mRNA_Ecto-sp13_S_contig19193.6132.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig19193.6132.1
Unique NamemRNA_Ecto-sp13_S_contig19193.6132.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig19193.6132.1 vs. uniprot
Match: A0A6H5LB87_9PHAE (AAA domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5LB87_9PHAE)

HSP 1 Score: 410 bits (1054), Expect = 4.000e-140
Identity = 205/206 (99.51%), Postives = 206/206 (100.00%), Query Frame = 1 
Query:    1 DDPLPSGVSFWQGDFRVHIYRLSHEEPEQEMIDGAGEEEEIAACDQWVLPSASLEGVWESLVLERGVKNHLLEYATSALLFTDKGVSKNVISWNKVVLLHGPPGTGKTSLCKALAHKLSIRLGDRYSTGQLLEINAHSLFSKWFSESGKLVQRLFEHILELADDEDSLVCVLVDEVESLTAARSASMGGNEPSDAVRVVNAVLTQV 618
            DDPLPSGVSFWQGDFRVHIYRLSHEEPEQEMIDGAGEEEEIAACDQWVLPSASLEGVWESLVLERGVKNHLLEYATSALLFTDKGVSKNVISWNKVVLLHGPPGTGKTSLCKALAHKLSIRLGDRYSTGQLLEINAHSLFSKWFSESGKLVQRLFEHILELADDEDSLVCVLVDEVESLTAARSASMGGNEPSDAVRVVNAVLTQ+
Sbjct:   66 DDPLPSGVSFWQGDFRVHIYRLSHEEPEQEMIDGAGEEEEIAACDQWVLPSASLEGVWESLVLERGVKNHLLEYATSALLFTDKGVSKNVISWNKVVLLHGPPGTGKTSLCKALAHKLSIRLGDRYSTGQLLEINAHSLFSKWFSESGKLVQRLFEHILELADDEDSLVCVLVDEVESLTAARSASMGGNEPSDAVRVVNAVLTQI 271
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BLAST of mRNA_Ecto-sp13_S_contig19193.6132.1 vs. uniprot
Match: A0A835Z7T2_9STRA (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7T2_9STRA)

HSP 1 Score: 288 bits (738), Expect = 4.120e-93
Identity = 145/201 (72.14%), Postives = 170/201 (84.58%), Query Frame = 1 
Query:   22 VSFWQGDFRVHIYRLSHEEPEQEMIDGAGEEEEIAACDQWVLPSASLEGVWESLVLERGVKNHLLEYATSALLFTDKGVSKNVISWNKVVLLHGPPGTGKTSLCKALAHKLSIRLGDRYSTGQLLEINAHSLFSKWFSESGKLVQRLFEHILELADDEDSLVCVLVDEVESLTAARSASMGGNEPSDAVRVVNAVLTQVKS 624
            V FW  D  VH ++LS    E+E++DG G+ E++AA DQWVLP+  LEG+WESL+LE  +K  LL+YATSALLF+D+ VSK++ISWN+VVLLHGPPGTGKTSLCKALAHKL+IRLG R+   QLLEINAHSLFSKWFSESGKLV RLF HI ELA+DE +LVC+LVDEVESLT ARSA+M GNEPSDAVRVVNAVLTQ+ S
Sbjct:   75 VPFWHCDPCVHAFQLSPCGVEREVLDGDGDGEDVAAFDQWVLPAQELEGLWESLLLEDTIKAQLLDYATSALLFSDRQVSKHIISWNRVVLLHGPPGTGKTSLCKALAHKLAIRLGGRFQAAQLLEINAHSLFSKWFSESGKLVGRLFGHIAELAEDESTLVCILVDEVESLTTARSAAMSGNEPSDAVRVVNAVLTQIDS 275
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BLAST of mRNA_Ecto-sp13_S_contig19193.6132.1 vs. uniprot
Match: A0A7S3XXY1_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XXY1_HETAK)

HSP 1 Score: 281 bits (720), Expect = 7.630e-92
Identity = 138/199 (69.35%), Postives = 166/199 (83.42%), Query Frame = 1 
Query:   22 VSFWQGDFRVHIYRLSHEEPEQEMIDGAGEEEEIAACDQWVLPSASLEGVWESLVLERGVKNHLLEYATSALLFTDKGVSKNVISWNKVVLLHGPPGTGKTSLCKALAHKLSIRLGDRYSTGQLLEINAHSLFSKWFSESGKLVQRLFEHILELADDEDSLVCVLVDEVESLTAARSASMGGNEPSDAVRVVNAVLTQV 618
            VSFW+    +H+Y+L  E PEQEM+DG   EE++ A +QW LP+  L G+W SLVLE GVK  L+EYA +ALLF+DKGV   +++WN+VVLLHGPPGTGKTSLCKALA KL+IRL DRY+   LLEINAHSLFSKWFSESGKLV RLF+HI EL +DE+SLVCVL+DEVESLTAARS+++GG+EP DAVRVVNAVLTQ+
Sbjct:   75 VSFWRATIFLHVYQLCEEGPEQEMVDG---EEDLPALEQWALPARELHGLWGSLVLEHGVKRDLVEYAQAALLFSDKGVDPALVTWNRVVLLHGPPGTGKTSLCKALAQKLAIRLSDRYNDTHLLEINAHSLFSKWFSESGKLVMRLFQHIQELVEDEESLVCVLIDEVESLTAARSSALGGSEPGDAVRVVNAVLTQL 270
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BLAST of mRNA_Ecto-sp13_S_contig19193.6132.1 vs. uniprot
Match: A0A1S3H9M9_LINUN (pachytene checkpoint protein 2 homolog n=2 Tax=Lingula unguis TaxID=7574 RepID=A0A1S3H9M9_LINUN)

HSP 1 Score: 262 bits (670), Expect = 2.920e-83
Identity = 124/199 (62.31%), Postives = 160/199 (80.40%), Query Frame = 1 
Query:   22 VSFWQGDFRVHIYRLSHEEPEQEMIDGAGEEEEIAACDQWVLPSASLEGVWESLVLERGVKNHLLEYATSALLFTDKGVSKNVISWNKVVLLHGPPGTGKTSLCKALAHKLSIRLGDRYSTGQLLEINAHSLFSKWFSESGKLVQRLFEHILELADDEDSLVCVLVDEVESLTAARSASMGGNEPSDAVRVVNAVLTQV 618
            +  +   F +H+Y+L+ + P  E +D    EE++AA   W+LP+   +G+W+SLV +  +KN LL+YA++ LLF+D+ V  N+ISWN+VVLLHGPPGTGKTSLCKALA KL+IRL DRYS GQL+EIN+HSLFSKWFSESGKLV ++F+ I EL DD ++LVCVL+DEVESLTAAR ASM GNEPSDA+RVVNA+LTQ+
Sbjct:   88 IDLYSAFFLIHVYQLNEDGPASEELD----EEDLAAASHWLLPTRDFDGLWDSLVFDSDIKNQLLQYASTTLLFSDRKVDSNIISWNRVVLLHGPPGTGKTSLCKALAQKLAIRLSDRYSYGQLIEINSHSLFSKWFSESGKLVMKMFQKIQELIDDPEALVCVLIDEVESLTAARKASMSGNEPSDAIRVVNALLTQI 282
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BLAST of mRNA_Ecto-sp13_S_contig19193.6132.1 vs. uniprot
Match: G4ZAM2_PHYSP (AAA domain-containing protein (Fragment) n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4ZAM2_PHYSP)

HSP 1 Score: 254 bits (649), Expect = 4.760e-82
Identity = 121/203 (59.61%), Postives = 160/203 (78.82%), Query Frame = 1 
Query:   16 SGVSFWQGDFRVHIYRLSHEEPEQEMIDGAGEEEEIAACDQWVLPSASLEGVWESLVLERGVKNHLLEYATSALLFTDKGVSKNVISWNKVVLLHGPPGTGKTSLCKALAHKLSIRLGDRYSTGQLLEINAHSLFSKWFSESGKLVQRLFEHILELADDEDSLVCVLVDEVESLTAARSASMGGNEPSDAVRVVNAVLTQVKS 624
            +GV   +    VH+++LSHE P +E  D   ++E +  C Q +LP+ S +G+W+SL+ +  VK ++L+YA +A+LF+D  V+ ++ISWN+VVLLHGPPGTGKTSLCKALAHKLS+RL  RY    LLEINAHSLFSKWFSESGKLV +LF  I EL +DE+SL+CVL+DEVESLTAAR +++ G+EPSDA+RVVNA+LTQ+ S
Sbjct:   46 AGVPRSEAQMFVHVFKLSHEAPAEETAD---DDENVTTCQQTILPACSFDGLWDSLIFDTAVKKNVLDYAMTAMLFSDSKVNPHIISWNRVVLLHGPPGTGKTSLCKALAHKLSVRLSSRYRNAVLLEINAHSLFSKWFSESGKLVMKLFRQIQELVEDEESLICVLIDEVESLTAARKSAVSGSEPSDAIRVVNALLTQLDS 245
