mRNA_Ecto-sp13_S_contig19257.6166.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig19257.6166.1
Unique NamemRNA_Ecto-sp13_S_contig19257.6166.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig19257.6166.1 vs. uniprot
Match: D7FJ42_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJ42_ECTSI)

HSP 1 Score: 308 bits (789), Expect = 5.910e-102
Identity = 153/155 (98.71%), Postives = 154/155 (99.35%), Query Frame = 1
Query:    1 QVCAISNEVLREPVAACELGYLYNKDVLISGLLNRDLNPAFNHIRGLKDIVECKLTPNPSFEKEDRAFDGPEPARFMCPVTLQEMNGSHAFVVLMSTGWVMSEKATKEVGIAGLQEEYGPFTEDDIVGLAPTDEERETRTRQLIAKREKARLAKK 465
            +VCAISNEVLREPVAACELGYLYNKDVLISGLLNRDLNPAFNHIRGLKDIVECKLTPNPSFEKEDRAFDGPEPARFMCPVTLQEMNGSHAFVVLMSTGWVMSEKATKEVGIAGLQEEYGPFTEDDIVGLAPTDEERETRTRQLI KREKARLAKK
Sbjct:   44 KVCAISNEVLREPVAACELGYLYNKDVLISGLLNRDLNPAFNHIRGLKDIVECKLTPNPSFEKEDRAFDGPEPARFMCPVTLQEMNGSHAFVVLMSTGWVMSEKATKEVGIAGLQEEYGPFTEDDIVGLAPTDEERETRTRQLITKREKARLAKK 198          
BLAST of mRNA_Ecto-sp13_S_contig19257.6166.1 vs. uniprot
Match: A0A6V1S5E2_HETAK (Replication termination factor 2 n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1S5E2_HETAK)

HSP 1 Score: 162 bits (409), Expect = 7.450e-45
Identity = 80/140 (57.14%), Postives = 103/140 (73.57%), Query Frame = 1
Query:    1 QVCAISNEVLREPVAACELGYLYNKDVLISGLLNRDLNPAFNHIRGLKDIVECKLTPNPSFEK----EDRAFDGPEPARFMCPVTLQEMNGSHAFVVLMSTGWVMSEKATKEVGIAGLQEEYGPFTE-DDIVGLAPTDEE 405
            + CAISNEVL+EPV ACELG LYNK+ + + LL + LN +F HIRGLKD+VE KLTPNPS+E+    +D       PA+++CPVTL EMNGS  FVV+  TGWV+S++A +EVG   LQ EYGPF   +D+V LAP +E+
Sbjct:   39 KTCAISNEVLQEPVVACELGNLYNKEAIFTCLLEKTLNQSFQHIRGLKDLVEVKLTPNPSYEEKGAEDDIKLKSELPAKYICPVTLIEMNGSQPFVVVWPTGWVLSDRALREVGAPALQAEYGPFRPGEDVVRLAPPEED 178          
BLAST of mRNA_Ecto-sp13_S_contig19257.6166.1 vs. uniprot
Match: A0A836CNB3_9STRA (Rtf2 RING-finger-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CNB3_9STRA)

HSP 1 Score: 160 bits (404), Expect = 2.310e-44
Identity = 75/142 (52.82%), Postives = 104/142 (73.24%), Query Frame = 1
Query:    1 QVCAISNEVLREPVAACELGYLYNKDVLISGLLNRDLNPAFNHIRGLKDIVECKLTPNPSFEKEDRAFDGPEPARFMCPVTLQEMNGSHAFVVLMSTGWVMSEKATKEVGIAGLQEEYGPFTEDDIVGLAPT-DEERETRTR 423
            +VCA+SNE L+EP+  CELGYLYNKD ++S LL+R L+P F H+RGLKD++E KLT N ++++ D      E   +MCP+T QE  G + F ++ STGWV+S++A  EVGI GLQ EYGPF +DD++ LAP  DE+++ R R
Sbjct:   42 KVCAVSNERLQEPIVVCELGYLYNKDAVLSALLDRTLDPTFAHLRGLKDLIEPKLTANRAYDESDS-----ESPPYMCPITFQEFTGRYPFSIIRSTGWVISDRAIAEVGIEGLQAEYGPFVQDDVMRLAPDKDEQQQLRQR 178          
BLAST of mRNA_Ecto-sp13_S_contig19257.6166.1 vs. uniprot
Match: A0A7S3H2A3_9STRA (Replication termination factor 2 n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3H2A3_9STRA)

HSP 1 Score: 150 bits (378), Expect = 3.230e-40
Identity = 71/147 (48.30%), Postives = 101/147 (68.71%), Query Frame = 1
Query:    1 QVCAISNEVLREPVAACELGYLYNKDVLISGLLNRDLNPAFNHIRGLKDIVECKLTPNPSFEKEDRAFDGPEPARFMCPVTLQEMNGSHAFVVLMSTGWVMSEKATKEVGIAGLQEEYGPFTEDDIVGLAPTDEERETRTRQLIAKR 441
            ++C  S E LR P++ CELG LYN + +IS LL++ ++ A +H+R +KD+ + KL PNP++  +D   DG  PA F CP+T  E NG+H FV + STG+V+SEKA KE+GI  LQ EYGPF  +D+V L PT  E E +T Q++ +R
Sbjct:   63 RLCTHSGESLRVPISCCELGNLYNTESIISALLDKKVSAAASHVRNMKDLKQLKLFPNPNYSPDDEV-DGELPAMFSCPITKMEFNGNHPFVAIWSTGYVLSEKAIKELGIEALQSEYGPFQAEDLVKLIPTQFELEAQTAQMVQRR 208          
BLAST of mRNA_Ecto-sp13_S_contig19257.6166.1 vs. uniprot
Match: W7TG44_9STRA (Replication termination factor 2 n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7TG44_9STRA)

HSP 1 Score: 147 bits (372), Expect = 2.500e-39
Identity = 76/165 (46.06%), Postives = 100/165 (60.61%), Query Frame = 1
Query:    1 QVCAISNEVLREPVAACELGYLYNKDVLISGLLNRDLNPAFNHIRGLKDIVECKLTPNPSFEKEDRAFDGPEPA---------------------------RFMCPVTLQEMNGSHAFVVLMSTGWVMSEKATKEVGIAGLQEEYGPFTEDDIVGLAPTDEERET 414
            +VCA+S+E LR+PV ACELG+LYNK+ ++  LL   LNPAF HIRG+KD++ C+ T NP++  E  A    + A                           +++CPV   EMN    FVV+ STGWV+SE+A KEVG A LQ+EYGPF  DD++ L P DEE ET
Sbjct:   41 RVCAVSSERLRDPVVACELGHLYNKEAVLLALLEHTLNPAFAHIRGMKDLIACRFTINPNWTDETAAQASAQEAWAANEAKGEGTNAGTMVGSFAEEGAVSKYICPVARVEMNAKQPFVVIRSTGWVLSERALKEVGAASLQDEYGPFDSDDLIRLVP-DEEEET 204          
BLAST of mRNA_Ecto-sp13_S_contig19257.6166.1 vs. uniprot
Match: A0A7S2RH24_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RH24_9STRA)

HSP 1 Score: 125 bits (314), Expect = 7.930e-31
Identity = 68/174 (39.08%), Postives = 105/174 (60.34%), Query Frame = 1
Query:    1 QVCAISNEVLR--EPVAACELGYLYNKDVLISGLLNRDLNPAFNHIRGLKDIVECKLTPNPSFEKEDRAF-----------------DGPEPARFMCPVTLQEMNGSHAFVVLMSTGW---VMSEKATKEVGIAGLQEEYGPFTEDDIVGLAPTDEERETRTRQLIAKREKARL 456
            + CA+SNE L+   PV A E+G L++K+ ++  LL++++   F+HIRGL+D++EC+   NPS+ +E ++                  D    + + CPV   EMNG H FVVL  T     V+SE+A K+VG   LQEEYGPFT DD++ + P++EER     ++ A+RE+ R+
Sbjct:   43 RTCALSNEALQPGSPVVADEVGNLFSKEAVLKRLLDKNMPVEFSHIRGLRDVIECRFFANPSWSEEGKSSEAAGGTSSSGPGMQWSTDNDSLSPYSCPVASVEMNGRHPFVVLRGTTKPVNVLSERAIKQVGTDALQEEYGPFTGDDVIKVVPSEEERPQLVARMAARREEERI 216          
BLAST of mRNA_Ecto-sp13_S_contig19257.6166.1 vs. uniprot
Match: T1J2E7_STRMM (Replication termination factor 2 n=1 Tax=Strigamia maritima TaxID=126957 RepID=T1J2E7_STRMM)

HSP 1 Score: 123 bits (309), Expect = 3.780e-30
Identity = 72/159 (45.28%), Postives = 97/159 (61.01%), Query Frame = 1
Query:    7 CAISNEVLREPVAACELGYLYNKDVLISGLLNRDLNPAF-NHIRGLKDIVECKLTPNPSFEK-----EDRAFDGPEPARFMCPVTLQEMNGSHAFVVLMSTGWVMSEKATKEVGIAGLQEEYGPFTEDDIVGLAPTDEERETRTRQLIAKREKARLAKK 465
            CA+S E+LR+PV +CELG LYNKD +I  LL++   P    H+R LKD+VE KLT NP++EK      D+  D  + A F+CP+   EMNG + F  L   G V+SE+A K V      +   P+ EDDI+ L  TD+E     R++ A REKA+L KK
Sbjct:   71 CALSQEILRQPVVSCELGRLYNKDAVIEHLLDKTQTPELAKHVRNLKDVVELKLTENPAYEKISNHKGDKYMDH-QMAPFICPIVNMEMNGKYKFCYLRRCGCVLSERAFKLVKSETCHKCGKPYNEDDIITLNGTDDEVVLLRRKMDASREKAKLLKK 228          
BLAST of mRNA_Ecto-sp13_S_contig19257.6166.1 vs. uniprot
Match: UPI001E671F51 (replication termination factor 2-like n=1 Tax=Procambarus clarkii TaxID=6728 RepID=UPI001E671F51)

HSP 1 Score: 123 bits (308), Expect = 3.880e-30
Identity = 65/157 (41.40%), Postives = 99/157 (63.06%), Query Frame = 1
Query:    7 CAISNEVLREPVAACELGYLYNKDVLISGLLNRDLNPAFNHIRGLKDIVECKLTPNPSFEKEDR----AFDGPEPARFMCPVTLQEMNGSHAFVVLMSTGWVMSEKATKEVGIAGLQEEYGPFTEDDIVGLAPTDEERETRTRQLIAKREKARLAKK 465
            C+IS   L+ PV ACELG +YNK+V+++ LL+R   P  +HIRGLKDI E  LT NP +  E      A+   + A ++CPVT  EMNG + F  + + G V+SE+A KEV      +   P+ E+D++ L P+ +E++    ++I++R KA++AKK
Sbjct:   37 CSISQTPLKTPVVACELGRMYNKEVVLTRLLDRSSEPGMSHIRGLKDIKELNLTSNPGYRHEGANKGDAYTDHQAAEYICPVTSLEMNGKYPFSFVWTCGCVVSERALKEVKSEVCHKCGQPYQEEDVIPLNPSVDEQDAVKARMISRRAKAKVAKK 193          
BLAST of mRNA_Ecto-sp13_S_contig19257.6166.1 vs. uniprot
Match: A0A423SA55_PENVA (Replication termination factor 2 n=4 Tax=Penaeus TaxID=133894 RepID=A0A423SA55_PENVA)

HSP 1 Score: 116 bits (291), Expect = 1.100e-27
Identity = 59/149 (39.60%), Postives = 95/149 (63.76%), Query Frame = 1
Query:    7 CAISNEVLREPVAACELGYLYNKDVLISGLLNRDLNPAFNHIRGLKDIVECKLTPNPSFEKEDR----AFDGPEPARFMCPVTLQEMNGSHAFVVLMSTGWVMSEKATKEVGIAGLQEEYGPFTEDDIVGLAPTDEERETRTRQLIAKR 441
            CA S   L+ P+ ACE+G LYNK+ +++ LL+R  + + +HI+GLKDI E  LTPNP F++E      A+   + A ++CPVT  EMNG + F  + S G V+SE+A KEV      +   P++++D+V L P++EE++     ++++R
Sbjct:   37 CAASQTRLKAPIVACEMGRLYNKEEVLTRLLDRSTDASMSHIKGLKDIKELNLTPNPGFKQEGANKGDAYTDHQAAEYICPVTSLEMNGKYRFSFIWSCGCVLSERALKEVKSEVCHKCGKPYSDEDVVPLNPSEEEQDAVKACMLSRR 185          
BLAST of mRNA_Ecto-sp13_S_contig19257.6166.1 vs. uniprot
Match: A0A8J5MPL7_HOMAM (Replication termination factor 2-like n=1 Tax=Homarus americanus TaxID=6706 RepID=A0A8J5MPL7_HOMAM)

HSP 1 Score: 116 bits (291), Expect = 1.190e-27
Identity = 60/155 (38.71%), Postives = 95/155 (61.29%), Query Frame = 1
Query:    7 CAISNEVLREPVAACELGYLYNKDVLISGLLNRDLNPAFNHIRGLKDIVECKLTPNPSFEKEDR----AFDGPEPARFMCPVTLQEMNGSHAFVVLMSTGWVMSEKATKEVGIAGLQEEYGPFTEDDIVGLAPTDEERETRTRQLIAKREKARLA 459
            C+IS   L++P+ ACE+G +YNK+ +++ LL+R   P  +HI+GLKDI E  LTPNP +  E      A+   + A F+CPVT  EMNG + F  +   G V+SE+A KEV      +   P+ E+D++ L P++EE +    +++++R  A+ A
Sbjct:   37 CSISQTPLKKPIVACEIGRMYNKEEVLTRLLDRSAEPGMSHIKGLKDIKELNLTPNPGYIHEGANKGDAYTDHQAAEFICPVTSLEMNGKYHFSFVWRCGCVVSERALKEVKSDVCHKCGQPYQEEDVIPLNPSEEEHDAVKARMLSRRALAKAA 191          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig19257.6166.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FJ42_ECTSI5.910e-10298.71Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6V1S5E2_HETAK7.450e-4557.14Replication termination factor 2 n=1 Tax=Heterosig... [more]
A0A836CNB3_9STRA2.310e-4452.82Rtf2 RING-finger-domain-containing protein n=1 Tax... [more]
A0A7S3H2A3_9STRA3.230e-4048.30Replication termination factor 2 n=1 Tax=Spumella ... [more]
W7TG44_9STRA2.500e-3946.06Replication termination factor 2 n=3 Tax=Monodopsi... [more]
A0A7S2RH24_9STRA7.930e-3139.08Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
T1J2E7_STRMM3.780e-3045.28Replication termination factor 2 n=1 Tax=Strigamia... [more]
UPI001E671F513.880e-3041.40replication termination factor 2-like n=1 Tax=Proc... [more]
A0A423SA55_PENVA1.100e-2739.60Replication termination factor 2 n=4 Tax=Penaeus T... [more]
A0A8J5MPL7_HOMAM1.190e-2738.71Replication termination factor 2-like n=1 Tax=Homa... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig19257contigEcto-sp13_S_contig19257:3..2681 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score309.7
Seed ortholog evalue1.2e-81
Seed eggNOG ortholog2880.D7FJ42
Preferred nameRTFDC1
Model size732
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006274,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010453,GO:0019222,GO:0031494,GO:0034641,GO:0034645,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044424,GO:0044464,GO:0045595,GO:0046483,GO:0050789,GO:0050793,GO:0050794,GO:0060255,GO:0065007,GO:0071170,GO:0071171,GO:0071514,GO:0071515,GO:0071516,GO:0071704,GO:0090304,GO:1901360,GO:1901576,GO:2000241
Exons4
EggNOG free text desc.nuclear DNA replication termination
EggNOG OGsKOG3113@1,KOG3113@2759
Ec32 ortholog descriptionProtein of unknown function DUF602
Ec32 orthologEc-10_000050.1
Cds size732
COG Functional cat.N
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462980.0165234-CDS-Ecto-sp13_S_contig19257:2..3891681462980.0165234-CDS-Ecto-sp13_S_contig19257:2..389Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19257 3..389 -
1681462980.035039-CDS-Ecto-sp13_S_contig19257:1067..12511681462980.035039-CDS-Ecto-sp13_S_contig19257:1067..1251Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19257 1068..1251 -
1681462980.0451372-CDS-Ecto-sp13_S_contig19257:1794..18801681462980.0451372-CDS-Ecto-sp13_S_contig19257:1794..1880Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19257 1795..1880 -
1681462980.0627825-CDS-Ecto-sp13_S_contig19257:2606..26811681462980.0627825-CDS-Ecto-sp13_S_contig19257:2606..2681Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19257 2607..2681 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig19257.6166.1prot_Ecto-sp13_S_contig19257.6166.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig19257 3..2681 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig19257.6166.1

>prot_Ecto-sp13_S_contig19257.6166.1 ID=prot_Ecto-sp13_S_contig19257.6166.1|Name=mRNA_Ecto-sp13_S_contig19257.6166.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=244bp
QVCAISNEVLREPVAACELGYLYNKDVLISGLLNRDLNPAFNHIRGLKDI
VECKLTPNPSFEKEDRAFDGPEPARFMCPVTLQEMNGSHAFVVLMSTGWV
MSEKATKEVGIAGLQEEYGPFTEDDIVGLAPTDEERETRTRQLIAKREKA
RLAKKSSKKSARREKAAASAKAGATKPSSSPPSAGASMVGGQPSKPSAST
GDDAQEDAAGGESKKGKKRRRALEKEAASAAAVAANGASAGPNS
back to top

mRNA from alignment at Ecto-sp13_S_contig19257:3..2681-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig19257.6166.1 ID=mRNA_Ecto-sp13_S_contig19257.6166.1|Name=mRNA_Ecto-sp13_S_contig19257.6166.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2679bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19257:3..2681- (Ectocarpus species13 EcNAP12_S_4_19m)
CAGGTGTGTGCAATAAGCAACGAGGTTCTCCGAGAACCGGTGGCCGCGTG CGAGTTGGGATACCTCTACAACAAGGTAAGGAGCGATTCTCCGGGCAGCA TTCTAGGATGATTAAGATTAACTTTGGAGTCCTATCGCCGGGTGAGACGT GCAAAACCTATTGACAAGGCAGTTTGGTGTCAGGGGGATACGTTTGTGTC GAATTATGAAATTATCGTCCGCCGGATAGGCGAACGGAGGGCTCTAGGCT GCCCGTTGTTGATTTCTACCTTGGCTTGCGGACGGACCCCTCGGATCCAT TTTGTTCAGGGGTACCTTTCCAAGGGTACGTTGGCATGTGACCACACGAG AACTGACCGCGTCAAGTGTTAGATCAGTACAGACAGAAAAAGATTGGATG AAAATCGGAATGACTTTTAGGTGAAGACAGCATCAACAACAGCGCTATTC CGGGGAATCCGTTTGTGTGGCAAGGGCGGGGAGGTTCTTGCGTGCGTTTT GAATTCGTTTCGCGTAGCCGGAATCACTTGAACAAGTGAGAGCGAACATA CCCGGGGTGCGTTTCTTTTCTCCTCATCAGATGTATTTCCCGCGCAAGCG GTCGTTGGCGACAGGCTGATTGCGTGTGTTTCGTTTTCGCCTCCCCCGTT CCAGACCCTTGTCACCGAGAAATATTCGCTGAACGTGATCCAGGTCCTGT TCAGCACGAACCGATCCCTGGATGTGAATAAAAACTCGGGCACCCTTCTT TGTTGCCCGATTTCCGCTTTTTCTCGCGCCCAACCGTTGCTTGTTTTCCA GGATGTCTTGATCTCCGGGTTGCTGAACCGTGACCTCAACCCTGCATTCA ACCACATCCGCGGCCTGAAGGATATCGTCGAGTGCAAGTGAGATACTGCT GTGTTGCCGAGTTTGGCAAGGCCCTTCGCTTTTTTTTTGTGTCAGCAGAG CAGAGTAGAAGGATGGACTTACACCGTGCGCGAATCCTGAAACGCCAAAT TCCTCCAGCTGAAATGTGCAAGTTACGCCGGTGCATTCGCTACCATCGAA AAATCGAAAAATCGACAACGTCGTGTTGGTAGATGAAGTTAGTATCGGCA GGCGATGTAGAGTCTCCCGATGCTTGTTTTTTGTATGTACCTGTTGTTGT CTTAGTTGGACGCTTGCCTCCTCGATGGCGTCGCCAAGCACAAGAACAGC CTGAAGCTCAATATGATTGCGTTTCATCTAGTGGAAGTGTATGATAGAGC TACAATAGCTCATGGTCAACATGAGGAAGACGCACTTTGCAAGACAAGGG CAGCTGAAGTTTTCCCCTTGATGTTAGTCATTTTTAAATAGTTTTTTTGT GCGCGTCGGTGAAGCTGTGCGTATACCTAACCGGAACCCTTTTTCGATTC AAACCATCGGTGTCCTTTATCTTTTGACAGGTTGACACCGAACCCCTCTT TCGAAAAGGAGGACCGGGCGTTTGACGGACCCGAACCGGCCCGTTTCATG TGTCCGGTAACTCTCCAAGAGATGAACGGCTCTCACGCGTTTGTGGTACT CATGAGCACGGGCTGGGTTATGTCGGAAAAGGCGACCAAGGAGGTCGGCA TTGCCGGACTCCAGGTGATAGTTTGCAGTGCTTTGGACGAACTCAACGGA CCTCCTCACACAGCTCTCTCCCAAGGTTTTTGGAAGGATGGCCTTGACAT AAGCGTTTGGGCGCACGGCAACCATGGTTGGCGCAAGTCAATTTTTCGGG GGCGATATGTTTCCCTGTGTGTTATTTAGCAGAGGGCACCACCGTAGTGC TGGCTGCAAATTCTTCATGCTTCATACGTGAACCTAGCCTACCCTGAGTA TCCCTCGAAAGACCTTAGCGCTTACGTACGACAAGGTTGCGGAACACATA GTTGCAGCGCGTGTGAAGTGGTTCAAGTCGCGCAAGTGTGAGGGCATGGC GCCCGAAGTTTGTCATTTTCGGGGCGTTTCGTTTGCACAGTAGTTGCCTC CAGTCAGGGGTTTGTTCTCCCAGACAACTTATTCCGGAGTTATTTTCATG GTCCAGATATGACGATAAAAACCGGACAAGTGCGTGCGCAACGTACGCCA AGTCTGAAGGAGAAGAGCCTTCCCTCAGTCTGGAAGCTTCAGTAGTTTTG CTGTTCACAGTGGTAAGGCCATGTCGTGACTTCGTGCGCAAGGCTTCAAG CCCTCTGAATGCTGTATGGGCCCAATACCCGTATGAGAAAGCAAAGTAGC CTGGCTCAAGCGTTGTTGATGTTCTCATGTCCGCGTATTCAGGAGGAATA CGGTCCCTTTACCGAGGACGACATCGTCGGACTGGCACCGACCGACGAGG AACGCGAAACCCGGACAAGACAGCTCATCGCCAAGAGGGAGAAGGCGCGA CTCGCCAAAAAGTCTTCCAAGAAGAGCGCAAGACGAGAAAAAGCCGCCGC CTCCGCTAAGGCGGGCGCAACCAAGCCATCTTCTTCACCTCCCTCTGCCG GTGCCAGCATGGTTGGCGGCCAACCTAGTAAACCAAGCGCATCCACGGGC GACGACGCGCAAGAGGATGCGGCAGGTGGGGAGAGCAAGAAGGGCAAGAA GAGAAGACGAGCGCTAGAGAAGGAGGCGGCATCGGCGGCGGCCGTCGCTG CTAACGGAGCAAGCGCAGGGCCGAACTCC
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig19257:3..2681-

