mRNA_Ecto-sp13_S_contig191.6081.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig191.6081.1
Unique NamemRNA_Ecto-sp13_S_contig191.6081.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig191.6081.1 vs. uniprot
Match: D7FRY6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRY6_ECTSI)

HSP 1 Score: 355 bits (912), Expect = 1.720e-123
Identity = 191/197 (96.95%), Postives = 193/197 (97.97%), Query Frame = 1 
Query:    1 MAPVSYITLVVCALTLLLPRNGADAFVHPRPALLRSRQQQQSIMVMSATRRAFLSDQLVGAIGAGVLGLGLATERATAYEKEYLKEPTAEFKAMEARQADFSAAQRAYKQEFVKKLDAFLAIETDEDAVSTLNAMSNTVIQHGGLPESVRINDLLKTCRRKKAAMKDSGKWSTPVQIAYETLVQTTNRTVVPLQSGS 591
            MAPVSYITLVV ALTLLLPR GADAFVHPRPAL RSRQQQQSIMVMSATRRAFLSDQLVGAIGAGVLGLGLATERATAYEKEYLKEPTAEFKAMEARQADFSAAQRAYKQEFVKKLDAFLA+ETDE+AVSTLNAMSNTVIQ GGLPESVRINDLLKTCRRKKAAMKDSGKWSTPVQIAYETLVQTTNRTVVPLQSGS
Sbjct:    1 MAPVSYITLVVSALTLLLPRKGADAFVHPRPALPRSRQQQQSIMVMSATRRAFLSDQLVGAIGAGVLGLGLATERATAYEKEYLKEPTAEFKAMEARQADFSAAQRAYKQEFVKKLDAFLAVETDEEAVSTLNAMSNTVIQRGGLPESVRINDLLKTCRRKKAAMKDSGKWSTPVQIAYETLVQTTNRTVVPLQSGS 197
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig191.6081.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FRY6_ECTSI1.720e-12396.95Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig191contigEcto-sp13_S_contig191:4174..7253 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score364.4
Seed ortholog evalue3.4e-98
Seed eggNOG ortholog2880.D7FRY6
Model size594
Hectar predicted targeting categorysignal peptide
Exons2
EggNOG OGs2E8FF@1,2SEXQ@2759
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-03_003630.1
Cds size594
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462973.324382-CDS-Ecto-sp13_S_contig191:4173..44131681462973.324382-CDS-Ecto-sp13_S_contig191:4173..4413Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig191 4174..4413 +
1681462973.3339655-CDS-Ecto-sp13_S_contig191:6899..72531681462973.3339655-CDS-Ecto-sp13_S_contig191:6899..7253Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig191 6900..7253 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig191.6081.1prot_Ecto-sp13_S_contig191.6081.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig191 4174..7253 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig191.6081.1

>prot_Ecto-sp13_S_contig191.6081.1 ID=prot_Ecto-sp13_S_contig191.6081.1|Name=mRNA_Ecto-sp13_S_contig191.6081.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=198bp
