mRNA_Ecto-sp13_S_contig1928.6178.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1928.6178.1
Unique NamemRNA_Ecto-sp13_S_contig1928.6178.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1928.6178.1 vs. uniprot
Match: D8LQA1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQA1_ECTSI)

HSP 1 Score: 550 bits (1417), Expect = 2.540e-191
Identity = 388/447 (86.80%), Postives = 392/447 (87.70%), Query Frame = 1 
Query:   91 GQGNESGGADAWEVEVAVAKAMAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGD--GLGDVREGTDEGQKEEARIGEEVVGGGRGKKRRPCARASFSVGASGLAGGGGPDWSPNGGANGTFPLRRALTFGEVGGGHSPSSPADSGGGRLKEVPLSEAQAMAESLRAWRESFDVRNAFFGGESGDGDAEEDRGRAVSLQGQSRSFARRGRATALVTSRTKWTSDVVGGREGSSSVEAKGLCLEPGGRSGGEEGSGAMAXXXXXXXXXXXXXXG-CVDRGQRQDGVGEKTQRTLSDQEWSSSRRVVEMAASEAASLTNPVMAAFERERKEAAARQAEVEXXXXXXXXXXXXXXXXXXXXXNGEVVPXXXXXXXXXXXXAEDDGELHVGSVVRLGLNDAPGSAAAASAAGLRIAAEGISNLSLRSRDSVENLQEMGEQSWGPLPLSSSA 1422
            GQGNESGGADAWEVEVAVA    XXXXXXXXXXX         XXXXXXXXX     GL DV EGTDEGQKEEARIG+EVVG G GKKRRPCARASFSVG SGLAGGGGPDWSPNGGANGTFPLRRALTFGEVGGGH P SPADSGGGRL+EVPLSEAQAMAESLRAWR+SFDVRNAFFG ESGDGDAEEDRGRAVSLQ QSRSFARRGRATALVTSRTKWTSDVVGG EGSS VEAKGL LE GGRSGGEEGSGAMA XXXXXXXXXXXXX  CVDRGQRQDGVGEKT RTLSDQEWSSSRR+VEMAASEAASLTNPVMAAFERERKEAAARQAEVE   XXXXXXXXXXXXXXXXXX      XXXXXXXX    AEDDGELHVGSVVRLGLNDAPGS      AGLRIAAEGISNLSLRSRDSVENLQE GEQSWGPLPLSSSA
Sbjct:   34 GQGNESGGADAWEVEVAVAXXXXXXXXXXXXXXXGGAVPELSAXXXXXXXXXXXXXXGLEDVPEGTDEGQKEEARIGKEVVGSGGGKKRRPCARASFSVGGSGLAGGGGPDWSPNGGANGTFPLRRALTFGEVGGGHGPCSPADSGGGRLREVPLSEAQAMAESLRAWRQSFDVRNAFFG-ESGDGDAEEDRGRAVSLQVQSRSFARRGRATALVTSRTKWTSDVVGGGEGSSGVEAKGLGLELGGRSGGEEGSGAMAGXXXXXXXXXXXXXXXCVDRGQRQDGVGEKTHRTLSDQEWSSSRRIVEMAASEAASLTNPVMAAFERERKEAAARQAEVEDAQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGT-AEDDGELHVGSVVRLGLNDAPGSXXXXXXAGLRIAAEGISNLSLRSRDSVENLQERGEQSWGPLPLSSSA 478
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BLAST of mRNA_Ecto-sp13_S_contig1928.6178.1 vs. uniprot
Match: A0A6H5L2B2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2B2_9PHAE)

HSP 1 Score: 525 bits (1353), Expect = 2.570e-177
Identity = 359/456 (78.73%), Postives = 368/456 (80.70%), Query Frame = 1 
Query:   61 LEDVVQPAVVGQGNESGGADAWEVEVAVAKAMAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGDGLGDVREGTDEGQKEEARIGEEVVGGGRGKKRRP-CARASFSVGASGLAGGGGPDWSPNGGANGTFPLRRALTFGEVGGGHSPSSPADSGGGRLKEVPLSEAQAMAESLRAWRESFDVRNAFFGGESGDGDAEEDRGRAVSLQGQSRSFARRGRATALVTSRTKWTSDVVGGREGSSSVEAKGLCLEPGGRSGGEEGSGAMAXXXXXXXXXXXXXXGCVDRGQRQDGVGEKTQRTLSDQEWSSS-RRVVEMAASEAASLTNPVMAAFERERKEAAARQAEVEXXXXXXXXXXXXXXXXXXXXXNGEVVPXXXXXXXXXXXXAEDDGELHVGSVVRLGLNDAPGSAAAASAAGLRIAAEGISNLSLRSRDSVENLQEMGEQSWGPLPLSSSA 1422
            LEDV Q    GQ NESGGADA E+EVAVAKA A                    XXXXXXX   GDGLGDV +GTDE QK                     CARASFSVG SGLAGGGGPDWSPNGGANGTFPLRRALTFGEVGGGHSPSSPADSGG RLKEVPLSEAQAMAESLRAWR+SFDVRNA FGGESGDGDAEEDR RAVSLQ QSRSFAR GRATAL TS+TKWT+DVVGG EGSSSVEA GL L+PGGRSGGEEGSGAM XXXXXXXXXXXXX   VDRGQRQDGVGEKT RTLSDQEWSSS RR VEMAASEAASLTNPVMAAFER+RKEAAARQAEV XXXXXXXXXXXXXXXXXX   NGEV P            AEDDGELH+GSVVRLGLNDAPGSA+AASAAGLRIAAEGISNLSLRSRDSVENLQEMGEQSWGPLPLSSSA
Sbjct:  330 LEDVCQQVAAGQRNESGGADALEMEVAVAKAKAAAVGAAGGGIAGGAVPELSAXXXXXXXN--GDGLGDVPQGTDEEQKXXXXXXXXXXXXXXXXXXXXHCARASFSVGESGLAGGGGPDWSPNGGANGTFPLRRALTFGEVGGGHSPSSPADSGGARLKEVPLSEAQAMAESLRAWRQSFDVRNASFGGESGDGDAEEDRDRAVSLQEQSRSFARIGRATALFTSQTKWTTDVVGGGEGSSSVEATGLGLDPGGRSGGEEGSGAMXXXXXXXXXXXXXXGSRVDRGQRQDGVGEKTHRTLSDQEWSSSSRRTVEMAASEAASLTNPVMAAFERKRKEAAARQAEVXXXXXXXXXXXXXXXXXXXKAGNGEVAPAAGAEGAPAA--AEDDGELHMGSVVRLGLNDAPGSASAASAAGLRIAAEGISNLSLRSRDSVENLQEMGEQSWGPLPLSSSA 781
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1928.6178.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LQA1_ECTSI2.540e-19186.80Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L2B2_9PHAE2.570e-17778.73Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1928contigEcto-sp13_S_contig1928:3067..4491 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1425
Hectar predicted targeting categoryother localisation
Exons1
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-26_005570.1
Cds size1425
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462980.9035285-CDS-Ecto-sp13_S_contig1928:3066..44911681462980.9035285-CDS-Ecto-sp13_S_contig1928:3066..4491Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1928 3067..4491 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1928.6178.1prot_Ecto-sp13_S_contig1928.6178.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1928 3067..4491 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1928.6178.1

>prot_Ecto-sp13_S_contig1928.6178.1 ID=prot_Ecto-sp13_S_contig1928.6178.1|Name=mRNA_Ecto-sp13_S_contig1928.6178.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=475bp
MERERCRQALPTPPPLQQQPLEDVVQPAVVGQGNESGGADAWEVEVAVAK
AMAAAVAAAGGGIAGGVVPELSAAAAAAAAVAGGDGLGDVREGTDEGQKE
EARIGEEVVGGGRGKKRRPCARASFSVGASGLAGGGGPDWSPNGGANGTF
PLRRALTFGEVGGGHSPSSPADSGGGRLKEVPLSEAQAMAESLRAWRESF
DVRNAFFGGESGDGDAEEDRGRAVSLQGQSRSFARRGRATALVTSRTKWT
SDVVGGREGSSSVEAKGLCLEPGGRSGGEEGSGAMAGGGGAASDGSSSGG
GCVDRGQRQDGVGEKTQRTLSDQEWSSSRRVVEMAASEAASLTNPVMAAF
ERERKEAAARQAEVEEAQAARAAAMVKQAAAAAKAGNGEVVPAAAAGAAG
AAGAAEDDGELHVGSVVRLGLNDAPGSAAAASAAGLRIAAEGISNLSLRS
RDSVENLQEMGEQSWGPLPLSSSA*
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mRNA from alignment at Ecto-sp13_S_contig1928:3067..4491-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1928.6178.1 ID=mRNA_Ecto-sp13_S_contig1928.6178.1|Name=mRNA_Ecto-sp13_S_contig1928.6178.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1425bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1928:3067..4491- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGAGCGGGAGCGATGCCGGCAAGCCTTGCCAACGCCGCCGCCGCTGCA
GCAGCAGCCGCTCGAGGACGTGGTTCAACCAGCGGTGGTGGGGCAGGGGA
ACGAAAGCGGCGGCGCCGATGCGTGGGAGGTGGAGGTGGCGGTGGCGAAG
GCGATGGCGGCTGCCGTTGCCGCGGCAGGCGGCGGCATCGCGGGGGGAGT
GGTCCCGGAGTTGTCGGCCGCCGCTGCCGCCGCCGCCGCCGTCGCCGGCG
GCGACGGCCTGGGAGACGTCCGCGAAGGGACGGATGAGGGGCAGAAGGAG
GAAGCGCGCATCGGCGAAGAGGTGGTGGGCGGCGGCCGCGGGAAGAAGAG
GAGACCCTGCGCGAGAGCGAGCTTCTCAGTCGGGGCGTCGGGCCTTGCCG
GAGGAGGCGGGCCCGACTGGTCCCCGAACGGCGGCGCCAACGGGACCTTT
CCCCTCCGCAGGGCGCTTACGTTTGGCGAGGTCGGCGGCGGCCACAGCCC
GTCCTCACCCGCGGACTCCGGCGGCGGCCGCCTGAAGGAAGTGCCGCTCT
CGGAGGCGCAGGCCATGGCCGAGTCCCTGCGCGCCTGGCGCGAGAGTTTC
GACGTTCGGAACGCCTTCTTCGGCGGCGAGTCCGGCGACGGCGATGCGGA
GGAAGACAGGGGCAGAGCCGTGTCGCTCCAGGGGCAAAGCCGGAGCTTCG
CCCGGAGAGGACGCGCCACGGCTCTGGTTACGTCGCGGACAAAGTGGACT
AGTGATGTCGTCGGCGGCAGAGAGGGCTCGAGCAGCGTAGAAGCGAAAGG
CCTCTGTCTTGAACCGGGGGGCAGGAGCGGAGGCGAGGAGGGCTCAGGCG
CGATGGCCGGCGGCGGCGGAGCCGCAAGCGACGGCAGCAGCAGCGGCGGG
GGCTGCGTAGACCGGGGCCAGCGGCAGGACGGGGTCGGGGAGAAGACACA
ACGGACTCTGAGCGACCAGGAGTGGTCGTCGTCGAGAAGGGTAGTCGAGA
TGGCCGCCAGCGAAGCCGCGTCGCTGACGAACCCGGTCATGGCGGCCTTC
GAGCGGGAGCGCAAGGAGGCCGCCGCGAGGCAGGCGGAGGTCGAGGAGGC
GCAGGCGGCGAGAGCGGCGGCAATGGTGAAGCAGGCGGCGGCGGCAGCGA
AGGCCGGGAATGGCGAAGTGGTTCCCGCGGCGGCGGCGGGCGCGGCGGGC
GCGGCTGGCGCGGCGGAGGACGATGGCGAGCTTCATGTGGGGTCGGTCGT
ACGGCTGGGCTTGAACGACGCCCCCGGGTCGGCGGCGGCGGCGTCTGCGG
CGGGCCTCCGCATTGCCGCCGAAGGGATATCGAACCTCTCCCTGAGATCG
AGAGACTCGGTGGAGAACCTGCAGGAGATGGGGGAGCAGTCTTGGGGGCC
GCTACCTCTGTCATCCTCCGCCTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1928:3067..4491-

>mRNA_Ecto-sp13_S_contig1928.6178.1 ID=mRNA_Ecto-sp13_S_contig1928.6178.1|Name=mRNA_Ecto-sp13_S_contig1928.6178.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1425bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1928:3067..4491- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGAGCGGGAGCGATGCCGGCAAGCCTTGCCAACGCCGCCGCCGCTGCA
GCAGCAGCCGCTCGAGGACGTGGTTCAACCAGCGGTGGTGGGGCAGGGGA
ACGAAAGCGGCGGCGCCGATGCGTGGGAGGTGGAGGTGGCGGTGGCGAAG
GCGATGGCGGCTGCCGTTGCCGCGGCAGGCGGCGGCATCGCGGGGGGAGT
GGTCCCGGAGTTGTCGGCCGCCGCTGCCGCCGCCGCCGCCGTCGCCGGCG
GCGACGGCCTGGGAGACGTCCGCGAAGGGACGGATGAGGGGCAGAAGGAG
GAAGCGCGCATCGGCGAAGAGGTGGTGGGCGGCGGCCGCGGGAAGAAGAG
GAGACCCTGCGCGAGAGCGAGCTTCTCAGTCGGGGCGTCGGGCCTTGCCG
GAGGAGGCGGGCCCGACTGGTCCCCGAACGGCGGCGCCAACGGGACCTTT
CCCCTCCGCAGGGCGCTTACGTTTGGCGAGGTCGGCGGCGGCCACAGCCC
GTCCTCACCCGCGGACTCCGGCGGCGGCCGCCTGAAGGAAGTGCCGCTCT
CGGAGGCGCAGGCCATGGCCGAGTCCCTGCGCGCCTGGCGCGAGAGTTTC
GACGTTCGGAACGCCTTCTTCGGCGGCGAGTCCGGCGACGGCGATGCGGA
GGAAGACAGGGGCAGAGCCGTGTCGCTCCAGGGGCAAAGCCGGAGCTTCG
CCCGGAGAGGACGCGCCACGGCTCTGGTTACGTCGCGGACAAAGTGGACT
AGTGATGTCGTCGGCGGCAGAGAGGGCTCGAGCAGCGTAGAAGCGAAAGG
CCTCTGTCTTGAACCGGGGGGCAGGAGCGGAGGCGAGGAGGGCTCAGGCG
CGATGGCCGGCGGCGGCGGAGCCGCAAGCGACGGCAGCAGCAGCGGCGGG
GGCTGCGTAGACCGGGGCCAGCGGCAGGACGGGGTCGGGGAGAAGACACA
ACGGACTCTGAGCGACCAGGAGTGGTCGTCGTCGAGAAGGGTAGTCGAGA
TGGCCGCCAGCGAAGCCGCGTCGCTGACGAACCCGGTCATGGCGGCCTTC
GAGCGGGAGCGCAAGGAGGCCGCCGCGAGGCAGGCGGAGGTCGAGGAGGC
GCAGGCGGCGAGAGCGGCGGCAATGGTGAAGCAGGCGGCGGCGGCAGCGA
AGGCCGGGAATGGCGAAGTGGTTCCCGCGGCGGCGGCGGGCGCGGCGGGC
GCGGCTGGCGCGGCGGAGGACGATGGCGAGCTTCATGTGGGGTCGGTCGT
ACGGCTGGGCTTGAACGACGCCCCCGGGTCGGCGGCGGCGGCGTCTGCGG
CGGGCCTCCGCATTGCCGCCGAAGGGATATCGAACCTCTCCCTGAGATCG
AGAGACTCGGTGGAGAACCTGCAGGAGATGGGGGAGCAGTCTTGGGGGCC
GCTACCTCTGTCATCCTCCGCCTGA
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