mRNA_Ecto-sp13_S_contig19114.6090.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig19114.6090.1
Unique NamemRNA_Ecto-sp13_S_contig19114.6090.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig19114.6090.1 vs. uniprot
Match: D7G494_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G494_ECTSI)

HSP 1 Score: 406 bits (1044), Expect = 1.210e-134
Identity = 231/302 (76.49%), Postives = 244/302 (80.79%), Query Frame = 3 
Query:  156 RGVGEPSEFGFACGGDKCKLKMTEEEKAEAIRHRDVVRARAAAGEAGTPGPCSAGDNCVAKEGSQAIVTKCPHGNGRHFACARVACSPDCADSAGGEEGSGDPKTPGNSDAGSDASALDMSGGDDIAAAATPTGARQRTSLEATPASSRRTSGEGVGAGRIMMPRNKAS-TPSKQXXXXXKTGSVVLPLEDIKVCIADALTQLFGDKKIVSALVDKMAGTASQAKATNAVVAAINTISKEFIAAAKDAGKEACATHLKAPLTDLAKTQETAAKLWKETSVEAANKWKSNAQAVAKGSGQVMT 1058
            RGVGEPSEFGFACGGD CKLKMTEEEKA AIRHRDVVRARAAAGEAGT GPCSAGDNCVAKEGSQAIVT+CPHGNGRHFACARVACSPDC +  GG E  GDPKT GNSDA  +ASALD SGGDDIAAAATPT ARQRTS          TSGEGVGAGR M  RNK+S TPSKQ     K GSVVLPLE+IK CIADALT  FGDKKIV  LVDKMAGTASQAKA +AV+ AI   S+EFI AAK+AGKEACA +LKAPLTDLAK Q  AA  WK+ SVEAA KWK+ AQA+AK S Q  T
Sbjct:   53 RGVGEPSEFGFACGGDMCKLKMTEEEKAGAIRHRDVVRARAAAGEAGTEGPCSAGDNCVAKEGSQAIVTQCPHGNGRHFACARVACSPDCGE--GGSEDEGDPKTAGNSDAWKNASALDNSGGDDIAAAATPTAARQRTSXXXXXXXXXXTSGEGVGAGRTMRLRNKSSSTPSKQAATPSKAGSVVLPLEEIKFCIADALTHAFGDKKIVGTLVDKMAGTASQAKAMSAVMTAITANSREFITAAKEAGKEACAQYLKAPLTDLAKAQTDAANKWKDNSVEAATKWKTTAQALAKSSAQKST 352
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BLAST of mRNA_Ecto-sp13_S_contig19114.6090.1 vs. uniprot
Match: D7G4G4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4G4_ECTSI)

HSP 1 Score: 294 bits (752), Expect = 1.680e-93
Identity = 190/285 (66.67%), Postives = 201/285 (70.53%), Query Frame = 3 
Query:  219 MTEEEKAEAIRHRDVVRARAAAGEAGTPGPCSAGDNCVAKEGSQAIVTKCPHGNGRHFACARVACSPDC----ADSAGGEEGSGDPKTPGNSDAGSDASALDMSGGDDIAAAATPTGARQRTSLEATPASSRRTSGEGVGAGRIMMPRNKAS-TPSKQXXXXXKTGSVVLPLEDIKVCIADALTQLFGDKKIVSALVDKMAGTASQAKATNAVVAAINTISKEFIAAAKDAGKEACATHLKAPLTDLAKTQETAAKLWKETSVEAANKWKSNAQAVAKGSGQVMT 1058
            MTEEEKA AIRHRDVVRARAAAGEAGT GPCSAGDNCVAKE        C      H A   +  +       A     +   GDPKT GNSDA  +ASALD S GDDIAAAATPT ARQRTS EAT  SSRRTSGEGVGAGR M  RNK+S TPSKQ     K GSVVLPLE+IKVCIADALT +FGDKKIV  LVDKMAGTASQAKA  AVV AIN  S EFI AAK+AGKEACA HLKAPLTDLAK Q  AA  WK+ SVE      + AQA+AK S Q  T
Sbjct:    1 MTEEEKAGAIRHRDVVRARAAAGEAGTEGPCSAGDNCVAKE--------CFSRRSSHNALTAMGGTSRAPAWLAPLTAAKVDEGDPKTAGNSDAWKNASALDNSAGDDIAAAATPTAARQRTSPEATSTSSRRTSGEGVGAGRTMRLRNKSSSTPSKQTATPSKAGSVVLPLEEIKVCIADALTHVFGDKKIVGTLVDKMAGTASQAKAMRAVVTAINANSSEFITAAKEAGKEACAQHLKAPLTDLAKAQTDAANKWKDNSVEXXXXXXTTAQALAKSSAQKST 277
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BLAST of mRNA_Ecto-sp13_S_contig19114.6090.1 vs. uniprot
Match: A0A6H5KY47_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY47_9PHAE)

HSP 1 Score: 136 bits (342), Expect = 2.310e-36
Identity = 66/71 (92.96%), Postives = 68/71 (95.77%), Query Frame = 3 
Query:  219 MTEEEKAEAIRHRDVVRARAAAGEAGTPGPCSAGDNCVAKEGSQAIVTKCPHGNGRHFACARVACSPDCAD 431
            MTEEEKAEAIR RDVVRARAA+G AGTPGPCSAGDNCVAKEGSQAIVTKCPHGNGRHFACARVACSPDC +
Sbjct:    1 MTEEEKAEAIRQRDVVRARAASGGAGTPGPCSAGDNCVAKEGSQAIVTKCPHGNGRHFACARVACSPDCGE 71
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BLAST of mRNA_Ecto-sp13_S_contig19114.6090.1 vs. uniprot
Match: D7FZU7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZU7_ECTSI)

HSP 1 Score: 118 bits (296), Expect = 1.260e-29
Identity = 68/91 (74.73%), Postives = 74/91 (81.32%), Query Frame = 3 
Query:  639 MMPRNKAS-TPSKQXXXXXKTGSVVLPLEDIKVCIADALTQLFGDKKIVSALVDKMAGTASQAKATNAVVAAINTISKEFIAAAKDAGKEA 908
            M  RNK+S TPSKQ     K GSVVLPLE+I+VCIADALT +FGDKKIV  LVDKMAGTASQAKA +AVV AIN  S+EFI AAKDAGKEA
Sbjct:    1 MRLRNKSSSTPSKQAATPSKAGSVVLPLEEIQVCIADALTHVFGDKKIVGTLVDKMAGTASQAKAMSAVVTAINANSREFITAAKDAGKEA 91
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig19114.6090.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7G494_ECTSI1.210e-13476.49Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G4G4_ECTSI1.680e-9366.67Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KY47_9PHAE2.310e-3692.96Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FZU7_ECTSI1.260e-2974.73Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig19114contigEcto-sp13_S_contig19114:160..2771 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size1058
Hectar predicted targeting categoryother localisation
Exons5
Cds size840
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig19114.6090.1prot_Ecto-sp13_S_contig19114.6090.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig19114 378..2771 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462974.2074575-UTR-Ecto-sp13_S_contig19114:159..3771681462974.2074575-UTR-Ecto-sp13_S_contig19114:159..377Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig19114 160..377 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462974.2180672-CDS-Ecto-sp13_S_contig19114:377..5911681462974.2180672-CDS-Ecto-sp13_S_contig19114:377..591Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19114 378..591 +
1681462974.2281368-CDS-Ecto-sp13_S_contig19114:951..10351681462974.2281368-CDS-Ecto-sp13_S_contig19114:951..1035Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19114 952..1035 +
1681462974.2379422-CDS-Ecto-sp13_S_contig19114:1314..13801681462974.2379422-CDS-Ecto-sp13_S_contig19114:1314..1380Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19114 1315..1380 +