MAPVSYITLVVCALTLLLPRNGADAFVHPRPALLRSRQQQQSIMVMSATR
RAFLSDQLVGAIGAGVLGLGLATERATAYEKEYLKEPTAEFKAMEARQAD
FSAAQRAYKQEFVKKLDAFLAIETDEDAVSTLNAMSNTVIQHGGLPESVR
INDLLKTCRRKKAAMKDSGKWSTPVQIAYETLVQTTNRTVVPLQSGS*
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mRNA from alignment at Ecto-sp13_S_contig191:4174..7253+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig191.6081.1 ID=mRNA_Ecto-sp13_S_contig191.6081.1|Name=mRNA_Ecto-sp13_S_contig191.6081.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3080bp|location=Sequence derived from alignment at Ecto-sp13_S_contig191:4174..7253+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCTCCTGTTTCGTATATCACGCTCGTCGTATGTGCGCTTACCCTTCT
TCTCCCGCGTAACGGTGCAGATGCCTTTGTGCATCCTCGTCCGGCTTTGC
TGCGTAGTCGACAGCAGCAGCAGTCGATAATGGTCATGAGCGCGACTAGG
AGGGCTTTCTTGAGTGATCAGCTGGTTGGGGCAATCGGGGCGGGAGTATT
AGGGCTGGGATTGGCGACGGAGCGAGCGACAGCATACGAGGTCAGTGGTA
GCAAAGTATTCCGGGAGCATAACGCGTTGGTGCATGTACGTTTGTTCGTG
CTTTGTTGGGGTCGACAAACGGCGTCCTGCCCTCTGTTGATCGTTGTCTC
GCCACCTACAAGCCTCGTATCCTTCCACCCGAGCAGACTCACACTAATTC
ACACCCAAACCGGCAGCAACTATGCAGGACTTTTCAAAGGAAGTAAGTAC
GGTGTGATTTGCACAAAAATAAGACAGCTCGATAGGGTACATCAAGTTGT
TTCCAGCATGCACATGTGAAATAAACTGGGCGTTGTTCAACATGCGCACC
CTAACGGCACTTCAGTCGTAGATCCTTTCATGTACGTCAGAGGCGTTCAC
CACGAGGAGGCGTGCACATGTGGTCGATCACAGTATCACAATAGTAAATA
CGTGTGTTACCAACAACTCTGTCTACGCTATGATTGTACGTCATATTTCA
ATGTCACTTCACGAGGAAGCAGTTGATGGCACCGAGTTCACCGCTTTCGT
CACAAACATGTTCACGTTCGGCCCGCCACAGATTTTCTATTGGATGCCAC
CACAGCGGTTGACGCTATATGTGAGACAGAGTACGAGCAGATGGCTGCGA
GCCGCTTATAAAATTTTGGGAGGGGCAATACCTCGTTTTTGCTACTACTG
TGCCTGCAAGAAGGCTATGTAGTAGATAGATGCCCGCGCTCGTTCAAAAA
GTGTGTGGTGCATGAGGAGCACAGGGCAGGAACAGCTTCGGACACTCGAC
ACCCTCTATTCGTGTTAGTGTTGGAAATCGTATCGAATTTTTCGATTTAG
TCTATATCGTATCGAATTCTCGTATCGAAATCGGACATGAAAAACATTTG
AACTTTTCGATATTTCGATATTTCGATATCGATATATGCACGGTAGATCG
ATGAAATCTCCACGAAACCCCCGATATCCCACACGAAAACCCTACAGCTG
CACACCACACAGCACATAGCATCACGCCGTGAAATGCGCGCATTCAATGA
ATACCTGCAGGTACAATCCATTTTTTATCTCTCATGATTGTGAGTGCCAT
TTATCTCTCATGGCCGTGAGAGCTTGTCTTTCTGGGACAAGCAAGCTTAC
TTTTTTTGTTGCGGCGTGCGATACCGCTGAGCTTTCTTGAAGCAGGAAAG
TGTAGAATGAACAGAAATGAAATAGACTCATTTCAGATGTACACTAGTGC
CCACATACATTTTGTTTGTTCAATCAAGCAGTTGGCTTTTACACTGACTG
CAGGTTTCGGAGGCCTATTTTCCGGTAATTTTGATGGAAAATGAAGCAAA
AATTGCTCCAATTTTCTGGCCTCTGGCGGCGCCTCCAGCGGGGGCCCCTC
ACCAGCCGGGGGCGCTTGGGCTCGCACAGCGAGCTTCCGCGCTTCGCGCG
TCAGCTCACTGCTCAACGGCTCGCTTCGCTCGCCAATATCGATATTGATG
TCGAACTCTTCACGGGTGATGTCCTATCGAACCTATTGATTGAATCGATA
