mRNA_Ecto-sp13_S_contig192.6136.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig192.6136.1 vs. uniprot
Match: D7FTT8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTT8_ECTSI) HSP 1 Score: 660 bits (1702), Expect = 4.710e-233 Identity = 450/525 (85.71%), Postives = 461/525 (87.81%), Query Frame = 1
Query: 1 MQYLGCCFWLGNPPGESLGVALDAAGGVVFMAGSISEPDEDPDLYIAAFEIATGQVLWTWTHGTIYSDILTDLAFDEENGVLYACGYTRGNFSYALDADPAPEVKLQDMVVLALDPSTQETIWLKTYTSGPLVDRADFAFTITFDRNGVLHVGGTTRGTGFDTDGSAGEDDPDTRPRLLSSRGCNPGANSGSLYPGTHCSTFHSNTNRNPYXXXXXXXXXXXXXXXXXFPSTHCTPLYXXXXXXXXXXXXXXXXRHSSANRSPFYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCSPFYPSTHYSGANRSSCHSSTHYVARXXXXXXXXFDRCTHCGAGTNDGSCYSSTDSGASSSDVPPDICSRSDAFSHDRVTHTVARHAAPHPLSSHRTPDNGTDYTTLSGSRAPVPCPDADTDTARHPGTYRPANSFPFRCHGAPYNARSPTTNGAXXXXXXXPDDVGFATEAYPLALLREPPDAVTHSSSEHCRDRRRGRR 1575
M+YLGCC WLGNPPG++LGVALD AGG+VFMAGS+SEPDEDPDLY+AAFEIATGQVLWTWTHGTIYSDILTDL FDEENGV+YACGYTRG+FSYALDADPAPEVKLQDMVVLALDPSTQETIWLKTYTSGPLVDRADFAFTITFDRNGVLHVGGTTRGTGFDTDGSAGEDDPDTRPRLLSSRGCNP ANSGSLYPGTH STF+S XXXXXXXXXXXXXXXXX PSTHC PL XXXXXXXXXXXXX R+SSANRSPFYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCSPF PSTHY XXXXXXXX CGAGTN GSCYSSTDSGA SSDVPPDICS SDAFSHD+V HTVARHA PH LSSHRTPDNG TTLSGSRAPVPCPDA TD ARHPGTY PA PFRCHGAPYNARSPTTN A XXXXXX DDVGFA EAYPLAL PPDAVTHSSSEHCRDRRRGRR
Sbjct: 1 MRYLGCCSWLGNPPGQALGVALDVAGGMVFMAGSMSEPDEDPDLYMAAFEIATGQVLWTWTHGTIYSDILTDLVFDEENGVIYACGYTRGDFSYALDADPAPEVKLQDMVVLALDPSTQETIWLKTYTSGPLVDRADFAFTITFDRNGVLHVGGTTRGTGFDTDGSAGEDDPDTRPRLLSSRGCNPSANSGSLYPGTHRSTFYSXXXXXXXXXXXXXXXXXXXXXXXXXPSTHCIPLXXXXXXXXXXXXXXYNTRYSSANRSPFYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCSPFDPSTHYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGAGTNGGSCYSSTDSGAGSSDVPPDICSCSDAFSHDKVAHTVARHAGPHSLSSHRTPDNGAHCTTLSGSRAPVPCPDAVTDIARHPGTYGPAGFSPFRCHGAPYNARSPTTNSASXXXXXXXDDVGFAAEAYPLALRPGPPDAVTHSSSEHCRDRRRGRR 525
BLAST of mRNA_Ecto-sp13_S_contig192.6136.1 vs. uniprot
Match: A0A6H5L1V8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1V8_9PHAE) HSP 1 Score: 471 bits (1212), Expect = 2.320e-155 Identity = 411/757 (54.29%), Postives = 426/757 (56.27%), Query Frame = 1
Query: 43 GESLGVALDAAGGVVFMAGSISEPDEDPDLYIAAFEIATGQVLWTWTHGTIYSDILTDLAFDEENGVLYACGYTRGNFSYALDADPAPEVKLQDMVVLALDPSTQETIWLKTYTSGPLVDRADFAFTITFDRNGVLHVGGTTRGTGFDTDGSAGEDDPDTRPRLL----------SSRG----------------------------------------------------------------------------------------CNPG------------------------------------------------ANSGSLYPGTHCSTFHSNTNRNPYXXXXXXXXXXXXXXXXXFPSTHCTPLYXXXXXXXXXXXXXXXXRHSSANRSPFYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCSPFYPSTHYSGANRSSCHSSTHYVARXXXXXXXXFDRCTHC----------------------------------------------------------------------------------------------------GAGTNDGSCYSSTDSGASSSDVPPDICSRSDAFSHDRVTHTVARHAAPHPLSSHRTPDNGTDYTTLSGSRAPVPCPDADTDTARHPGTYRPANSFPFRCHGAPYNARSPTTNGAXXXXXXXPDDVGFATEAYPLALLREPPDAVTHSSSEHCRDRRRGRR 1575