1681462974.247429-CDS-Ecto-sp13_S_contig19114:1767..21411681462974.247429-CDS-Ecto-sp13_S_contig19114:1767..2141Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19114 1768..2141 +
1681462974.26071-CDS-Ecto-sp13_S_contig19114:2669..27711681462974.26071-CDS-Ecto-sp13_S_contig19114:2669..2771Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19114 2670..2771 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig19114.6090.1

>prot_Ecto-sp13_S_contig19114.6090.1 ID=prot_Ecto-sp13_S_contig19114.6090.1|Name=mRNA_Ecto-sp13_S_contig19114.6090.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=280bp
MTEEEKAEAIRHRDVVRARAAAGEAGTPGPCSAGDNCVAKEGSQAIVTKC
PHGNGRHFACARVACSPDCADSAGGEEGSGDPKTPGNSDAGSDASALDMS
GGDDIAAAATPTGARQRTSLEATPASSRRTSGEGVGAGRIMMPRNKASTP
SKQAATPSKTGSVVLPLEDIKVCIADALTQLFGDKKIVSALVDKMAGTAS
QAKATNAVVAAINTISKEFIAAAKDAGKEACATHLKAPLTDLAKTQETAA
KLWKETSVEAANKWKSNAQAVAKGSGQVMT
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mRNA from alignment at Ecto-sp13_S_contig19114:160..2771+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig19114.6090.1 ID=mRNA_Ecto-sp13_S_contig19114.6090.1|Name=mRNA_Ecto-sp13_S_contig19114.6090.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2612bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19114:160..2771+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTCCGGTATGGCGAATGTCGGGGCGGCTGGGTCCGCCACGACGACAGA
TTTTTCCTGCTTCATCCTTGGGGAGTGCATTCAGCCGGAGTGCAACACTG
ACCACCGCTGTAGTGGGTGCAAGGGACCCGTGCACAACACGTGCAGTCAG
GACCTAGGGGTGTTGGCGAACCCTCCGAGTTCGGGTTCGCATGCGGCGGA
GACAAGTGCAAGCTTAAGATGACGGAGGAAGAGAAGGCCGAAGCTATTCG
TCACCGCGACGTCGTGCGAGCCCGAGCTGCTGCAGGAGAAGCTGGAACAC
CAGGCCCGTGCAGTGCCGGCGACAACTGCGTGGCCAAGGAAGGTTCGCAG
GCGATCGTCACAAAATGCCCTCACGGTAATGGGAGGCACTTCGCGTGCGC
CCGCGTGGCTTGCTCCCCTGACTGCGCCGATTGTGGTGAGTGCACATGGC
GCTCCAGACGTTTTTTCTTGTGAGATTGTTTTTCTGTGTTTGAACAGCAG
GGTCCCGGGCATTTGGGGTAACAAAAACATGATCGCCGTGGCGCAAGGCC
GCAGGGCTTTGGCACGATGTCCCTGGTTACCGAAGCTAGTCGGGTATCTT
CGGCAAAGTGTCCTGTGCCGTGGAGGCCCCGAACACACGGAATGCAAGCG
GGTCACATGCATACGATCGGCTAGACAAATATGGACTATCTCTAACGGTA
GCCTTTTGCTTTTTGAATCGTGGTCTATGCTGACCAAGCTACTGCTGACC
CTTGAACACGTCCCACTGGACACAAAACAGGGTCCGAGGAAGCCGCTGGA
GGAGAGGAGGGTAGCGGTGACCCCAAGACTCCCGGAAATTCGGACGCCGG
CTCGGACGCGTCTGCCCTTGACATGAGTGAGTCCGTGTAGAGTAGCACCT
GTAAAGAATAGCAAGGCCAGACAATAACAGTTGCTCCTGTCCGCGACGCC
GTAGCAGTAAGGCCCGATTCGCCGCATGGTTGCAAGGAGAGCGGAATCGT
TCGCCAGCAAAAGGACGGTCAGCCTTCTGTGTGTGAGGCGTCGATGAACA
TGGCAGTCCGCCAACAGCAGGCTTCGTTCATTCTCTAACAAGTCGCAATT
CCTACGGTTGTGCTTGTCTGTTCGTTTATGCGCGTGATACATGTGAAAAT
CGTAGGCGGAGGTGACGATATTGCTGCCGCCGCCACACCCACCGGCGCAC
GGCAGCGAACCTCTCTCGAAGGTGGGCTCCAGAGCGCGCCTGTGTCGCGA
AAACGCGGAGCAGCAGTGGCGACCCACATTGTTGTGGTCATTACATCGAT
GCCCACGAAACATCATGAAATGCGTTCGCACGAGGGCATGACGCCGACCA
CTATCAGTGTATGGTGGCAAAGGGGTGATGCGTGTGTCCAAACAGCTACA
CTTTTATACGTGTATTTTGCGTCCCGTCTCTCCTTGCGCCGTGTGTGTCT
AGCCATGTTCGGTCTGTGTATTTGACGTCGATCCGGGGATATGTCAAGTA
GGCTTGGAGAAATGTTTAGATACAATACTGCGGAAGTATACTCCGTACTA
AGGTTAGCCCATTTTGCGTCCCTCCGTTGCTGTTCCATTCGTCGCACTTG
GTTATCAGCTACTCCGGCGTCGAGCCGTAGGACATCGGGAGAAGGGGTGG
GGGCCGGTAGGATTATGATGCCGCGCAACAAGGCCTCTACGCCTTCGAAG
CAGGCGGCCACGCCGTCGAAGACTGGATCTGTCGTCCTGCCCCTGGAAGA
CATCAAGGTCTGCATCGCCGACGCCTTGACGCAGTTGTTCGGAGACAAGA
AGATCGTCAGTGCTTTGGTTGACAAGATGGCAGGGACTGCGAGCCAAGCG
AAGGCCACGAACGCAGTAGTAGCAGCTATCAACACCATCTCCAAGGAGTT
CATCGCTGCCGCCAAGGACGCCGGCAAAGAAGCATGCGCCACCCACTTGA
AGGCACCTCTCACCGACTTAGCCAAGACACAGGTGAGGAACGGTATCGAT
GTTGGGTGCATGTATTGGGTTCCATCTCTTGGAGATGTTTGGTGCAACCG
CGCATACAGAAATTAAGTTGTAGGCGTTGGCGTACGCGTGACAAGGGATA
TGAATCTACGACCTGCCGAACTACCCATCGATACGTAACAAATATCCCGC
GTAACCACCACCCGAATGCGGCCGTAGCACAAGAAAAACCTCGACATCAT
TCCGCGGCTATATCCCCGATTCTATTTGTTTTTGTTTCATCTCACCTCGT
CGTTGTTTGTTTTCGTTACATAACCCGGTGCGTCTTTTTATGTCTTAACA
ATTTACATCAGCCTCGGGTTGTCGGTGGTCACAGCATGGGGATTTATTCG
GTAGTTGCCAACTATGCTGTAGCATGTTGCTGTTGCTGCCAACGGTGCTG
CTCGTGCAGTGCTTTGGTGAGGTCTGCAACGGCCGGCAAACAGACCCTCA
TGGACATGTGTACATTCTTGTCTCGGCCCTGTGAATCGTGGTATCTTGTC
TGTGACACAGGAAACCGCTGCCAAATTGTGGAAGGAAACCTCCGTCGAGG
CGGCAAACAAATGGAAGTCCAACGCCCAAGCAGTCGCGAAGGGTTCAGGA
CAGGTGATGACA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig19114:160..2771+

>mRNA_Ecto-sp13_S_contig19114.6090.1 ID=mRNA_Ecto-sp13_S_contig19114.6090.1|Name=mRNA_Ecto-sp13_S_contig19114.6090.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=840bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19114:160..2771+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGACGGAGGAAGAGAAGGCCGAAGCTATTCGTCACCGCGACGTCGTGCG
AGCCCGAGCTGCTGCAGGAGAAGCTGGAACACCAGGCCCGTGCAGTGCCG
GCGACAACTGCGTGGCCAAGGAAGGTTCGCAGGCGATCGTCACAAAATGC
CCTCACGGTAATGGGAGGCACTTCGCGTGCGCCCGCGTGGCTTGCTCCCC
TGACTGCGCCGATTCCGCTGGAGGAGAGGAGGGTAGCGGTGACCCCAAGA
CTCCCGGAAATTCGGACGCCGGCTCGGACGCGTCTGCCCTTGACATGAGC
GGAGGTGACGATATTGCTGCCGCCGCCACACCCACCGGCGCACGGCAGCG
AACCTCTCTCGAAGCTACTCCGGCGTCGAGCCGTAGGACATCGGGAGAAG
GGGTGGGGGCCGGTAGGATTATGATGCCGCGCAACAAGGCCTCTACGCCT
TCGAAGCAGGCGGCCACGCCGTCGAAGACTGGATCTGTCGTCCTGCCCCT
GGAAGACATCAAGGTCTGCATCGCCGACGCCTTGACGCAGTTGTTCGGAG
ACAAGAAGATCGTCAGTGCTTTGGTTGACAAGATGGCAGGGACTGCGAGC
CAAGCGAAGGCCACGAACGCAGTAGTAGCAGCTATCAACACCATCTCCAA
GGAGTTCATCGCTGCCGCCAAGGACGCCGGCAAAGAAGCATGCGCCACCC
ACTTGAAGGCACCTCTCACCGACTTAGCCAAGACACAGGAAACCGCTGCC
AAATTGTGGAAGGAAACCTCCGTCGAGGCGGCAAACAAATGGAAGTCCAA
CGCCCAAGCAGTCGCGAAGGGTTCAGGACAGGTGATGACA
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