mRNA_Ecto-sp13_S_contig1928.6179.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1928.6179.1
Unique NamemRNA_Ecto-sp13_S_contig1928.6179.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1928.6179.1 vs. uniprot
Match: A0A6H5L2B2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2B2_9PHAE)

HSP 1 Score: 347 bits (889), Expect = 1.690e-110
Identity = 205/225 (91.11%), Postives = 206/225 (91.56%), Query Frame = 1 
Query:  244 MYTRKQRWRRTRTRKQAWGDLPPELLDAMLAAGGGGMPKSVSWDHSYAAGLKIRADRAAEVAHRAAAEDSKLRAAAXXXXXAAKGTGVEVSIPRSVSCSSLGPKRTLFARTSSSKGELGAAGXXXXXXXXXXXXXXXXXRMLPHRRGVSFNTQVKMVLIPKREEFSELERVKLWWGREDYSQFRQVLIDWKRANAHRISHSDNILSINLSDIDEEEESTTGLDHS 918
            MYTRKQRWRRTRTRKQAWGDLPPELLDAMLAAGGG MPKSVSWDHSYAA LKIRADRAAEVAHRAAAEDSKLRAA XXXXX      VEVSIPRS SCSSLGPKRTLF RTSSSK ELGAA XXXXXXXXXXXXXX   RML HRRGVSFNTQVKMVLIPKREEFSELERVKLWWGREDY+QFRQVLIDWKRANAHRISHSDNILSINLSDIDEEEES TG DHS
Sbjct:    1 MYTRKQRWRRTRTRKQAWGDLPPELLDAMLAAGGGRMPKSVSWDHSYAARLKIRADRAAEVAHRAAAEDSKLRAAXXXXXXXXXXXXVEVSIPRSASCSSLGPKRTLFPRTSSSKDELGAAXXXXXXXXXXXXXXXHKRRMLSHRRGVSFNTQVKMVLIPKREEFSELERVKLWWGREDYAQFRQVLIDWKRANAHRISHSDNILSINLSDIDEEEESATGQDHS 225
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BLAST of mRNA_Ecto-sp13_S_contig1928.6179.1 vs. uniprot
Match: A0A835Z1A2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1A2_9STRA)

HSP 1 Score: 99.4 bits (246), Expect = 3.770e-20
Identity = 44/75 (58.67%), Postives = 62/75 (82.67%), Query Frame = 1 
Query:  679 RGVSFNTQVKMVLIPKREEFSELERVKLWWGREDYSQFRQVLIDWKRANAHRISHSDNILSINLSDIDEEEESTT 903
            R V+F+ +V++VLIPKR+E ++ +R +LWW R+DY++FRQVLIDWK  NA +IS +DNILSINLSD+D E++  T
Sbjct:  107 RAVAFDPRVQVVLIPKRDEINDFDRYRLWWSRDDYAKFRQVLIDWKTINADKISPTDNILSINLSDLDAEDDEPT 181
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1928.6179.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L2B2_9PHAE1.690e-11091.11Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835Z1A2_9STRA3.770e-2058.67Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1928contigEcto-sp13_S_contig1928:4714..9565 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size920
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-26_005580.1
Cds size675
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462980.9338007-CDS-Ecto-sp13_S_contig1928:4713..49291681462980.9338007-CDS-Ecto-sp13_S_contig1928:4713..4929Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1928 4714..4929 -
1681462980.9431028-CDS-Ecto-sp13_S_contig1928:8863..93221681462980.9431028-CDS-Ecto-sp13_S_contig1928:8863..9322Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1928 8864..9322 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462980.9519923-UTR-Ecto-sp13_S_contig1928:9322..95651681462980.9519923-UTR-Ecto-sp13_S_contig1928:9322..9565Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1928 9323..9565 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1928.6179.1prot_Ecto-sp13_S_contig1928.6179.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1928 4714..9322 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1928.6179.1

>prot_Ecto-sp13_S_contig1928.6179.1 ID=prot_Ecto-sp13_S_contig1928.6179.1|Name=mRNA_Ecto-sp13_S_contig1928.6179.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=225bp
MYTRKQRWRRTRTRKQAWGDLPPELLDAMLAAGGGGMPKSVSWDHSYAAG
LKIRADRAAEVAHRAAAEDSKLRAAAAAAAVAAKGTGVEVSIPRSVSCSS
LGPKRTLFARTSSSKGELGAAGGGVRRGSSATTAAQHRRRMLPHRRGVSF
NTQVKMVLIPKREEFSELERVKLWWGREDYSQFRQVLIDWKRANAHRISH
SDNILSINLSDIDEEEESTTGLDHS
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mRNA from alignment at Ecto-sp13_S_contig1928:4714..9565-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1928.6179.1 ID=mRNA_Ecto-sp13_S_contig1928.6179.1|Name=mRNA_Ecto-sp13_S_contig1928.6179.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4852bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1928:4714..9565- (Ectocarpus species13 EcNAP12_S_4_19m)
GCTACCCACCTCGACGGCACGGCCCTCTTGTCTGTCTCTAGTACCTCGGC
GGTGCGGTGCGCTCGCTAGAAGGAAGCTGTCCCTCGCGACACGTCAGCGA
CGGTTGCAGCAGCAGCAGCAGCAGCAGCGGCAGCAGTGACAAAAAATATT
GTTTTGTCCATGTAGGCAGCTGCTCGTCCCACATCAGGAAGGTTCGGAAG
GTTCGTCCAGCGCTACTTAACAACCAGGCTAGGCGGCAGCAGCATGTACA
CGAGGAAACAGAGATGGAGAAGGACTCGGACGCGCAAGCAGGCATGGGGC
GACCTTCCCCCAGAGCTTCTAGACGCGATGCTCGCGGCAGGCGGCGGCGG
GATGCCCAAGTCCGTTTCGTGGGACCACAGCTACGCCGCTGGGCTGAAGA
TTCGAGCAGACAGGGCGGCCGAGGTAGCGCACCGGGCGGCGGCCGAGGAC
TCCAAGCTCAGAGCGGCGGCCGCGGCGGCCGCGGTGGCCGCAAAGGGCAC
GGGGGTCGAGGTCAGCATCCCACGGTCGGTGTCCTGCTCGTCTCTCGGAC
CGAAGCGGACTCTGTTCGCCCGAACCTCATCTTCTAAGGGTGAGCTTGGG
GCCGCGGGGGGCGGCGTCAGGCGAGGGAGTAGCGCGACCACAGCGGCTCA
ACATAGACGGCGCATGCTGCCGCACCGGAGAGGTGTGAGCTTCAACACAC
AGGTAGGTGCTACGTTGGCTCTCGAGATGGAGATTCGGGGCTGCTGAGCT
GTTGGTTCATGACACAACACTGCTGTTATGTTTTCGTGCGTTTCCGCTCC
TCGCAGAATACACAGCAGCAGCTTTGATTCGTTTTGTGATCGGCACCATT
CGGTCAAGTGCAACTCTCCGTATAGACGGAGACTAGCTCGTGTTAGTGTG
GACGACGCAATCGAACATGCTGCGAAGGAAAGGGGGGCATGAGGTGGTGG
CGTGGTCCATGTGTTCATGATATCCCGTCAGCAGCTGTCTCTTGGTTGAT
TCTACTAGCATTCTCTCTGGAACTTCAGTACTTTCAGCCAAAGATGACCC
