mRNA_Ecto-sp13_S_contig19176.6123.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig19176.6123.1
Unique NamemRNA_Ecto-sp13_S_contig19176.6123.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig19176.6123.1 vs. uniprot
Match: A0A6H5K3K8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3K8_9PHAE)

HSP 1 Score: 48.5 bits (114), Expect = 1.650e-5
Identity = 25/43 (58.14%), Postives = 32/43 (74.42%), Query Frame = 1 
Query:    1 QRRYEEAEALYERSEVMLEKAVGLDHPDVATVLHNRAGALIAQ 129
            Q +Y EAE LYERS+ + EK +GL+HPDVA+ L+NR   L AQ
Sbjct:   18 QGKYMEAEPLYERSQAIQEKVLGLEHPDVASSLNNRVELLRAQ 60
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BLAST of mRNA_Ecto-sp13_S_contig19176.6123.1 vs. uniprot
Match: A0A6H5K5H9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5H9_9PHAE)

HSP 1 Score: 50.1 bits (118), Expect = 6.170e-5
Identity = 24/37 (64.86%), Postives = 30/37 (81.08%), Query Frame = 1 
Query:   10 YEEAEALYERSEVMLEKAVGLDHPDVATVLHNRAGAL 120
            Y EA+ LYERS+ + +K +G DHPDVATVL+NRAG L
Sbjct:  208 YAEAKPLYERSQAIRKKVLGPDHPDVATVLNNRAGLL 244
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig19176.6123.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K3K8_9PHAE1.650e-558.14Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K5H9_9PHAE6.170e-564.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig19176contigEcto-sp13_S_contig19176:46..708 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size303
Hectar predicted targeting categoryother localisation
Exons3
Cds size210
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462976.6451073-UTR-Ecto-sp13_S_contig19176:45..901681462976.6451073-UTR-Ecto-sp13_S_contig19176:45..90Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig19176 46..90 -
1681462976.6876855-UTR-Ecto-sp13_S_contig19176:660..7081681462976.6876855-UTR-Ecto-sp13_S_contig19176:660..708Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig19176 661..708 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462976.655444-CDS-Ecto-sp13_S_contig19176:90..961681462976.655444-CDS-Ecto-sp13_S_contig19176:90..96Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19176 91..96 -
1681462976.665695-CDS-Ecto-sp13_S_contig19176:217..3401681462976.665695-CDS-Ecto-sp13_S_contig19176:217..340Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19176 218..340 -
1681462976.675467-CDS-Ecto-sp13_S_contig19176:579..6601681462976.675467-CDS-Ecto-sp13_S_contig19176:579..660Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19176 580..660 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig19176.6123.1prot_Ecto-sp13_S_contig19176.6123.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig19176 91..660 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig19176.6123.1

>prot_Ecto-sp13_S_contig19176.6123.1 ID=prot_Ecto-sp13_S_contig19176.6123.1|Name=mRNA_Ecto-sp13_S_contig19176.6123.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=70bp
MLEKAVGLDHPDVATVLHNRAGALIAQENHKEAFPLLERALTIRTKKLGE
NHPDTVGTRNRLEFVREKV*
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mRNA from alignment at Ecto-sp13_S_contig19176:46..708-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig19176.6123.1 ID=mRNA_Ecto-sp13_S_contig19176.6123.1|Name=mRNA_Ecto-sp13_S_contig19176.6123.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=663bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19176:46..708- (Ectocarpus species13 EcNAP12_S_4_19m)
CAGAGGAGGTATGAGGAAGCCGAGGCGCTGTATGAGCGGTCAGAGGTGAT
GCTCGAAAAGGCCGTTGGTTTGGATCACCCGGATGTGGCCACGGTGCTCC
ACAACCGGGCTGGGGCGTTGATAGCCCAGGTGAGAACCGAGATAGCTTTC
CGGGATTGTTTGGTGGCGTCCTCAGGACGATTTTGGACAAGAAGGATAGA
CGCTCCATTGTCTTACCGTGAACTGGCTAAAGCCAGCGGGCTTAGTGAAC
GAAAGGTCACATCAGTTGCCAATGGCTTGGACGAAAATAGTAAATCGCGG
CAGTTGTTAAACCGTTTGCGCACCCAATTTGGCTCTCAACCCTGCGTCTC
AATCTCAATGGCCCGCAGGAGAATCACAAGGAGGCATTTCCACTACTGGA
GAGGGCCCTCACAATCCGTACGAAGAAGCTTGGAGAGAACCACCCGGACA
CGGTTGGGACTCGGAACCGCCTGGAATTTGTTCGAGAGAAGGTTCGTGCA
CACTTGGGGCCATCTTGTAGGCAAGCCTCATGCACGACGATCGCGCCAAG
GCCTGGCACTATAGCACAACTGAGAATACTATGGTCTGGTCTGTGTACTT
CGTGTGCTGCAGGTGTGAGGACGAGGTGGAAGAAACTGGCTGCGTTAGCA
GTCACTGCCGACG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig19176:46..708-

>mRNA_Ecto-sp13_S_contig19176.6123.1 ID=mRNA_Ecto-sp13_S_contig19176.6123.1|Name=mRNA_Ecto-sp13_S_contig19176.6123.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=210bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19176:46..708- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCTCGAAAAGGCCGTTGGTTTGGATCACCCGGATGTGGCCACGGTGCT
CCACAACCGGGCTGGGGCGTTGATAGCCCAGGAGAATCACAAGGAGGCAT
TTCCACTACTGGAGAGGGCCCTCACAATCCGTACGAAGAAGCTTGGAGAG
AACCACCCGGACACGGTTGGGACTCGGAACCGCCTGGAATTTGTTCGAGA
GAAGGTGTGA
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