mRNA_Ecto-sp13_S_contig19257.6166.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig19257.6166.1 vs. uniprot
Match: D7FJ42_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJ42_ECTSI) HSP 1 Score: 308 bits (789), Expect = 5.910e-102 Identity = 153/155 (98.71%), Postives = 154/155 (99.35%), Query Frame = 1
Query: 1 QVCAISNEVLREPVAACELGYLYNKDVLISGLLNRDLNPAFNHIRGLKDIVECKLTPNPSFEKEDRAFDGPEPARFMCPVTLQEMNGSHAFVVLMSTGWVMSEKATKEVGIAGLQEEYGPFTEDDIVGLAPTDEERETRTRQLIAKREKARLAKK 465
+VCAISNEVLREPVAACELGYLYNKDVLISGLLNRDLNPAFNHIRGLKDIVECKLTPNPSFEKEDRAFDGPEPARFMCPVTLQEMNGSHAFVVLMSTGWVMSEKATKEVGIAGLQEEYGPFTEDDIVGLAPTDEERETRTRQLI KREKARLAKK
Sbjct: 44 KVCAISNEVLREPVAACELGYLYNKDVLISGLLNRDLNPAFNHIRGLKDIVECKLTPNPSFEKEDRAFDGPEPARFMCPVTLQEMNGSHAFVVLMSTGWVMSEKATKEVGIAGLQEEYGPFTEDDIVGLAPTDEERETRTRQLITKREKARLAKK 198
BLAST of mRNA_Ecto-sp13_S_contig19257.6166.1 vs. uniprot
Match: A0A6V1S5E2_HETAK (Replication termination factor 2 n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1S5E2_HETAK) HSP 1 Score: 162 bits (409), Expect = 7.450e-45 Identity = 80/140 (57.14%), Postives = 103/140 (73.57%), Query Frame = 1
Query: 1 QVCAISNEVLREPVAACELGYLYNKDVLISGLLNRDLNPAFNHIRGLKDIVECKLTPNPSFEK----EDRAFDGPEPARFMCPVTLQEMNGSHAFVVLMSTGWVMSEKATKEVGIAGLQEEYGPFTE-DDIVGLAPTDEE 405
+ CAISNEVL+EPV ACELG LYNK+ + + LL + LN +F HIRGLKD+VE KLTPNPS+E+ +D PA+++CPVTL EMNGS FVV+ TGWV+S++A +EVG LQ EYGPF +D+V LAP +E+
Sbjct: 39 KTCAISNEVLQEPVVACELGNLYNKEAIFTCLLEKTLNQSFQHIRGLKDLVEVKLTPNPSYEEKGAEDDIKLKSELPAKYICPVTLIEMNGSQPFVVVWPTGWVLSDRALREVGAPALQAEYGPFRPGEDVVRLAPPEED 178
BLAST of mRNA_Ecto-sp13_S_contig19257.6166.1 vs. uniprot
Match: A0A836CNB3_9STRA (Rtf2 RING-finger-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CNB3_9STRA) HSP 1 Score: 160 bits (404), Expect = 2.310e-44 Identity = 75/142 (52.82%), Postives = 104/142 (73.24%), Query Frame = 1
Query: 1 QVCAISNEVLREPVAACELGYLYNKDVLISGLLNRDLNPAFNHIRGLKDIVECKLTPNPSFEKEDRAFDGPEPARFMCPVTLQEMNGSHAFVVLMSTGWVMSEKATKEVGIAGLQEEYGPFTEDDIVGLAPT-DEERETRTR 423
+VCA+SNE L+EP+ CELGYLYNKD ++S LL+R L+P F H+RGLKD++E KLT N ++++ D E +MCP+T QE G + F ++ STGWV+S++A EVGI GLQ EYGPF +DD++ LAP DE+++ R R
Sbjct: 42 KVCAVSNERLQEPIVVCELGYLYNKDAVLSALLDRTLDPTFAHLRGLKDLIEPKLTANRAYDESDS-----ESPPYMCPITFQEFTGRYPFSIIRSTGWVISDRAIAEVGIEGLQAEYGPFVQDDVMRLAPDKDEQQQLRQR 178
BLAST of mRNA_Ecto-sp13_S_contig19257.6166.1 vs. uniprot
Match: A0A7S3H2A3_9STRA (Replication termination factor 2 n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3H2A3_9STRA) HSP 1 Score: 150 bits (378), Expect = 3.230e-40 Identity = 71/147 (48.30%), Postives = 101/147 (68.71%), Query Frame = 1
Query: 1 QVCAISNEVLREPVAACELGYLYNKDVLISGLLNRDLNPAFNHIRGLKDIVECKLTPNPSFEKEDRAFDGPEPARFMCPVTLQEMNGSHAFVVLMSTGWVMSEKATKEVGIAGLQEEYGPFTEDDIVGLAPTDEERETRTRQLIAKR 441
++C S E LR P++ CELG LYN + +IS LL++ ++ A +H+R +KD+ + KL PNP++ +D DG PA F CP+T E NG+H FV + STG+V+SEKA KE+GI LQ EYGPF +D+V L PT E E +T Q++ +R
Sbjct: 63 RLCTHSGESLRVPISCCELGNLYNTESIISALLDKKVSAAASHVRNMKDLKQLKLFPNPNYSPDDEV-DGELPAMFSCPITKMEFNGNHPFVAIWSTGYVLSEKAIKELGIEALQSEYGPFQAEDLVKLIPTQFELEAQTAQMVQRR 208
BLAST of mRNA_Ecto-sp13_S_contig19257.6166.1 vs. uniprot
Match: W7TG44_9STRA (Replication termination factor 2 n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7TG44_9STRA) HSP 1 Score: 147 bits (372), Expect = 2.500e-39 Identity = 76/165 (46.06%), Postives = 100/165 (60.61%), Query Frame = 1
Query: 1 QVCAISNEVLREPVAACELGYLYNKDVLISGLLNRDLNPAFNHIRGLKDIVECKLTPNPSFEKEDRAFDGPEPA---------------------------RFMCPVTLQEMNGSHAFVVLMSTGWVMSEKATKEVGIAGLQEEYGPFTEDDIVGLAPTDEERET 414
+VCA+S+E LR+PV ACELG+LYNK+ ++ LL LNPAF HIRG+KD++ C+ T NP++ E A + A +++CPV EMN FVV+ STGWV+SE+A KEVG A LQ+EYGPF DD++ L P DEE ET
Sbjct: 41 RVCAVSSERLRDPVVACELGHLYNKEAVLLALLEHTLNPAFAHIRGMKDLIACRFTINPNWTDETAAQASAQEAWAANEAKGEGTNAGTMVGSFAEEGAVSKYICPVARVEMNAKQPFVVIRSTGWVLSERALKEVGAASLQDEYGPFDSDDLIRLVP-DEEEET 204
BLAST of mRNA_Ecto-sp13_S_contig19257.6166.1 vs. uniprot
Match: A0A7S2RH24_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RH24_9STRA) HSP 1 Score: 125 bits (314), Expect = 7.930e-31 Identity = 68/174 (39.08%), Postives = 105/174 (60.34%), Query Frame = 1
Query: 1 QVCAISNEVLR--EPVAACELGYLYNKDVLISGLLNRDLNPAFNHIRGLKDIVECKLTPNPSFEKEDRAF-----------------DGPEPARFMCPVTLQEMNGSHAFVVLMSTGW---VMSEKATKEVGIAGLQEEYGPFTEDDIVGLAPTDEERETRTRQLIAKREKARL 456
+ CA+SNE L+ PV A E+G L++K+ ++ LL++++ F+HIRGL+D++EC+ NPS+ +E ++ D + + CPV EMNG H FVVL T V+SE+A K+VG LQEEYGPFT DD++ + P++EER ++ A+RE+ R+
Sbjct: 43 RTCALSNEALQPGSPVVADEVGNLFSKEAVLKRLLDKNMPVEFSHIRGLRDVIECRFFANPSWSEEGKSSEAAGGTSSSGPGMQWSTDNDSLSPYSCPVASVEMNGRHPFVVLRGTTKPVNVLSERAIKQVGTDALQEEYGPFTGDDVIKVVPSEEERPQLVARMAARREEERI 216
BLAST of mRNA_Ecto-sp13_S_contig19257.6166.1 vs. uniprot
Match: T1J2E7_STRMM (Replication termination factor 2 n=1 Tax=Strigamia maritima TaxID=126957 RepID=T1J2E7_STRMM) HSP 1 Score: 123 bits (309), Expect = 3.780e-30 Identity = 72/159 (45.28%), Postives = 97/159 (61.01%), Query Frame = 1
Query: 7 CAISNEVLREPVAACELGYLYNKDVLISGLLNRDLNPAF-NHIRGLKDIVECKLTPNPSFEK-----EDRAFDGPEPARFMCPVTLQEMNGSHAFVVLMSTGWVMSEKATKEVGIAGLQEEYGPFTEDDIVGLAPTDEERETRTRQLIAKREKARLAKK 465
CA+S E+LR+PV +CELG LYNKD +I LL++ P H+R LKD+VE KLT NP++EK D+ D + A F+CP+ EMNG + F L G V+SE+A K V + P+ EDDI+ L TD+E R++ A REKA+L KK
Sbjct: 71 CALSQEILRQPVVSCELGRLYNKDAVIEHLLDKTQTPELAKHVRNLKDVVELKLTENPAYEKISNHKGDKYMDH-QMAPFICPIVNMEMNGKYKFCYLRRCGCVLSERAFKLVKSETCHKCGKPYNEDDIITLNGTDDEVVLLRRKMDASREKAKLLKK 228
BLAST of mRNA_Ecto-sp13_S_contig19257.6166.1 vs. uniprot
Match: UPI001E671F51 (replication termination factor 2-like n=1 Tax=Procambarus clarkii TaxID=6728 RepID=UPI001E671F51) HSP 1 Score: 123 bits (308), Expect = 3.880e-30 Identity = 65/157 (41.40%), Postives = 99/157 (63.06%), Query Frame = 1
Query: 7 CAISNEVLREPVAACELGYLYNKDVLISGLLNRDLNPAFNHIRGLKDIVECKLTPNPSFEKEDR----AFDGPEPARFMCPVTLQEMNGSHAFVVLMSTGWVMSEKATKEVGIAGLQEEYGPFTEDDIVGLAPTDEERETRTRQLIAKREKARLAKK 465
C+IS L+ PV ACELG +YNK+V+++ LL+R P +HIRGLKDI E LT NP + E A+ + A ++CPVT EMNG + F + + G V+SE+A KEV + P+ E+D++ L P+ +E++ ++I++R KA++AKK
Sbjct: 37 CSISQTPLKTPVVACELGRMYNKEVVLTRLLDRSSEPGMSHIRGLKDIKELNLTSNPGYRHEGANKGDAYTDHQAAEYICPVTSLEMNGKYPFSFVWTCGCVVSERALKEVKSEVCHKCGQPYQEEDVIPLNPSVDEQDAVKARMISRRAKAKVAKK 193
BLAST of mRNA_Ecto-sp13_S_contig19257.6166.1 vs. uniprot
Match: A0A423SA55_PENVA (Replication termination factor 2 n=4 Tax=Penaeus TaxID=133894 RepID=A0A423SA55_PENVA) HSP 1 Score: 116 bits (291), Expect = 1.100e-27 Identity = 59/149 (39.60%), Postives = 95/149 (63.76%), Query Frame = 1
Query: 7 CAISNEVLREPVAACELGYLYNKDVLISGLLNRDLNPAFNHIRGLKDIVECKLTPNPSFEKEDR----AFDGPEPARFMCPVTLQEMNGSHAFVVLMSTGWVMSEKATKEVGIAGLQEEYGPFTEDDIVGLAPTDEERETRTRQLIAKR 441
CA S L+ P+ ACE+G LYNK+ +++ LL+R + + +HI+GLKDI E LTPNP F++E A+ + A ++CPVT EMNG + F + S G V+SE+A KEV + P++++D+V L P++EE++ ++++R
Sbjct: 37 CAASQTRLKAPIVACEMGRLYNKEEVLTRLLDRSTDASMSHIKGLKDIKELNLTPNPGFKQEGANKGDAYTDHQAAEYICPVTSLEMNGKYRFSFIWSCGCVLSERALKEVKSEVCHKCGKPYSDEDVVPLNPSEEEQDAVKACMLSRR 185
BLAST of mRNA_Ecto-sp13_S_contig19257.6166.1 vs. uniprot
Match: A0A8J5MPL7_HOMAM (Replication termination factor 2-like n=1 Tax=Homarus americanus TaxID=6706 RepID=A0A8J5MPL7_HOMAM) HSP 1 Score: 116 bits (291), Expect = 1.190e-27 Identity = 60/155 (38.71%), Postives = 95/155 (61.29%), Query Frame = 1
Query: 7 CAISNEVLREPVAACELGYLYNKDVLISGLLNRDLNPAFNHIRGLKDIVECKLTPNPSFEKEDR----AFDGPEPARFMCPVTLQEMNGSHAFVVLMSTGWVMSEKATKEVGIAGLQEEYGPFTEDDIVGLAPTDEERETRTRQLIAKREKARLA 459
C+IS L++P+ ACE+G +YNK+ +++ LL+R P +HI+GLKDI E LTPNP + E A+ + A F+CPVT EMNG + F + G V+SE+A KEV + P+ E+D++ L P++EE + +++++R A+ A
Sbjct: 37 CSISQTPLKKPIVACEIGRMYNKEEVLTRLLDRSAEPGMSHIKGLKDIKELNLTPNPGYIHEGANKGDAYTDHQAAEFICPVTSLEMNGKYHFSFVWRCGCVVSERALKEVKSDVCHKCGQPYQEEDVIPLNPSEEEHDAVKARMLSRRALAKAA 191 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig19257.6166.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig19257.6166.1 >prot_Ecto-sp13_S_contig19257.6166.1 ID=prot_Ecto-sp13_S_contig19257.6166.1|Name=mRNA_Ecto-sp13_S_contig19257.6166.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=244bp QVCAISNEVLREPVAACELGYLYNKDVLISGLLNRDLNPAFNHIRGLKDIback to top mRNA from alignment at Ecto-sp13_S_contig19257:3..2681- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig19257.6166.1 ID=mRNA_Ecto-sp13_S_contig19257.6166.1|Name=mRNA_Ecto-sp13_S_contig19257.6166.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2679bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19257:3..2681- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig19257:3..2681- >mRNA_Ecto-sp13_S_contig19257.6166.1 ID=mRNA_Ecto-sp13_S_contig19257.6166.1|Name=mRNA_Ecto-sp13_S_contig19257.6166.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=732bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19257:3..2681- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |