mRNA_Ecto-sp13_S_contig19293.6184.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig19293.6184.1
Unique NamemRNA_Ecto-sp13_S_contig19293.6184.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig19293.6184.1 vs. uniprot
Match: D7FXA3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXA3_ECTSI)

HSP 1 Score: 416 bits (1069), Expect = 3.510e-146
Identity = 206/225 (91.56%), Postives = 214/225 (95.11%), Query Frame = 1 
Query:    1 QVGFRDDTSYLTAHYGGRSPRRTARVTANGIPRPPEKASPVGCQADPTVKSITPTRGSGPASADVDVSRGETVGVGARKAGEGRFLVRPTLSEQLASIGKAAEDITAGIRRSHGLKPLEGAILTTPSESFLVGKLRCKYPSPVAFFNHKCVYTFHHPFEATRIAMEMFFRDMRSAALDSPRRELRFKIDHPLCHYTKDYSHNDPSHFVLIQFSSGLDAERVLEKI 675
            QVGFRDDTSYLTAHYGGRSPRRT RVT +GIPRPPEKASPVG QADPTVKSI PTRGS PAS  V ++R ET+GVGAR AGEGRFLVRPTLSEQLASIGKAAEDITAGIR+SHGLKPLEGAILTTPSESFLVGKLRCKYPSPVAFFNHKCVYTFHHPFEATRI MEMFFRDMRSAALDSPRRELRFKIDHPLCHYTKDYSH+DPSHFV+IQFSSGLDAERVLEK+
Sbjct:    8 QVGFRDDTSYLTAHYGGRSPRRTTRVTTHGIPRPPEKASPVGSQADPTVKSIAPTRGSRPASTGVVIARRETIGVGARNAGEGRFLVRPTLSEQLASIGKAAEDITAGIRKSHGLKPLEGAILTTPSESFLVGKLRCKYPSPVAFFNHKCVYTFHHPFEATRITMEMFFRDMRSAALDSPRRELRFKIDHPLCHYTKDYSHDDPSHFVVIQFSSGLDAERVLEKV 232
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BLAST of mRNA_Ecto-sp13_S_contig19293.6184.1 vs. uniprot
Match: A0A6H5K4P7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4P7_9PHAE)

HSP 1 Score: 139 bits (351), Expect = 2.390e-39
Identity = 67/72 (93.06%), Postives = 69/72 (95.83%), Query Frame = 1 
Query:  493 MEMFFRDMRSAALDSPRRELRFKIDHPLCHYTKDYSHNDPSHFVLIQFSSGLDAERVLEKIMPLIRRSGGVR 708
            MEMFFRDMRSA LD  RRELRFKIDHPLCHYTKDYSHNDPSHFV+IQFSSGLDA+RVLEKIMPLIRRSGGVR
Sbjct:    1 MEMFFRDMRSAVLDHRRRELRFKIDHPLCHYTKDYSHNDPSHFVVIQFSSGLDADRVLEKIMPLIRRSGGVR 72
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BLAST of mRNA_Ecto-sp13_S_contig19293.6184.1 vs. uniprot
Match: A0A7S2FRD3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FRD3_9STRA)

HSP 1 Score: 129 bits (324), Expect = 2.400e-33
Identity = 70/142 (49.30%), Postives = 91/142 (64.08%), Query Frame = 1 
Query:  259 VRPTLSEQLASIGKAAEDITAGIRRSHGLKPLEGA-----ILTTPSESFLVGKLRCKYPSPVAFFNHKCVYTFHHPFEATRIAMEMFFRDMRSAALDSPRRELRFKIDHPLCHYTK--DYSHNDPSHFVLIQFSSGLDAERV 663
            VRP+LSEQLASIG +A  IT  IR++H L    G      +L  P+ +F VGKL C+YPSPV FF  +C Y F+HP E+ +I MEM++RDMR A L    R LRFKIDH L  +T   DY+ +D +H++ I  +S  DA  V
Sbjct:   43 VRPSLSEQLASIGASAGSITDEIRKTHKLDDHHGTASGKPLLRVPARAFTVGKLECRYPSPVQFFADQCTYIFNHPHESKQITMEMYYRDMRQAVLSEGTRSLRFKIDHLLDKFTTPGDYNPHDRNHYITIGLASVADARAV 184
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BLAST of mRNA_Ecto-sp13_S_contig19293.6184.1 vs. uniprot
Match: A0A6G0WIX3_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WIX3_9STRA)