>mRNA_Ecto-sp13_S_contig19257.6166.1 ID=mRNA_Ecto-sp13_S_contig19257.6166.1|Name=mRNA_Ecto-sp13_S_contig19257.6166.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=732bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19257:3..2681- (Ectocarpus species13 EcNAP12_S_4_19m)
CAGGTGTGTGCAATAAGCAACGAGGTTCTCCGAGAACCGGTGGCCGCGTG
CGAGTTGGGATACCTCTACAACAAGGATGTCTTGATCTCCGGGTTGCTGA
ACCGTGACCTCAACCCTGCATTCAACCACATCCGCGGCCTGAAGGATATC
GTCGAGTGCAAGTTGACACCGAACCCCTCTTTCGAAAAGGAGGACCGGGC
GTTTGACGGACCCGAACCGGCCCGTTTCATGTGTCCGGTAACTCTCCAAG
AGATGAACGGCTCTCACGCGTTTGTGGTACTCATGAGCACGGGCTGGGTT
ATGTCGGAAAAGGCGACCAAGGAGGTCGGCATTGCCGGACTCCAGGAGGA
ATACGGTCCCTTTACCGAGGACGACATCGTCGGACTGGCACCGACCGACG
AGGAACGCGAAACCCGGACAAGACAGCTCATCGCCAAGAGGGAGAAGGCG
CGACTCGCCAAAAAGTCTTCCAAGAAGAGCGCAAGACGAGAAAAAGCCGC
CGCCTCCGCTAAGGCGGGCGCAACCAAGCCATCTTCTTCACCTCCCTCTG
CCGGTGCCAGCATGGTTGGCGGCCAACCTAGTAAACCAAGCGCATCCACG
GGCGACGACGCGCAAGAGGATGCGGCAGGTGGGGAGAGCAAGAAGGGCAA
GAAGAGAAGACGAGCGCTAGAGAAGGAGGCGGCATCGGCGGCGGCCGTCG
CTGCTAACGGAGCAAGCGCAGGGCCGAACTCC
back to top