mRNA_Ecto-sp13_S_contig19179.6124.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig19179.6124.1
Unique NamemRNA_Ecto-sp13_S_contig19179.6124.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig19179.6124.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig19179contigEcto-sp13_S_contig19179:429..1378 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size669
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionC2H2 zinc finger protein
Ec32 orthologEc-07_000570.1
Cds size387
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462976.7661364-UTR-Ecto-sp13_S_contig19179:428..7101681462976.7661364-UTR-Ecto-sp13_S_contig19179:428..710Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig19179 429..710 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462976.7837636-CDS-Ecto-sp13_S_contig19179:710..9291681462976.7837636-CDS-Ecto-sp13_S_contig19179:710..929Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19179 711..929 -
1681462976.7997015-CDS-Ecto-sp13_S_contig19179:1210..13781681462976.7997015-CDS-Ecto-sp13_S_contig19179:1210..1378Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19179 1211..1378 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig19179.6124.1prot_Ecto-sp13_S_contig19179.6124.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig19179 711..1378 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig19179.6124.1

>prot_Ecto-sp13_S_contig19179.6124.1 ID=prot_Ecto-sp13_S_contig19179.6124.1|Name=mRNA_Ecto-sp13_S_contig19179.6124.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=129bp
VTARGEGRHGSGPGLGGWGAEKLAAGPATREQCPQCGAVFGDVNTLLNHV
ERFHPKATTVTRIPAPSRASVSSSSTMLESNGAGIGRDSARVRPSLARKG
STYEPDEGPVLTVYPPGESVAPTRPSLP*
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mRNA from alignment at Ecto-sp13_S_contig19179:429..1378-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig19179.6124.1 ID=mRNA_Ecto-sp13_S_contig19179.6124.1|Name=mRNA_Ecto-sp13_S_contig19179.6124.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=950bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19179:429..1378- (Ectocarpus species13 EcNAP12_S_4_19m)
GTGACGGCGCGAGGAGAAGGCAGGCACGGCAGTGGGCCGGGGTTGGGCGG
ATGGGGAGCGGAGAAACTTGCGGCGGGGCCCGCCACGAGAGAGCAGTGTC
CCCAGTGCGGAGCGGTGTTTGGGGACGTGAACACCCTGCTCAACCACGTT
GAGCGTTTCCACCCCAAGGTATACGTGCATTCCTGTATTTCTTTCGCTTT
TCTCCTATCAGATTAGGGACAACATTTTTAGCGAGAAAGGGTCTTCCCCC
CTAGCAAGAACGGGATACGAGGCGGCTCAACCGTTGCCTCATCTACTCCG
GCTGTGAATGAGTCGTTCAACCGAACAAGATCATTCCCTGATCCCGCCGC
ATACTAATTACGTCAGCGATACACCACCAAATCATCTCCGACGAGCTAGA
AACGAATCTCCCGCTCCGGCTCGTTCCACCACCCTCCTGCCCCACCCAGG
CCACAACAGTAACAAGGATCCCTGCACCAAGTAGGGCATCCGTGTCGTCA
TCATCGACGATGCTAGAGTCAAATGGTGCCGGCATCGGTAGGGACAGCGC
TCGCGTCAGACCATCCCTTGCCCGGAAAGGCAGCACCTACGAGCCGGACG
AGGGCCCTGTCCTCACGGTTTATCCCCCTGGCGAAAGCGTTGCACCGACC
AGGCCATCCTTACCCTAGCCGTTCCTGCGTATGGTTTTAGGGTTTGAATT
TCGCTGTTGCGACTTTCTACCGTGCTGAACTGATTTTGGATGGGTCCGGA
ATGTAATATAGTAGTTCGATGCATAGACGTCAAGCATGGGTCGTGGGATC
CTTCTCCTCGAGCCTGTTTCGAACGGTGGAGTGCTCGACATCTCAAACGG
ATGAGGGGTCCGATGTCGTTGAGCTGAAGTCTCTGGGCGGCTCGTGGCCG
GATGTGAGGAAACCTGTGGCAACGACGCGTGATGCCAGCGTTGGTGCTGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig19179:429..1378-

>mRNA_Ecto-sp13_S_contig19179.6124.1 ID=mRNA_Ecto-sp13_S_contig19179.6124.1|Name=mRNA_Ecto-sp13_S_contig19179.6124.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=387bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19179:429..1378- (Ectocarpus species13 EcNAP12_S_4_19m)
GTGACGGCGCGAGGAGAAGGCAGGCACGGCAGTGGGCCGGGGTTGGGCGG
ATGGGGAGCGGAGAAACTTGCGGCGGGGCCCGCCACGAGAGAGCAGTGTC
CCCAGTGCGGAGCGGTGTTTGGGGACGTGAACACCCTGCTCAACCACGTT
GAGCGTTTCCACCCCAAGGCCACAACAGTAACAAGGATCCCTGCACCAAG
TAGGGCATCCGTGTCGTCATCATCGACGATGCTAGAGTCAAATGGTGCCG
GCATCGGTAGGGACAGCGCTCGCGTCAGACCATCCCTTGCCCGGAAAGGC
AGCACCTACGAGCCGGACGAGGGCCCTGTCCTCACGGTTTATCCCCCTGG
CGAAAGCGTTGCACCGACCAGGCCATCCTTACCCTAG
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