HSP 1 Score: 94.4 bits (233), Expect = 5.470e-20
Identity = 53/149 (35.57%), Postives = 84/149 (56.38%), Query Frame = 1 
Query:  262 RPTLSEQLASIGKAAEDITAGIRRSHGLKPLEGAI--LTTPSESFLVGKLRCKYPSPVAFFNHKCVYTFHHPFEATRIAMEMFFRDMRSAALDSPRRELRFKIDHPLCHYTKDYSHNDPSHFVLIQFSSGLDAERV---LEKIMPLIRR 693
            RP+LS+QLASIG  AE +   +++      +   +  +  P+   +VG+L CK+PSP+ FF+  C Y F H      IAM M++RDM   +++  R  LRF+I H L  +  DY +++ +H + I F+S  D  RV   L K+  + +R
Sbjct:   71 RPSLSDQLASIGLQAESVARSLKKRTNDDEMTSNVERMRLPTLRMVVGRLECKFPSPIVFFDQLCRYQFVHG--GRDIAMYMYYRDMTDISMEKKRLTLRFRIPHALAQFGADYDYHNQNHAIEIGFASQTDWNRVKAFLSKLQSMQKR 217
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BLAST of mRNA_Ecto-sp13_S_contig19293.6184.1 vs. uniprot
Match: A0A1V9YA22_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YA22_9STRA)

HSP 1 Score: 93.2 bits (230), Expect = 1.560e-19
Identity = 56/146 (38.36%), Postives = 83/146 (56.85%), Query Frame = 1 
Query:  259 VRPTLSEQLASIGKAAEDITAGIRRSHGLKPLEGAILTTPSESFLVGKLRCKYPSPVAFFNHKCVYTFHHPFEATR-IAMEMFFRDMRSAALDSPRRELRFKIDHPLCHYTKDYSHNDPSHFVLIQFSSGLDAERVLEKIMPLIRR 693
            +RP+LSEQLA+IG+ A+ +   + R    +      LT P+ +  VG+L CK+PSPV F +  C Y F     A+R IAM M++RDM     +     L+FKI H L  +  DY H +P+H+V+I F+S  D  RV   ++  + R
Sbjct:   69 MRPSLSEQLATIGQQAQSLVNALSR----EAPASTKLTVPTATMTVGRLECKFPSPVHFEDAVCRYQF---LVASRDIAMYMYYRDMTHVTFEQRSWSLKFKIAHALDQFGSDYDHTNPNHYVVIGFASMSDWRRVQSFLLSKLPR 207
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BLAST of mRNA_Ecto-sp13_S_contig19293.6184.1 vs. uniprot
Match: A0A485KAI9_9STRA (Aste57867_1521 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KAI9_9STRA)

HSP 1 Score: 77.4 bits (189), Expect = 1.370e-13
Identity = 50/131 (38.17%), Postives = 70/131 (53.44%), Query Frame = 1 
Query:  271 LSEQLASIGKAAEDITAGIRRSHGLKPLEGAILTTPSESFLVGKLRCKYPSPVAFFNHKCVYTFHHPFEATRIAMEMFFRDMRSAALDSPRRELRFKIDHPLCHYTK-DYSHNDPSHFVLIQFSSGLDAER 660
            LS+QLASIG +A+ +   + +     PL     T P+   +VG+L CK+PSPV+F  H   Y F H      IAM M+F+DM       P   ++FKI HPL  +   DY H + +H + I F+S  D  R
Sbjct:   81 LSDQLASIGASAQALVDSLSKPTN-DPLS---FTLPTLRLVVGRLECKFPSPVSFSPHLLRYQFLHG--GHDIAMLMYFQDMVDVTFHLPSLSVKFKIPHPLTEFAHGDYDHLNRNHMLHIGFASATDLAR 205
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BLAST of mRNA_Ecto-sp13_S_contig19293.6184.1 vs. uniprot
Match: A0A1W0A1J9_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A1J9_9STRA)