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BLAST of mRNA_Ecto-sp13_S_contig19193.6132.1 vs. uniprot
Match: A0A2D4CI98_PYTIN (AAA domain-containing protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CI98_PYTIN)

HSP 1 Score: 258 bits (659), Expect = 9.410e-82
Identity = 127/208 (61.06%), Postives = 162/208 (77.88%), Query Frame = 1 
Query:    1 DDPLPSGVSFWQGDFRVHIYRLSHEEPEQEMIDGAGEEEEIAACDQWVLPSASLEGVWESLVLERGVKNHLLEYATSALLFTDKGVSKNVISWNKVVLLHGPPGTGKTSLCKALAHKLSIRLGDRYSTGQLLEINAHSLFSKWFSESGKLVQRLFEHILELADDEDSLVCVLVDEVESLTAARSASMGGNEPSDAVRVVNAVLTQVKS 624
            D P   GV+ W+ +  + ++RL+ E P  E    A ++E +  C Q +LP+ASL G+WESL+ +  VK  +L+Y T+A+LF+D  V+ ++ISWN+VVLLHGPPGTGKTSLCKALAHKLSIRL DR+ T  L+EINAHSLFSKWFSESGKLV +LF  I EL +D D+LVCVL+DEVESLTAAR A++ G+EPSDA+RVVNAVLTQ+ S
Sbjct:   98 DGPSDVGVAPWEAELVIQVFRLNDEPPVDET---AEDDENVTTCQQLLLPAASLHGLWESLIYDSHVKRTVLDYTTTAMLFSDAHVNPHIISWNRVVLLHGPPGTGKTSLCKALAHKLSIRLSDRFPTAYLVEINAHSLFSKWFSESGKLVMKLFRQIQELVEDPDALVCVLIDEVESLTAARKAAINGSEPSDAIRVVNAVLTQLDS 302
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BLAST of mRNA_Ecto-sp13_S_contig19193.6132.1 vs. uniprot
Match: A0A8B7Z480_ACAPL (pachytene checkpoint protein 2 homolog n=2 Tax=Valvatida TaxID=41166 RepID=A0A8B7Z480_ACAPL)

HSP 1 Score: 258 bits (659), Expect = 1.750e-81
Identity = 126/199 (63.32%), Postives = 158/199 (79.40%), Query Frame = 1 
Query:   22 VSFWQGDFRVHIYRLSHEEPEQEMIDGAGEEEEIAACDQWVLPSASLEGVWESLVLERGVKNHLLEYATSALLFTDKGVSKNVISWNKVVLLHGPPGTGKTSLCKALAHKLSIRLGDRYSTGQLLEINAHSLFSKWFSESGKLVQRLFEHILELADDEDSLVCVLVDEVESLTAARSASMGGNEPSDAVRVVNAVLTQV 618
            +   Q +  +H+++LS+E P  E +     +EEIAA   W+LP+A  EG+W+SLV +  VK+ LL YAT+ LLF+D  V  N+ISWN+VVLLHGPPGTGKTSLCKALA KL IRL DRYS GQL+EIN+HSLFSKWFSESGKLV ++F+ I EL DD+D+LVCVL+DEVESLTAAR +S+ G EPSDA+RVVNA+LTQ+
Sbjct:   98 IDLCQSELHLHVFQLSNEGPGMEEL----ADEEIAAASHWLLPAADFEGIWDSLVFDSCVKSSLLHYATTTLLFSDCKVDPNIISWNRVVLLHGPPGTGKTSLCKALAQKLCIRLSDRYSYGQLIEINSHSLFSKWFSESGKLVMKMFQKIQELIDDQDALVCVLIDEVESLTAARKSSLNGTEPSDAIRVVNALLTQI 292
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BLAST of mRNA_Ecto-sp13_S_contig19193.6132.1 vs. uniprot
Match: A0A8K0P8Q6_LADFU (Uncharacterized protein n=1 Tax=Ladona fulva TaxID=123851 RepID=A0A8K0P8Q6_LADFU)

HSP 1 Score: 252 bits (643), Expect = 2.890e-81
Identity = 122/199 (61.31%), Postives = 159/199 (79.90%), Query Frame = 1 
Query:   22 VSFWQGDFRVHIYRLSHEEPEQEMIDGAGEEEEIAACDQWVLPSASLEGVWESLVLERGVKNHLLEYATSALLFTDKGVSKNVISWNKVVLLHGPPGTGKTSLCKALAHKLSIRLGDRYSTGQLLEINAHSLFSKWFSESGKLVQRLFEHILELADDEDSLVCVLVDEVESLTAARSASMGGNEPSDAVRVVNAVLTQV 618
            VS  + + + H+YRL +  P+ E++D   EEE+I A + WVLPS+   G+WESL+ + G+K +LL +  + LLF+D+ V  N++SWN+VVLLHGPPGTGKTSLCKALA KLSIRL DRY  GQL+EIN+HSLFSKWFSESGKLV ++FE I EL +D+++LVCVL+DEVESL  ARSAS+  +EPSD++RVVNAVLTQ+
Sbjct:   71 VSISELNIKYHVYRLDNAGPQPEVMD---EEEDITAANHWVLPSSDFHGLWESLIYDSGIKENLLSFVETTLLFSDREVDTNIVSWNRVVLLHGPPGTGKTSLCKALAQKLSIRLADRYRHGQLVEINSHSLFSKWFSESGKLVMKMFEKIRELIEDKEALVCVLLDEVESLAHARSASLSSSEPSDSLRVVNAVLTQI 266
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BLAST of mRNA_Ecto-sp13_S_contig19193.6132.1 vs. uniprot
Match: K3WCL2_GLOUD (AAA domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WCL2_GLOUD)

HSP 1 Score: 254 bits (649), Expect = 4.230e-81
Identity = 125/207 (60.39%), Postives = 159/207 (76.81%), Query Frame = 1 
Query:    4 DPLPSGVSFWQGDFRVHIYRLSHEEPEQEMIDGAGEEEEIAACDQWVLPSASLEGVWESLVLERGVKNHLLEYATSALLFTDKGVSKNVISWNKVVLLHGPPGTGKTSLCKALAHKLSIRLGDRYSTGQLLEINAHSLFSKWFSESGKLVQRLFEHILELADDEDSLVCVLVDEVESLTAARSASMGGNEPSDAVRVVNAVLTQVKS 624
            D L      W+    VH+Y+LS E P +   D   ++E ++ C +  LPS SL+G+WESL+ +  VK ++L+YAT+A+LF+D  V+ ++ISWN+VVLLHGPPGTGKTSL KALA KLSIRL +RY    LLEINAHSLFSKWFSESGKLV +LF  I EL +DE+SLVCVL+DEVESLTAAR A++ G+EPSDA+RVVNA+LTQ+ S
Sbjct:   48 DELDGRSRDWEAQLLVHVYKLSEEPPAEATTD---DDENVSTCQELALPSRSLDGLWESLIYDSAVKRNVLDYATTAILFSDANVNPHIISWNRVVLLHGPPGTGKTSLSKALAQKLSIRLSERYPNAYLLEINAHSLFSKWFSESGKLVMKLFHQIQELVEDEESLVCVLIDEVESLTAARKAALSGSEPSDAIRVVNALLTQLDS 251
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BLAST of mRNA_Ecto-sp13_S_contig19193.6132.1 vs. uniprot
Match: UPI0010FCA30A (pachytene checkpoint protein 2 homolog n=2 Tax=Acropora TaxID=6127 RepID=UPI0010FCA30A)

HSP 1 Score: 256 bits (654), Expect = 6.880e-81
Identity = 124/190 (65.26%), Postives = 155/190 (81.58%), Query Frame = 1 
Query:   49 VHIYRLSHEEPEQEMIDGAGEEEEIAACDQWVLPSASLEGVWESLVLERGVKNHLLEYATSALLFTDKGVSKNVISWNKVVLLHGPPGTGKTSLCKALAHKLSIRLGDRYSTGQLLEINAHSLFSKWFSESGKLVQRLFEHILELADDEDSLVCVLVDEVESLTAARSASMGGNEPSDAVRVVNAVLTQV 618
            +H+++L  + P  E +     EE+IAA + W+LPS    GVW+SL+ +  VK  L+ YAT+ LLF+D+GV+ NVISWN+VVLLHGPPGTGKTSLCKALA KLSIRL DRYS GQL+EIN+HSLFSKWFSESGKLV ++F+ I EL DD+D+LVCVL+DEVESLTAAR ++M G EPSDA+RVVNA+LTQ+
Sbjct:   94 IHVFQLHDDGPATEEL-----EEDIAAANHWLLPSEDFHGVWDSLIFDSDVKAQLINYATTTLLFSDRGVNSNVISWNRVVLLHGPPGTGKTSLCKALAQKLSIRLSDRYSYGQLIEINSHSLFSKWFSESGKLVMKMFQKIQELIDDKDALVCVLIDEVESLTAARKSAMQGQEPSDAIRVVNALLTQI 278
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig19193.6132.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5LB87_9PHAE4.000e-14099.51AAA domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A835Z7T2_9STRA4.120e-9372.14P-loop containing nucleoside triphosphate hydrolas... [more]
A0A7S3XXY1_HETAK7.630e-9269.35Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A1S3H9M9_LINUN2.920e-8362.31pachytene checkpoint protein 2 homolog n=2 Tax=Lin... [more]
G4ZAM2_PHYSP4.760e-8259.61AAA domain-containing protein (Fragment) n=1 Tax=P... [more]
A0A2D4CI98_PYTIN9.410e-8261.06AAA domain-containing protein n=1 Tax=Pythium insi... [more]
A0A8B7Z480_ACAPL1.750e-8163.32pachytene checkpoint protein 2 homolog n=2 Tax=Val... [more]
A0A8K0P8Q6_LADFU2.890e-8161.31Uncharacterized protein n=1 Tax=Ladona fulva TaxID... [more]
K3WCL2_GLOUD4.230e-8160.39AAA domain-containing protein n=1 Tax=Globisporang... [more]
UPI0010FCA30A6.880e-8165.26pachytene checkpoint protein 2 homolog n=2 Tax=Acr... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig19193contigEcto-sp13_S_contig19193:148..2893 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score404.8
Seed ortholog evalue2.4e-110
Seed eggNOG ortholog2880.D7FYR6
Preferred nameTRIP13
Model size630
KEGG rclassRC00376,RC00563
KEGG koko:K00413,ko:K01810,ko:K22399
KEGG ReactionR02739,R02740,R03321
KEGG Pathwayko00010,ko00030,ko00190,ko00500,ko00520,ko01100,ko01110,ko01120,ko01130,ko01200,ko02020,ko04260,ko04714,ko04932,ko05010,ko05012,ko05016,map00010,map00030,map00190,map00500,map00520,map01100,map01110,map01120,map01130,map01200,map02020,map04260,map04714,map04932,map05010,map05012,map05016
KEGG ModuleM00001,M00004,M00114,M00151,M00152
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000075,GO:0000166,GO:0000278,GO:0000280,GO:0001556,GO:0001673,GO:0003006,GO:0003674,GO:0003712,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0006139,GO:0006259,GO:0006281,GO:0006302,GO:0006310,GO:0006351,GO:0006366,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007049,GO:0007059,GO:0007088,GO:0007093,GO:0007094,GO:0007127,GO:0007129,GO:0007130,GO:0007131,GO:0007140,GO:0007141,GO:0007143,GO:0007144,GO:0007276,GO:0007281,GO:0007283,GO:0007286,GO:0007292,GO:0007346,GO:0008144,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009889,GO:0009987,GO:0009994,GO:0010467,GO:0010556,GO:0010564,GO:0010639,GO:0010948,GO:0010965,GO:0016043,GO:0016070,GO:0017076,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019953,GO:0021700,GO:0022402,GO:0022412,GO:0022414,GO:0022607,GO:0030071,GO:0030154,GO:0030554,GO:0031323,GO:0031326,GO:0031577,GO:0032501,GO:0032502,GO:0032504,GO:0032553,GO:0032555,GO:0032559,GO:0032774,GO:0033043,GO:0033044,GO:0033045,GO:0033046,GO:0033047,GO:0033048,GO:0033313,GO:0033554,GO:0034641,GO:0034645,GO:0034654,GO:0035639,GO:0035825,GO:0036094,GO:0040020,GO:0042138,GO:0042802,GO:0043073,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044424,GO:0044464,GO:0044703,GO:0045132,GO:0045143,GO:0045786,GO:0045835,GO:0045839,GO:0045841,GO:0045930,GO:0046483,GO:0048232,GO:0048285,GO:0048468,GO:0048469,GO:0048477,GO:0048515,GO:0048519,GO:0048523,GO:0048599,GO:0048609,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0050896,GO:0051128,GO:0051129,GO:0051171,GO:0051252,GO:0051276,GO:0051321,GO:0051445,GO:0051447,GO:0051598,GO:0051704,GO:0051716,GO:0051726,GO:0051783,GO:0051784,GO:0051983,GO:0051985,GO:0060255,GO:0061982,GO:0065007,GO:0070192,GO:0070193,GO:0071173,GO:0071174,GO:0071695,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:0090305,GO:0097159,GO:0097367,GO:0097659,GO:0098813,GO:0140013,GO:0140110,GO:1901265,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1901987,GO:1901988,GO:1901990,GO:1901991,GO:1902099,GO:1902100,GO:1903046,GO:1903047,GO:1903506,GO:1905818,GO:1905819,GO:2000241,GO:2000242,GO:2000816,GO:2001141,GO:2001251
Exons5
EggNOG free text desc.homologous recombination
EggNOG OGsCOG0464@1,KOG0744@2759
Ec32 ortholog descriptionAAA ATPase domain
Ec32 orthologEc-19_002220.1
EC5.3.1.9
Cds size630
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03036,ko04147
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462977.2767031-CDS-Ecto-sp13_S_contig19193:147..3151681462977.2767031-CDS-Ecto-sp13_S_contig19193:147..315Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19193 148..315 +
1681462977.2883694-CDS-Ecto-sp13_S_contig19193:823..9391681462977.2883694-CDS-Ecto-sp13_S_contig19193:823..939Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19193 824..939 +
1681462977.2971997-CDS-Ecto-sp13_S_contig19193:1288..14301681462977.2971997-CDS-Ecto-sp13_S_contig19193:1288..1430Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19193 1289..1430 +
1681462977.3066094-CDS-Ecto-sp13_S_contig19193:2178..22771681462977.3066094-CDS-Ecto-sp13_S_contig19193:2178..2277Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19193 2179..2277 +
1681462977.3227122-CDS-Ecto-sp13_S_contig19193:2788..28931681462977.3227122-CDS-Ecto-sp13_S_contig19193:2788..2893Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19193 2789..2893 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig19193.6132.1prot_Ecto-sp13_S_contig19193.6132.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig19193 148..2893 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig19193.6132.1

>prot_Ecto-sp13_S_contig19193.6132.1 ID=prot_Ecto-sp13_S_contig19193.6132.1|Name=mRNA_Ecto-sp13_S_contig19193.6132.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=210bp
DDPLPSGVSFWQGDFRVHIYRLSHEEPEQEMIDGAGEEEEIAACDQWVLP
SASLEGVWESLVLERGVKNHLLEYATSALLFTDKGVSKNVISWNKVVLLH
GPPGTGKTSLCKALAHKLSIRLGDRYSTGQLLEINAHSLFSKWFSESGKL
VQRLFEHILELADDEDSLVCVLVDEVESLTAARSASMGGNEPSDAVRVVN
AVLTQVKSR*
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mRNA from alignment at Ecto-sp13_S_contig19193:148..2893+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig19193.6132.1 ID=mRNA_Ecto-sp13_S_contig19193.6132.1|Name=mRNA_Ecto-sp13_S_contig19193.6132.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2746bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19193:148..2893+ (Ectocarpus species13 EcNAP12_S_4_19m)
GACGACCCGCTGCCCTCCGGCGTGAGCTTCTGGCAAGGCGACTTCCGGGT
GCACATCTACCGCCTGTCTCACGAAGAGCCGGAGCAGGAGATGATAGACG
GGGCGGGGGAGGAGGAAGAGATAGCGGCGTGCGACCAGTGGGTCTTGCCT
TCGGCAAGCTTGGAAGGGGTGAGTGTGGTGTTGCTTGTGGCCGCCGCGCG
CTTGGAGACTGTTCTGTTTGTTATACATGAACCGATCGTATTTGTTCGTA
TGCTTGAAGCAGGCGTTCTTCTGCTCCTTCTGCTCCTCTCTCTGTGTGGG
TGGCATGGTCCCCAAGCAAGAATCCTAAGAGCATCAGGTACCTCGCTCAC
ACTACGTTACGGTGAACCCAAACCCATTGGTGTCGTATCCGTGGATTGGG
TCAGACGCTCGCCACTTTTCTGCTGAGCCCTGGCCCTATCCCCCCGCGGG
GAGGGATACTTGTGCCATCAGGTGGTCTGAAGAACTGCAGCCCTGCCCCT
AATCCCAACCCCAACCCCAACCCCAACCCCTATCTCAAGCTCAATCCCAA
TCCCAACCCCGATCTCAATCCCAATTCCTATCTCAAGCTCAATCCCAATC
CCAACCCCGATCTCAATCCCAATTCCTATCTCAATCTCGATCTCAATCCC
AATCCCAATGCCAATCCCAATCCCAGGTGTGGGAAAGCTTGGTCCTCGAG
CGGGGAGTGAAGAACCACCTCCTGGAGTACGCGACCTCGGCCCTGCTCTT
CACGGACAAGGGTGTCAGCAAGAACGTCATCTCGTGGAACAAGTGAGCCG
TCTCTCTTCATTTTTTTTTTTGTTTACGATCGTGGGCGTTGTCGCATCGT
CCCAAGTACGACGCATGCACGCCCACGGCCGTCGTTGCACGTGTGGTCGA
ACCGAGTGAAGTCGGATCCTACCGTTAATCAGGTGCTCGATCCGGTGTTA
CGCTCGGGGAGCAAGCAAGCGTGGAACGGTAGCCGATTCCACGATCAAGC
GGGGAAGTCGGATTCAACTTTCTAAAACCAAGTGATACCACGCGTTATTC
CATCGGGCGCTTGTAACTTTCTGGACTGCGAATATCACTGCTAAGCTGCT
AAGATAATCATCCTCTGTGCTGACAACGACGCACGGAACAGGGTGGTTTT
GCTTCACGGCCCCCCCGGCACCGGCAAGACCTCCCTGTGCAAGGCCCTGG
CGCACAAGCTCAGCATCCGCCTCGGCGACAGGTACTCCACCGGGCAGCTG
CTCGAGATCAACGCTCACAGCCTCTTTAGCAAGGTGAGGCACCAGCGATT
CTACTCATGTTCTTGTTGATCTGCTCCAAATCAACGCTCACAGCCTCTTT
TGCAAGGTGAGGCAACGGCGCCTCCACCCGTGTTCTCTTTAGGACGGCGA
GGCACGAGGACCCCCCCCCCCCACGCGTTCTTGCAGTTGTATTCCAAGAG
GTTGGTGTGCTGGTGCGCAATTCCACTGGAGCCGACTTCCCCCCGTGTGT
GTGAACATTACCTGAGGCTGCGAGCAGGGACATGGTACGATTCGCTCTCG
GGCTTCGTGAATCCTGACTCTGACGACCGAAAGTACGAGCCCGATCCCGC
CCCCCCCCTGCCTTCGCCTTCGCGGGGCCCCCGGCGCCGAAACTGCTTGT
TTCGTCGGACGCGGTTCACTATTACTCTGAAGATTCATTCCACCAGGGCT
CCGCCGAATGAAGATGTTCTCCGTTCTCCCCTGTCGTGCGTGGCTTTGGT
GCACCTCTTGCACTGAATGTGTGGTGCCTCTGATACGGAGTGGTGTTGCT
TGCGCGGAAAGATGGATGGATCCCGGCCCCCGAGAGCACCCCCCCCCCGG
GACTGTTTCCGCGGACTATGTTACTTGCCTTCTCTTCGACATTCCAACCC
CGTGTAACTTGTTCTTTTCTACTCCTCCTCTCTTTCTCTCCCCCTCCGTC
TCTCTCTCTCTCTTTCTCTCTCTCTCTCTCTCTCTGTTCCGCTCCTCTGT
CATGCCTCTTTCTCCGTGGCGATTCCGACAGTGGTTCTCGGAGAGCGGAA
AGCTCGTGCAACGGCTGTTCGAGCACATCTTGGAGCTGGCGGACGACGAG
GACAGCCTGGTGTGCGTTCTCGTAGACGAGGTAAGGAGTGCGAATCAACC
AAATCTACCAAATCTACGGCGCTGCAGAATTCACCATGCGAAAGCATCTT
TCGCGAAGCGTTGTGACTTGGTGTGACGTTCTCGTGGACGAAGTATAGTA
TAAACCGCAATACTCAACCATGAAGCAGGATGATTTTGTTGTGACGTTTT
GTAGGAGAGGCAGTTACAAATCTACCAAATCTACCACATCTGCGATGCTG
CAGCATCCACCAAACGCCGGCAACGTTCTGCGATGAAGCGGTACGATAGG
GAGCGATCCTGCCGCAACACGCTCGCGGAGGCTGTCCGAGTTTCCACTTG
CCGCGGATTCATTTCCAGGTCTCTCTGTTGCCGTTATGAGTGATTCTACG
CCCCGCCCTCCACCCCAAACGTTGCCTGGGCTGGCGAAACCCGGCAAATC
GCTCAGCCCCGTCAGTGTAGGCATGCGCGATCAACGGTCTTACAACTACG
GCAGGAACCTACATGAATATTCTCCCCCCCCCCGATACCAGGTGGAAAGC
CTGACGGCCGCGAGATCGGCGTCAATGGGGGGCAACGAACCCTCGGATGC
CGTGCGAGTGGTGAATGCGGTGCTCACCCAGGTAAAGAGCCGTTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig19193:148..2893+

>mRNA_Ecto-sp13_S_contig19193.6132.1 ID=mRNA_Ecto-sp13_S_contig19193.6132.1|Name=mRNA_Ecto-sp13_S_contig19193.6132.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=630bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19193:148..2893+ (Ectocarpus species13 EcNAP12_S_4_19m)
GACGACCCGCTGCCCTCCGGCGTGAGCTTCTGGCAAGGCGACTTCCGGGT
GCACATCTACCGCCTGTCTCACGAAGAGCCGGAGCAGGAGATGATAGACG
GGGCGGGGGAGGAGGAAGAGATAGCGGCGTGCGACCAGTGGGTCTTGCCT
TCGGCAAGCTTGGAAGGGGTGTGGGAAAGCTTGGTCCTCGAGCGGGGAGT
GAAGAACCACCTCCTGGAGTACGCGACCTCGGCCCTGCTCTTCACGGACA
AGGGTGTCAGCAAGAACGTCATCTCGTGGAACAAGGTGGTTTTGCTTCAC
GGCCCCCCCGGCACCGGCAAGACCTCCCTGTGCAAGGCCCTGGCGCACAA
GCTCAGCATCCGCCTCGGCGACAGGTACTCCACCGGGCAGCTGCTCGAGA
TCAACGCTCACAGCCTCTTTAGCAAGTGGTTCTCGGAGAGCGGAAAGCTC
GTGCAACGGCTGTTCGAGCACATCTTGGAGCTGGCGGACGACGAGGACAG
CCTGGTGTGCGTTCTCGTAGACGAGGTGGAAAGCCTGACGGCCGCGAGAT
CGGCGTCAATGGGGGGCAACGAACCCTCGGATGCCGTGCGAGTGGTGAAT
GCGGTGCTCACCCAGGTAAAGAGCCGTTGA
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