig10674:5337..55801681462546.0443664-CDS-Ecto-sp13_S_contig10674:5337..5580Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10674 5338..5580 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig10674.620.1prot_Ecto-sp13_S_contig10674.620.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig10674 5338..5580 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig10674.620.1

>prot_Ecto-sp13_S_contig10674.620.1 ID=prot_Ecto-sp13_S_contig10674.620.1|Name=mRNA_Ecto-sp13_S_contig10674.620.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=81bp
PEFVEVYDEPLHPTVFENEYVRVLKVDCPMNQDTMYHRHSQDSFFLFFRT
AQVGPIALGTTSAQFGREVAIRAFAHPNPSR
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mRNA from alignment at Ecto-sp13_S_contig10674:5338..5580+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig10674.620.1 ID=mRNA_Ecto-sp13_S_contig10674.620.1|Name=mRNA_Ecto-sp13_S_contig10674.620.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=243bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10674:5338..5580+ (Ectocarpus species13 EcNAP12_S_4_19m)
CCGGAGTTTGTGGAAGTGTATGACGAACCGCTGCATCCCACCGTGTTTGA GAACGAGTATGTCAGGGTTCTTAAGGTCGACTGCCCCATGAACCAAGACA CGATGTATCATCGGCACAGTCAGGACAGCTTCTTCTTGTTCTTCAGAACC GCCCAGGTTGGACCGATTGCTCTTGGCACAACCAGCGCGCAGTTTGGCAG AGAGGTAGCAATTCGAGCATTTGCACACCCTAACCCTAGCCGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10674:5338..5580+

>mRNA_Ecto-sp13_S_contig10674.620.1 ID=mRNA_Ecto-sp13_S_contig10674.620.1|Name=mRNA_Ecto-sp13_S_contig10674.620.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=243bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10674:5338..5580+ (Ectocarpus species13 EcNAP12_S_4_19m)
CCGGAGTTTGTGGAAGTGTATGACGAACCGCTGCATCCCACCGTGTTTGA
GAACGAGTATGTCAGGGTTCTTAAGGTCGACTGCCCCATGAACCAAGACA
CGATGTATCATCGGCACAGTCAGGACAGCTTCTTCTTGTTCTTCAGAACC
GCCCAGGTTGGACCGATTGCTCTTGGCACAACCAGCGCGCAGTTTGGCAG
AGAGGTAGCAATTCGAGCATTTGCACACCCTAACCCTAGCCGG
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