HSP 1 Score: 54.3 bits (129), Expect = 1.020e-5
Identity = 33/91 (36.26%), Postives = 49/91 (53.85%), Query Frame = 1 
Query:  262 RPTLSEQLASIGKAAEDITAGIRRSHGLKPLEGAILTTPSESFLVGKLRCKYPSPVAFFNHKCVYTFHHPFEATRIAMEMFFRDMRSAALD 534
            RP+LS+QLA I    + +   ++R    K +    LT P+ S  VG+L CK+PSPV F +  C Y F     +  IAM M++ DM   + +
Sbjct:   63 RPSLSQQLALISGKTQQLVDTLQR----KDVGSGKLTVPTASMTVGRLECKFPSPVHFEDKVCRYQFMT--SSRDIAMFMYYCDMEQISFE 147
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig19293.6184.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
D7FXA3_ECTSI3.510e-14691.56Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K4P7_9PHAE2.390e-3993.06Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S2FRD3_9STRA2.400e-3349.30Hypothetical protein (Fragment) n=1 Tax=Florenciel... [more]
A0A6G0WIX3_9STRA5.470e-2035.57Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A1V9YA22_9STRA1.560e-1938.36Uncharacterized protein n=1 Tax=Achlya hypogyna Ta... [more]
A0A485KAI9_9STRA1.370e-1338.17Aste57867_1521 protein n=1 Tax=Aphanomyces stellat... [more]
A0A1W0A1J9_9STRA1.020e-536.26Uncharacterized protein (Fragment) n=1 Tax=Thraust... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig19293contigEcto-sp13_S_contig19293:890..3315 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score419.1
Seed ortholog evalue1.4e-114
Seed eggNOG ortholog2880.D7FXA3
Model size711
Hectar predicted targeting categoryother localisation
Exons5
EggNOG OGs2E32A@1,2SA7F@2759
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-05_004610.1
Cds size711
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462981.3022902-CDS-Ecto-sp13_S_contig19293:889..9281681462981.3022902-CDS-Ecto-sp13_S_contig19293:889..928Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19293 890..928 -
1681462981.3149085-CDS-Ecto-sp13_S_contig19293:1272..14581681462981.3149085-CDS-Ecto-sp13_S_contig19293:1272..1458Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19293 1273..1458 -
1681462981.3244839-CDS-Ecto-sp13_S_contig19293:1825..19011681462981.3244839-CDS-Ecto-sp13_S_contig19293:1825..1901Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19293 1826..1901 -
1681462981.3358016-CDS-Ecto-sp13_S_contig19293:2539..26291681462981.3358016-CDS-Ecto-sp13_S_contig19293:2539..2629Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19293 2540..2629 -
1681462981.3509688-CDS-Ecto-sp13_S_contig19293:2995..33151681462981.3509688-CDS-Ecto-sp13_S_contig19293:2995..3315Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19293 2996..3315 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig19293.6184.1prot_Ecto-sp13_S_contig19293.6184.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig19293 890..3315 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig19293.6184.1

>prot_Ecto-sp13_S_contig19293.6184.1 ID=prot_Ecto-sp13_S_contig19293.6184.1|Name=mRNA_Ecto-sp13_S_contig19293.6184.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=237bp
QVGFRDDTSYLTAHYGGRSPRRTARVTANGIPRPPEKASPVGCQADPTVK
SITPTRGSGPASADVDVSRGETVGVGARKAGEGRFLVRPTLSEQLASIGK
AAEDITAGIRRSHGLKPLEGAILTTPSESFLVGKLRCKYPSPVAFFNHKC
VYTFHHPFEATRIAMEMFFRDMRSAALDSPRRELRFKIDHPLCHYTKDYS
HNDPSHFVLIQFSSGLDAERVLEKIMPLIRRSGGVR*
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mRNA from alignment at Ecto-sp13_S_contig19293:890..3315-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig19293.6184.1 ID=mRNA_Ecto-sp13_S_contig19293.6184.1|Name=mRNA_Ecto-sp13_S_contig19293.6184.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2426bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19293:890..3315- (Ectocarpus species13 EcNAP12_S_4_19m)
CAGGTGGGGTTTCGGGACGATACGAGCTACCTCACAGCCCACTACGGTGG
ACGAAGCCCTAGGCGAACTGCTCGAGTGACGGCCAACGGGATTCCAAGGC
CACCCGAAAAGGCGTCACCGGTCGGTTGCCAGGCTGACCCAACCGTGAAA
TCAATTACACCAACCAGGGGCAGCGGCCCCGCGTCAGCTGATGTCGATGT
TTCTAGAGGAGAGACGGTTGGAGTTGGTGCGCGGAAAGCTGGAGAAGGGA
GGTTCTTGGTGAGGCCTACCTTGAGCGAGCAGCTTGCGTCTATCGGGAAG
GCTGCGGAGGATATTACCGCGTAAGATTTGTTTTGCTCTCGCCCCACACC
GTCCTATCAACAAAAACACAAGGACGTATGAGTCGATTTATTGCTGCTTT
CCAAAGAACGATCTGAGTGTACATCCAGTGACCAATGTCATGGCAGTGGC
AGCGGCGTTTGTTGGCGGCCTCGCTGTCGTTGTTGTCGTCACTGTTGCAA
TCAGTTTCATCGTGTCAACAACAAGGCAGGTGCGCATTGGCAGCGCAACC
CTCGGGGCTTTCCCATAACATTGTGACAAGCGTGTTTCATGCGGACGACA
AGGTCCGGTTTTCAGCGAAGCTATTCAGCAAAGAGAAGCACTTACTATAA
CACAACAGATTTTTCTGTAATCCGTGGCTTTTTCAGGGGTATTCGAAGAT
CGCACGGACTAAAACCACTGGAGGGGGCGATACTCACCACGCCGTCGGAG
AGTTTCCTCGTTGGCAAGTTGCGGTGGTGAGTGCCTTTTTTGTACCATAC
CTATGTATCTCCAGAAGTGGAATACATCTATTTCTTGTGTATTACCTATG
TACCTCCCGAAAGGAACTTGGTTCCTCCCTGTTTGTCTCATTTAAGGATA
AACCATGAACCCTTTGCAGGTCTCACAAATGATCACCTGTTTGGAATGGG
ATGAACGTATTGTGTGGCTTGGGGCGAGATAACCACTTAACTGCCATCAC
CAGACTTCCAGCACGGATGGATGGAAATTCAGCTGCTAGCTTTGGTATAG
TCGGGTCAACTGCACCAGGGCCCAAAGGGTGGGTTACTTTTTTTAATATA
TTGAGCGATTGCTACGTCAAAGGTTCTCCAGGCACTCCAAACACACGCAC
ACCACGCGCCGCTCCCTCCCCTACCTGCACATGTTGCAATAGCTCTTTAG
CCATGTGTGCATTTTGCGCTTGTCCCCAGGCATCGCGATCTCAAACACGG
AACAGCACTGACGCCTGTCATGGTGCATGAACTTTTCGATCAACTTGACC
TTGTTGATTCGTGTGTAGAGTACTTCCCATCCGTAATACTTGAGAGAGAA
TAGCGATAACACGTAAGCGTGTTGTCCATCCTTCCATCGTGTTCCGCTCT
CCTTACCACTGCAGTAAATACCCGTCGCCGGTGGCATTCTTCAATCACAA
GTGCGTCTACACGTTTCATCACCCTTTCGAAGCGACAAGGGTAAGGCGGT
GTCTGGTCCACAACTTCAATCAAATGTTGGACGTGGTCCTTTCACTCTAT
AGATGCATGCAATGCAACGCAATTGGCCCATCAGCGAATCATTGGGTGCA
AAATTTCTCTGACGTCGGTACGTAGGAACGGTCGTTGGGAGATGCAAATT
CTGCAGTTGTCCTGCTTTTGAACACTACCTCTTTGTTTTGTTAGAACGAC
ATCGTGAGCCAACCAACATCTTGTGTTGTGCAGTATCGCCACACCAGATG
AATGTGACGAAAGACATGCGATTTCAACCGATCACGCCATGATAGGTTTA
TGTATGCGCGGTACCACAACCCATCCTCTAAAACATTCGTATGGAAATGA
CGGGCAGATCGCCATGGAGATGTTCTTCCGCGACATGCGGAGCGCTGCGC
TGGACTCTCCACGACGCGAGCTGCGTTTCAAGATCGACCACCCTCTGTGC
CACTACACCAAGGACTATTCTCACAACGACCCTTCCCATTTCGTCTTGAT
ACAGTTCAGTTCGGGTTTGGATGCGGAGAGGGTCTTGGAGAAGGTGGAGT
AAATGCTGCACACCTGTTGCCCTCAGACTCAGAGGGCTTCCCTACTTATC
AATGAATCATACCGCGCTAGAGAATTGTGCTTTGCTCGAATTTCGATATT
GAAACACCATGGCTTTTTGTTTCGATCTGGGGTACTACGTCGAGGGTTTG
GGGTAAATCCGATAAACGGGTATGTCGTATCACGACGACGGTGCTTCCAA
AGCACGCGCAAGCATCTTCTCCTGTGCTTTTATCTTGCCGTGAACGATGC
GAATAAGTCTTCGTTCAACCCGCTAGTGTCCTATCAACTTCAAAAACAAT
GCGAACGTTTTGCTTCTCTTCCTCCACCAACCGCCAGATCATGCCGCTCA
TCCGAAGGTCAGGCGGTGTCCGTTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig19293:890..3315-