GE+LGVALD AGG+VFMAGS+SEPDE+PDLYIAAFEIATGQV+WTWTHGTIYSD+LTD+AFDEENGVLYACGYTRG+FSYALDADPAPEVKLQDMVVLA DPSTQETIWLKTYTSGPLVDR DFAFTITFDRNGVLHVGG TRGTGFDTDGSAGEDDPDT+PRLL +S G PG ANSGSLYPGTHCSTFHSNTNR+PYXXXXXXXX FPSTHC PLYXXXXXXXXXXXXXXXX ANRSPFYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCSPF PST XXXXXXXX G GTNDGSCYSSTDSGA SSDVPPDICSRSDAFSHD+VTHTVAR A PHPLSSH T DNGT YTTLSGSRAPVPC DADTD AR+PGTYRPA+ PFR HG+PYNARSPTTN AXXXXXXX HSSSEHCRDRRRGRR
Sbjct: 23 GEALGVALDPAGGMVFMAGSMSEPDEEPDLYIAAFEIATGQVVWTWTHGTIYSDVLTDIAFDEENGVLYACGYTRGDFSYALDADPAPEVKLQDMVVLAFDPSTQETIWLKTYTSGPLVDREDFAFTITFDRNGVLHVGGATRGTGFDTDGSAGEDDPDTKPRLLRFVFVSMSLDASDGETLVSYQSLNYRTSRLLSSVMVPDTTEGDLYMGGHDGDTFFGMVYRRERPTLPPTPVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVDATPGRLRTLLPTPFSCEAPLQRAQQLFFLHHTTYPFPLPTSFAPFTPPAKRSANSGSLYPGTHCSTFHSNTNRHPYXXXXXXXXCYTSANHSSFPSTHCIPLYXXXXXXXXXXXXXXXXXXXXANRSPFYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCSPFDPSTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGTGTNDGSCYSSTDSGAGSSDVPPDICSRSDAFSHDKVTHTVARRAGPHPLSSHSTSDNGTHYTTLSGSRAPVPCLDADTDIARYPGTYRPADFSPFRRHGSPYNARSPTTNSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHSSSEHCRDRRRGRR 779 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig192.6136.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig192.6136.1 >prot_Ecto-sp13_S_contig192.6136.1 ID=prot_Ecto-sp13_S_contig192.6136.1|Name=mRNA_Ecto-sp13_S_contig192.6136.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=310bp MQYLGCCFWLGNPPGESLGVALDAAGGVVFMAGSISEPDEDPDLYIAAFEback to top mRNA from alignment at Ecto-sp13_S_contig192:21061..25165+ Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig192.6136.1 ID=mRNA_Ecto-sp13_S_contig192.6136.1|Name=mRNA_Ecto-sp13_S_contig192.6136.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4105bp|location=Sequence derived from alignment at Ecto-sp13_S_contig192:21061..25165+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig192:21061..25165+ >mRNA_Ecto-sp13_S_contig192.6136.1 ID=mRNA_Ecto-sp13_S_contig192.6136.1|Name=mRNA_Ecto-sp13_S_contig192.6136.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=930bp|location=Sequence derived from alignment at Ecto-sp13_S_contig192:21061..25165+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |