mRNA_Ecto-sp13_S_contig1924.6160.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1924.6160.1
Unique NamemRNA_Ecto-sp13_S_contig1924.6160.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1924.6160.1 vs. uniprot
Match: A0A6H5JZQ3_9PHAE (MFS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZQ3_9PHAE)

HSP 1 Score: 122 bits (306), Expect = 7.700e-31
Identity = 73/100 (73.00%), Postives = 79/100 (79.00%), Query Frame = 1 
Query:    1 LPVPKATGPLF--LIVPPLGQDETSGSRSVAGEGRSNSGSRSRSSKTGTDVSRGRHSLLEEGQSEAAASSSTRTDVELFERGSLLAAGHVRVLLIIYGIY 294
            LPVP+A G  F  L+VPPLGQD+ SGSRS AG  RSN GS S SS  GT+VSRGRHSLL EGQ E A SSST TDVE F RGSLLAAGHVRVLL++YGIY
Sbjct:  157 LPVPEAAGVQFTSLVVPPLGQDKESGSRSAAGGERSNDGSGSTSSTNGTEVSRGRHSLLAEGQGECATSSSTWTDVEPFNRGSLLAAGHVRVLLVVYGIY 256
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BLAST of mRNA_Ecto-sp13_S_contig1924.6160.1 vs. uniprot
Match: A0A6H5JCE3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCE3_9PHAE)

HSP 1 Score: 106 bits (265), Expect = 1.420e-25
Identity = 65/88 (73.86%), Postives = 68/88 (77.27%), Query Frame = 1 
Query:   34 LIVPPLGQDETSGSRSVAGEGRSNSGSRSRSSKTGTDVSRGRHSLLEEGQSEAAASSSTRTDVELFERGSLLAAGHVRVLLIIYGIYM 297
            L VPPLG+D+ SGS S AGE RS S S S SS  GT+VSRGRHSLLEEGQ E A S ST TDVE F RGSLL AGHVRVLLIIYG YM
Sbjct:  124 LAVPPLGKDKESGSCSAAGEERSKSCSGSTSSTNGTEVSRGRHSLLEEGQGECATSCSTWTDVEPFNRGSLLGAGHVRVLLIIYGTYM 211
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BLAST of mRNA_Ecto-sp13_S_contig1924.6160.1 vs. uniprot
Match: D8LFV4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFV4_ECTSI)

HSP 1 Score: 80.9 bits (198), Expect = 1.830e-16
Identity = 47/58 (81.03%), Postives = 51/58 (87.93%), Query Frame = 1 
Query:  124 SSKTGTDVSRGRHSLLEEGQSEAAASSSTRTDVELFERGSLLAAGHVRVLLIIYGIYM 297
            SS  GT+VS G HSLLEEGQSEAAASSST TD+E F+RGSLLAAGHVRVLL+IYGI M
Sbjct:    2 SSTNGTEVSLGCHSLLEEGQSEAAASSSTWTDLEPFKRGSLLAAGHVRVLLVIYGICM 59
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1924.6160.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5JZQ3_9PHAE7.700e-3173.00MFS domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5JCE3_9PHAE1.420e-2573.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LFV4_ECTSI1.830e-1681.03Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1924contigEcto-sp13_S_contig1924:12805..13711 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score83.6
Seed ortholog evalue5.8e-14
Seed eggNOG ortholog2880.D8LFV4
Model size298
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.major facilitator superfamily
EggNOG OGsKOG2615@1,KOG2615@2759
Cds size297
COG Functional cat.I
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462979.469463-CDS-Ecto-sp13_S_contig1924:12804..130691681462979.469463-CDS-Ecto-sp13_S_contig1924:12804..13069Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1924 12805..13069 -
1681462979.4813187-CDS-Ecto-sp13_S_contig1924:13679..137111681462979.4813187-CDS-Ecto-sp13_S_contig1924:13679..13711Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1924 13680..13711 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1924.6160.1prot_Ecto-sp13_S_contig1924.6160.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1924 12805..13711 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1924.6160.1

>prot_Ecto-sp13_S_contig1924.6160.1 ID=prot_Ecto-sp13_S_contig1924.6160.1|Name=mRNA_Ecto-sp13_S_contig1924.6160.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=99bp
LPVPKATGPLFLIVPPLGQDETSGSRSVAGEGRSNSGSRSRSSKTGTDVS
RGRHSLLEEGQSEAAASSSTRTDVELFERGSLLAAGHVRVLLIIYGIYM
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mRNA from alignment at Ecto-sp13_S_contig1924:12805..13711-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1924.6160.1 ID=mRNA_Ecto-sp13_S_contig1924.6160.1|Name=mRNA_Ecto-sp13_S_contig1924.6160.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=907bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1924:12805..13711- (Ectocarpus species13 EcNAP12_S_4_19m)
CTACCCGTTCCTAAGGCGACCGGTCCCCTGTTGTGAGTGCTTTGAAAATC
GCACATCTACTACGTCGAAAACAAGAACACTGGCGTGCCCCGCGTTAGTC
TATTGTTCCAGTTCTCGCGGCTACGATGCAAGAATGTGCATTGTGACTGT
GAGCCAGCCTGTCGGTTCTGTTTTCTTTTTTTCATTTGAGCTTGGTGGGG
TCCAACCTTAGGGATTGAGGCTTGATTCTTCGATCGAATTCGTGGTACCG
GAACCTGGTTGTCTTCTCAGAATAAACACGAGCGCACAGCGATGTAGCGG
TGACGGTTGAGAAATGTCGCCAATATTGCGCCGCTTAGTGCGACATACAC
GAACCTGGCTGCATGACACCAACCGCGTGCAGGTTGGCAGTCCTATAGAT
ACCGCGCTGGTAGCTAAGACAGGATGATTTCCAGGATCACGCACCCATGC
CGACCGATGTCATGACGCTCGTCGTTGTGCCCGTACTCTCCCACCTCACC
CACCCACCAATAGGGTGCGGCATCGGGCCGCCGATTTTGTATGTAGATGT
TCTCGAGACGCGCTTTCTTCCGGGAACCTCTCAGCCACCGCCGGTGCCCA
CGTCACCTTGTGTTTTGTTTTTTCCAACCCGATCAACACCAGCTTGATCG
TACCCCCTCTCGGGCAAGACGAAACGTCTGGCTCCCGTTCGGTCGCCGGA
GAAGGCAGAAGCAATAGCGGTAGCAGAAGCAGGTCTTCGAAAACCGGGAC
CGACGTATCTCGGGGGCGCCACTCGTTGCTAGAGGAAGGACAGAGCGAGG
CCGCGGCAAGCAGCAGCACCCGGACCGACGTGGAGCTCTTCGAGCGTGGG
AGTTTGCTGGCCGCGGGTCACGTCCGCGTCCTCCTGATAATCTACGGAAT
TTACATG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1924:12805..13711-

>mRNA_Ecto-sp13_S_contig1924.6160.1 ID=mRNA_Ecto-sp13_S_contig1924.6160.1|Name=mRNA_Ecto-sp13_S_contig1924.6160.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=297bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1924:12805..13711- (Ectocarpus species13 EcNAP12_S_4_19m)
CTACCCGTTCCTAAGGCGACCGGTCCCCTGTTCTTGATCGTACCCCCTCT
CGGGCAAGACGAAACGTCTGGCTCCCGTTCGGTCGCCGGAGAAGGCAGAA
GCAATAGCGGTAGCAGAAGCAGGTCTTCGAAAACCGGGACCGACGTATCT
CGGGGGCGCCACTCGTTGCTAGAGGAAGGACAGAGCGAGGCCGCGGCAAG
CAGCAGCACCCGGACCGACGTGGAGCTCTTCGAGCGTGGGAGTTTGCTGG
CCGCGGGTCACGTCCGCGTCCTCCTGATAATCTACGGAATTTACATG
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