>mRNA_Ecto-sp13_S_contig19293.6184.1 ID=mRNA_Ecto-sp13_S_contig19293.6184.1|Name=mRNA_Ecto-sp13_S_contig19293.6184.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=711bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19293:890..3315- (Ectocarpus species13 EcNAP12_S_4_19m)
CAGGTGGGGTTTCGGGACGATACGAGCTACCTCACAGCCCACTACGGTGG
ACGAAGCCCTAGGCGAACTGCTCGAGTGACGGCCAACGGGATTCCAAGGC
CACCCGAAAAGGCGTCACCGGTCGGTTGCCAGGCTGACCCAACCGTGAAA
TCAATTACACCAACCAGGGGCAGCGGCCCCGCGTCAGCTGATGTCGATGT
TTCTAGAGGAGAGACGGTTGGAGTTGGTGCGCGGAAAGCTGGAGAAGGGA
GGTTCTTGGTGAGGCCTACCTTGAGCGAGCAGCTTGCGTCTATCGGGAAG
GCTGCGGAGGATATTACCGCGGGTATTCGAAGATCGCACGGACTAAAACC
ACTGGAGGGGGCGATACTCACCACGCCGTCGGAGAGTTTCCTCGTTGGCA
AGTTGCGGTGTAAATACCCGTCGCCGGTGGCATTCTTCAATCACAAGTGC
GTCTACACGTTTCATCACCCTTTCGAAGCGACAAGGATCGCCATGGAGAT
GTTCTTCCGCGACATGCGGAGCGCTGCGCTGGACTCTCCACGACGCGAGC
TGCGTTTCAAGATCGACCACCCTCTGTGCCACTACACCAAGGACTATTCT
CACAACGACCCTTCCCATTTCGTCTTGATACAGTTCAGTTCGGGTTTGGA
TGCGGAGAGGGTCTTGGAGAAGATCATGCCGCTCATCCGAAGGTCAGGCG
GTGTCCGTTGA
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