TCCAACACTAACTCAGCAGCAGCAGCCTATATAGAGCTGTACACATCGTC
ATCCACCATGGTGTCGGTGTGTAAAAGCGGGTGTGTGCTCTCGCTGATTG
TATCTCCTATCCGCTGCTCTGCCGTAAGTTGTTGTTCGTTGTGTTGCTTA
CACACCCTACCCAAAACGTACACCACCAGGACTACTATAACTGGAACTAT
CAGCAGCAACACCAGAAACATGTGGTACCTACCAAAGGGTCGATTATCTA
CTGCTGTATCCTCGTTCTCAGCGGTGAGGTAGATCAGCCTCCTCTCTCTT
TGTGTGTGTATTCCATGCATGCATGCTCTGCTGATGATCTGCTCTCCCGC
GTGAAGGAAAGAACAAGCGCCGCGACCAAAACCCACAAACACAGGATGTA
TGTGTATGTGTGCCCATACGCCCTGCCGCTTCCCTCCTCGCCTCCACAGC
AGCTCACTATTCAACAACACTACAAGAGTTGGTAACACCGTCCCGCCTCT
CTTCGGCTGGCATGTCCCTACCCCCTCATTCGCCTCTCTCTCCCCCTCTA
CCTACAAGGGACATACAGCACACAGCATACCCATCATGATGCCTATCTCT
TTTTCGGTGAGATGCATCCTTCCAGACCACAAGTTCGGACGTGCGTGGAT
TGAGCGGGAAGAGGTTGTGACAACACGCGGAACATACGCATTGGGCACAA
GTCTTGGCTTTGGTGCCCAGTTGGTCAAATGAGCTCCAGTCTCCTGGCTT
TCATCGACGCACACAAAAGATTCAGACGCACAGACACGCAGGTCCGTTTT
CCGAACGGCCTCCCCTCTGTTGGGTTTTTCTTGTGAAGTATTGTGTTACG
TGCATGTGCTCATGTCCAACTATTACAAAGTAGGAAGTATTATAAATATG
CTCGCGCAGCCTGCCCTTTTGTGGTCAACAAGCGTCTTGGTTGTCGGTGC
GCTGCTGGTTTCGTTTCCGTTCGCAGAAAGAGTATCTGAAAGAGCCTACG
GCGGAGTTCAAGGCGATGGAGGCTCGGCAAGCTGATTTTTCTGCTGCCCA
ACGGGCATACAAGCAAGAGTTCGTCAAAAAATTGGACGCATTCCTCGCTA
TTGAGACAGACGAAGACGCGGTTTCGACCTTGAACGCAATGTCAAACACG
GTCATCCAACATGGTGGGTTGCCGGAAAGCGTTCGCATCAACGATCTGTT
GAAGACATGCAGGAGGAAAAAGGCGGCGATGAAAGACAGTGGCAAGTGGT
CCACGCCAGTTCAAATCGCATACGAGACCCTTGTTCAAACGACAAACCGA
ACGGTTGTCCCTCTGCAGAGTGGGAGCTAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig191:4174..7253+

>mRNA_Ecto-sp13_S_contig191.6081.1 ID=mRNA_Ecto-sp13_S_contig191.6081.1|Name=mRNA_Ecto-sp13_S_contig191.6081.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=594bp|location=Sequence derived from alignment at Ecto-sp13_S_contig191:4174..7253+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCTCCTGTTTCGTATATCACGCTCGTCGTATGTGCGCTTACCCTTCT
TCTCCCGCGTAACGGTGCAGATGCCTTTGTGCATCCTCGTCCGGCTTTGC
TGCGTAGTCGACAGCAGCAGCAGTCGATAATGGTCATGAGCGCGACTAGG
AGGGCTTTCTTGAGTGATCAGCTGGTTGGGGCAATCGGGGCGGGAGTATT
AGGGCTGGGATTGGCGACGGAGCGAGCGACAGCATACGAGAAAGAGTATC
TGAAAGAGCCTACGGCGGAGTTCAAGGCGATGGAGGCTCGGCAAGCTGAT
TTTTCTGCTGCCCAACGGGCATACAAGCAAGAGTTCGTCAAAAAATTGGA
CGCATTCCTCGCTATTGAGACAGACGAAGACGCGGTTTCGACCTTGAACG
CAATGTCAAACACGGTCATCCAACATGGTGGGTTGCCGGAAAGCGTTCGC
ATCAACGATCTGTTGAAGACATGCAGGAGGAAAAAGGCGGCGATGAAAGA
CAGTGGCAAGTGGTCCACGCCAGTTCAAATCGCATACGAGACCCTTGTTC
AAACGACAAACCGAACGGTTGTCCCTCTGCAGAGTGGGAGCTAG
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