CCTCATGCTCACATCATCGACTTCTTTTTTTTCTCTTTCATGTGTGATGA
AAGCGGTTGCAAGCGGCGTAACCGCGCCGTCCTTTCTTGGAAGTCCGGTT
GTGGAACAAGAACGAACGAATCCCTGTCACCACACTGCTGGCTAGCGGCA
CTCCTGCTTTCAAGTGGGCATCTATGACACCCCGCTTTTCATGTTCCATC
GCGAACAGCTCCACCCCAAATACAAGAATAAACACCGAGGCAGGTATACT
GTCCTCACAGGGGTCAAACAGAACAGAAAAGCCCACCTCTTGGTGTTCGC
GTTGTCCTCTGAAAACGTTTCCTGAGGACCCCCCCCCGCTACATCTCAAG
ATCTCCCACCTCTCATGGTTGATTTCATCGTGAATGGGTCAGAAACGTCA
GCCACCCTCTTCCTCACGGGACTCCTCCTCTCCATCCCGCGCTGTAGATC
TTCTACTGCTGTACCGTGGTCTCTTGTCTTCATGTTTGCATGGGTATTTC
TATTTCGGCAGGCATACATGCGGAGAAGAATAACTGCTGTACGTGGACGT
GTGTGGACGTCATCGTTCAATACCATCCCAATTCTTTTGTTCGAACAGCG
GTCAGTCCCAGCCGCAGCAGCGCAGCAACCCAACCTTTCTTTCGTAGCCA
TGGTTGTACAAGTACTTATATATACCCTCTGAGAAATGAAAGCCGATCGT
TGACCAAGCCGTGCATGCACATGAGACGTTACCTGTAATTGCTTCTTGTC
TTACTTTAGGTAAAATACAGCCAGTTAGCTCGTGCCAACGAAGTCTCACT
CCCTGGAACTTAAAACAATTTTGGGTGGTCTGTTATTTTGTGGTCTTCAC
ATCCGCACCGACCCAACTGACGCGGACCGCTCTCCGTGGTCACAGGCCAA
CTACCGTATACGACATGATACAAAATAACACACCCCTTGGACTGATTTTC
AAAGCTCGATTTATCAAACAGCAGAAAGAGTCACGGCGCCGATAGCGGCG
GCGTCGAAACCGTCTGGTCGAGAACTCTCCGAAAAAACAACGTTTCGTTT
GTGCATCCTCTTCGTTGTGAAGTAATAGAATTTTGAGAATTGGTCGAGGG
GGTGTGTTATCTTGTGTCGTATGGTAGGTACCCGAAGAGAGTTGTGCGCG
TACAGTACATACCTTCTGTAAGAGGGGCTTGACGACAACAACCGCGCCGC
CTTCAAAGCATGCGTGTGCCTGCCTACTGCCTAGAATATGAGTGTAAATA
GTTCACCCGCACAACCCGCACCTTCTTCCTCGACACTCCCAGCACAACAC
TGCATACAACAGCAGTCTGACACAACACAAGATGGCCACCAAATGGTTCT
TGTTGAGTACGTTGTCCACAGGGGAGCAGTAATTTCGAAAGATGCTTCTT
GGGAATTTCATTGTTCTTTCTTACCCAGTAGAGAACTACAGGGAACGTAT
TGTTAAATGTGGTTTGCACAGCTGTACAGATTTTTTTGTACTTAGCACCA
GCTGGTATTACTAATAATAGAGTTATCATCAGTATATAGACTTCACCACA
CCCCCGTTTGACGGTGGGTATATCTCGAACGGGTATTCTTCTAATGGGTT
ATTACTTTTCCTAGTATTCTTGTCAGGTATAAGTCCACGAAGCATCCGCG
ATGCCAGCGGATAAGACATTGCCCGCTGTACTGCAAATGCATCTACATTG
CTGCTGTGAGTGCGTGCCGCTTTTGATATATTTCCCGTCCGTTCCGTCAG
TGAAGGGATATACAAAAACAACCGAACCCGTGCGTTCAACAAGTGAAATA
CAGAGGAAAACACGCAGCAAGTGAACAACAAAGATCATGGGTCTGGTATG
TACTCGAACACCTTTATGTATCTATTTTTGGGAAATTCCTGTCGTGCCAC
CGGCCAAGCTGGGGTACCCGGTTCACGGCCCAATAGCCCAAAAGCCTGCA
ACACGTTACATGAACTACACTGTGGCTGATCGCTGATCGATCGCCCATCT
CCCCGTGAATCGAGGTATTGTAGGTACCCCCAGAACGTGCTCTTTCATTC
CCCGTCCCGTTTAACCCCTCCCTGCTTCGCCAAAGGGCACTTGCAAAAAA
AGATCAACAAACGTTCTACGCGTACGGCAGCGCGACGTTCTCTGAATCGT
TACGAAATAATGGCCTCGCGAGAAGGTCCTCCGCCTTATTTTTCCGTCAT
CTGTACAGCATTAGCTGCCTAAGGTTGCCCCCCCCGCTGAGTTTCCTAAA
AAGAAAAAAAGAAACTGGCTATGGTGCAAAATATAAGGGCCTGTTTTAGC
GTTGAACAGAAGTTGCACCTAATTGAACACCCAATTTTCGAATGGATTTA
AGTTTGGTTTTGGGCCAATAAGTGCATCGTTTTAACATAATTTTACCGCA
CCCAAGTGTTCGTCGAGGTTCAGTAACACCCAAATACGGTGGAATCGCTA
CCGCGAGATGACGTGGTCACCAACCAGTTATACCGAGCAGTGGAAAATGT
GCACCACACAGGAACTGTAAAAATGGGAGTATCAGCACACACACGAAGCT
AACCATATCAGCAGGTGGTGCCAGTAGTCCAAGCCTTATCCTCGGGCGAG
CTCTACAACTTTTATTTGGACTCTCTCGCTGCACACAACCGGCCGTTGGC
TTTTGACATCGCACATTTTGGGAATCGACCTCCACAGCAACCCAACCTGC
ACGAAAACTTGCAGTTGACACGCAGAATCGTTGCAATGCAGCTATTTACC
AGCAGCGGGCAGTGGGCGATGCGTGTGGGTGCCCCACGGCCAGTGTCCCA
CATGCGGTCCCGTCAGGGGTATCGCCAACACGCGTCCAGCTCATCAGGGC
GAATTCCACCTCGTGTACTTCGATTCAGCAAAAAACAAGTCAATTTTCAG
TTGTTTTTGCGGCAGCCACTCTCGTCGTCCAACTTTTCCGGGCAGAGAAA
GCATCATCGTGTTTTTCCCTGTGGACCAATCAGTGTCGTTGGCCGCCGAT
ACGCCCCTACAAACTTAGTTTTTGTAGATGGAAAGTTTGAGGCCCCCATC
TCTGAAGTTGCTCACTGCTGTTTAGTTTTGTTGCGACATTTCCCGTCTCT
TCTAAAAGTTGCGCCCCCACCACTTTTTTTATGGGATATGCGTTAGCTTC
AAGACACACACAAGCCCTTGAAATGGCTCGAAATCTTGCGAGTTCTGAAC
GCCTTTGGGTCCAATCTCCCGAGAAAAGTTGGCCCAGAATATGGTGAAGA
CGTTGAGTCAGCCCGTTCGTCCCGTGGCTGAAATGGCTCGATCAAAAACA
TAAAAGTCCGTTCACTCAAAAATAGAGACGGCCCCAGGGCGTGCTTTTTC
ATCATGGCGTTTGACGCCCCCCCCCCCCTCTGTGATCGGAGGACGGAGTA
AGCCGCGGATATGCACACGGCTCAACGAGCTAATATGGCTGCCCAAAAAG
TGTGTCTGCTCCTGGGATGGTGCCTTTTGTCGCTCCATGTGTACACCCTG
CTTACCCCCCCTCCCCCGCCCCCCCCCCATGCTCTTGGGTGGAAACTGCC
TCCTCCTCGCTCGCGGCGTGTATCCCGTGTCCGCAGGTGAAAATGGTCCT
TATCCCCAAGAGGGAGGAGTTTAGCGAGCTGGAGAGGGTGAAGCTGTGGT
GGGGGCGAGAGGACTACTCGCAGTTCCGGCAGGTACTGATCGACTGGAAG
CGGGCGAACGCGCACCGTATCTCACATTCGGACAACATCCTGTCCATCAA
CCTCAGCGACATCGACGAGGAAGAGGAGTCCACCACCGGCCTGGACCATT
CA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1928:4714..9565-

>mRNA_Ecto-sp13_S_contig1928.6179.1 ID=mRNA_Ecto-sp13_S_contig1928.6179.1|Name=mRNA_Ecto-sp13_S_contig1928.6179.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=675bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1928:4714..9565- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTACACGAGGAAACAGAGATGGAGAAGGACTCGGACGCGCAAGCAGGC
ATGGGGCGACCTTCCCCCAGAGCTTCTAGACGCGATGCTCGCGGCAGGCG
GCGGCGGGATGCCCAAGTCCGTTTCGTGGGACCACAGCTACGCCGCTGGG
CTGAAGATTCGAGCAGACAGGGCGGCCGAGGTAGCGCACCGGGCGGCGGC
CGAGGACTCCAAGCTCAGAGCGGCGGCCGCGGCGGCCGCGGTGGCCGCAA
AGGGCACGGGGGTCGAGGTCAGCATCCCACGGTCGGTGTCCTGCTCGTCT
CTCGGACCGAAGCGGACTCTGTTCGCCCGAACCTCATCTTCTAAGGGTGA
GCTTGGGGCCGCGGGGGGCGGCGTCAGGCGAGGGAGTAGCGCGACCACAG
CGGCTCAACATAGACGGCGCATGCTGCCGCACCGGAGAGGTGTGAGCTTC
AACACACAGGTGAAAATGGTCCTTATCCCCAAGAGGGAGGAGTTTAGCGA
GCTGGAGAGGGTGAAGCTGTGGTGGGGGCGAGAGGACTACTCGCAGTTCC
GGCAGGTACTGATCGACTGGAAGCGGGCGAACGCGCACCGTATCTCACAT
TCGGACAACATCCTGTCCATCAACCTCAGCGACATCGACGAGGAAGAGGA
GTCCACCACCGGCCTGGACCATTCA
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