prot_Ecto-sp13_S_contig19085.6074.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig19085.6074.1
Unique Nameprot_Ecto-sp13_S_contig19085.6074.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length168
Homology
BLAST of mRNA_Ecto-sp13_S_contig19085.6074.1 vs. uniprot
Match: D7FRR9_ECTSI (rRNA biogenesis protein rrp5 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRR9_ECTSI)

HSP 1 Score: 278 bits (711), Expect = 1.350e-83
Identity = 150/210 (71.43%), Postives = 152/210 (72.38%), Query Frame = 0
Query:    1 GTSFDLRSLKPGMLVDAIVDSVLSNGILVSFLGYFAGCVDHNNMPLVSGDGKDEPKGWRPLFRPGPEPVRARVLLVDYVNKAIRLTLRPHLMDMRAPSGLPPTGALLEGEVVRVDPALGLLLAVRNEVVREIPASPV--------------------------------------------TIGAYVHISRISDERVEHVEKSYKPGQKV 166
            GTSFDLRSLKPGMLVDAIVDSVLSNGILVSFLGYFAGCVDHNNMPLVSGDGKDEPKGWRPLFRPGPEPVRARVLLVDYVNKAIRLTLRPHLM+MR PSGLPPTGALLEGEVVRVDPALGLLL V +                                                       TIGAYVHISRISDERVEHVEKSYKPGQKV
Sbjct:  327 GTSFDLRSLKPGMLVDAIVDSVLSNGILVSFLGYFAGCVDHNNMPLVSGDGKDEPKGWRPLFRPGPEPVRARVLLVDYVNKAIRLTLRPHLMEMRTPSGLPPTGALLEGEVVRVDPALGLLLTVPSTEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKKWKTIGAYVHISRISDERVEHVEKSYKPGQKV 536          
BLAST of mRNA_Ecto-sp13_S_contig19085.6074.1 vs. uniprot
Match: A0A6H5LPP1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LPP1_9PHAE)

HSP 1 Score: 271 bits (694), Expect = 2.620e-81
Identity = 151/215 (70.23%), Postives = 155/215 (72.09%), Query Frame = 0
Query:    1 GTSFDLRSLKPGMLVDAIVDSVLSNGILV--SFLGYFAGCVDHNNMPLVSGDGKDEPKGWRPLFRPGPEPVRARVLLVDYVNKAIRLTLRPHLMDMRAPSGLPPTGALLEGEVVRVDPALGLLLAVRN-------EVVREIPASPV----------------------------------------TIGAYVHISRISDERVEHVEKSYKPGQKV 166
            GTSFDLRSLKPGMLVDAIVDSVLSNGILV  SFLGYFAGCVDHNNMPLVS DGKDEPKGWR LFRPGPEPVRARVLLVDYVNKAIRLT RPHLM+MRAPSGLPPTGALL+GEVVRVDPALGLLL V +       EV    PA+                                          TIGAYVHISRISDERVEHVEKSYKPGQKV
Sbjct:  374 GTSFDLRSLKPGMLVDAIVDSVLSNGILVRVSFLGYFAGCVDHNNMPLVSADGKDEPKGWRALFRPGPEPVRARVLLVDYVNKAIRLTFRPHLMEMRAPSGLPPTGALLDGEVVRVDPALGLLLTVPSTEKDDGSEVAGNAPAAKKERGQGRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKKWKTIGAYVHISRISDERVEHVEKSYKPGQKV 588          
BLAST of mRNA_Ecto-sp13_S_contig19085.6074.1 vs. uniprot
Match: A0A2V0P3Y3_9CHLO (Uncharacterized protein n=1 Tax=Raphidocelis subcapitata TaxID=307507 RepID=A0A2V0P3Y3_9CHLO)

HSP 1 Score: 121 bits (304), Expect = 7.510e-29
Identity = 72/171 (42.11%), Postives = 101/171 (59.06%), Query Frame = 0
Query:    1 GTSFDLRSLKPGMLVDAIVDSVLSNGILVSFLGYFAGCVDHNNM--PLVSGDGKDEPKGWRPLFRPGPEPVRARVLLVDYVNKAIRLTLRPHLMDMRAPSGLPPTGALLEGEVVR-VDPALGLLLAVRNEVVREIPASPVTIGAYVHISRISDERVEHVEKSYKPGQKVCA 168
            G    L  L PGMLV A V SVLS+G+LV+FL YF G +DH ++  P+ S D       W   ++ G + ++AR+L VD+ +K   L+L PHL++ R P+ +P  G + +   VR VDPALGLLL        ++P SP    A+ H+S ++D R E  EK +KPGQ V A
Sbjct:  310 GGGLTLAGLLPGMLVTAKVRSVLSDGLLVTFLTYFNGTIDHYHLADPIPSDD-------WAARYQEG-QKLKARILYVDFASKRAGLSLLPHLLNCRMPTVVPMLGEIFDAATVRRVDPALGLLL--------QLPTSPSPAAAFAHVSNLADGRTERPEKVFKPGQAVRA 464          
BLAST of mRNA_Ecto-sp13_S_contig19085.6074.1 vs. uniprot
Match: I0YYB1_COCSC (Uncharacterized protein n=1 Tax=Coccomyxa subellipsoidea (strain C-169) TaxID=574566 RepID=I0YYB1_COCSC)

HSP 1 Score: 115 bits (288), Expect = 1.050e-26
Identity = 74/165 (44.85%), Postives = 100/165 (60.61%), Query Frame = 0
Query:    6 LRSLKPGMLVDAIVDSVLSNGILVSFLGYFAGCVDHNNMPLVSGDGKDEPKGWRPLFRPGPEPVRARVLLVDYVNKAIRLTLRPHLMDMRAPSGLPPTGALLEGEVVR-VDPALGLLLAVRNEVVREIPAS-PVTIGAYVHISRISDERVEHVEKSYKPGQKVCA 168
            + SL PGMLV+A V +VLS+G+LVSFL YF G VD  ++       +  P  W+  +  G   VRAR++ VD V+K + L+L PHL+   A   LPP   L E  +VR VD ALGLLL +R+E   + PA  P     Y HIS +S+ R+E ++K YK G+KV A
Sbjct:  194 IGSLLPGMLVNARVRNVLSDGLLVSFLTYFNGTVDCFHLSQ-----QPPPADWQKGYEAGAR-VRARIIYVDPVSKRVSLSLLPHLVAGSASPALPPINTLFEHSIVRRVDNALGLLLELRSE--DDAPAEQPNAPAGYAHISAVSESRIEKLDKVYKVGKKVAA 350          
BLAST of mRNA_Ecto-sp13_S_contig19085.6074.1 vs. uniprot
Match: A0A5B7AEH9_DAVIN (Uncharacterized protein n=1 Tax=Davidia involucrata TaxID=16924 RepID=A0A5B7AEH9_DAVIN)

HSP 1 Score: 112 bits (280), Expect = 1.250e-25
Identity = 69/169 (40.83%), Postives = 101/169 (59.76%), Query Frame = 0
Query:    1 GTSFDLRSLKPGMLVDAIVDSVLSNGILVSFLGYFAGCVD--HNNMPLVSGDGKDEPKGWRPLFRPGPEPVRARVLLVDYVNKAIRLTLRPHLMDMRAPSGLPPTGALLE-GEVVRVDPALGLLLAVRNEVVREIPASPVTIGAYVHISRISDERVEHVEKSYKPGQKV 166
            G S DL  L PGM+V+A V S+L NGI++SFL YF G VD  H      + + KD+    +         V AR+L +D   +A+ LTL PHL+  +AP  L  TG + +  +V+RVD  LGLLL        E+P+SPV   AYV+++ ++D++V ++EKS+K G +V
Sbjct:  209 GISIDL--LVPGMMVNARVQSILENGIMLSFLTYFTGTVDIFHLQKTFPTSNWKDDYNQNKK--------VNARILFIDPSTRAVGLTLNPHLVHNKAPPSLVKTGDIFDHSKVIRVDRGLGLLL--------EVPSSPVPTPAYVNVADVADKKVRNLEKSFKEGSRV 359          
BLAST of mRNA_Ecto-sp13_S_contig19085.6074.1 vs. uniprot
Match: UPI001263E62C (rRNA biogenesis protein RRP5 n=2 Tax=Anacardiaceae TaxID=4011 RepID=UPI001263E62C)

HSP 1 Score: 105 bits (262), Expect = 3.280e-23
Identity = 71/171 (41.52%), Postives = 96/171 (56.14%), Query Frame = 0
Query:    1 GTSFDLRSLKPGMLVDAIVDSVLSNGILVSFLGYFAGCVD----HNNMPLVSGDGKDEPKGWRPLFRPGPEPVRARVLLVDYVNKAIRLTLRPHLMDMRAPSGLPPTGALLE-GEVVRVDPALGLLLAVRNEVVREIPASPVTIGAYVHISRISDERVEHVEKSYKPGQKV 166
            G S DL  L PGM+V A V S+L NGI++SFL YF G VD     N  P  +         WR  +    + V AR+L VD  ++AI LTL P+L+  +AP      G + +  +VVRVD  LGLLL        +IP +P +I AYV IS +++E V+ +EK YK G +V
Sbjct:  307 GISIDL--LIPGMMVSARVQSILENGIMLSFLTYFTGTVDIFHLQNTFPTTN---------WRNDYSQNKK-VNARILFVDPSSRAIGLTLNPYLLHNKAPPSHVKIGDIYDQSKVVRVDRGLGLLL--------DIPTTPASIPAYVSISDVAEEEVKKLEKKYKEGTRV 457          
BLAST of mRNA_Ecto-sp13_S_contig19085.6074.1 vs. uniprot
Match: A0A0W8DSU2_PHYNI (Uncharacterized protein n=1 Tax=Phytophthora nicotianae TaxID=4790 RepID=A0A0W8DSU2_PHYNI)

HSP 1 Score: 104 bits (260), Expect = 5.940e-23
Identity = 65/180 (36.11%), Postives = 101/180 (56.11%), Query Frame = 0
Query:    1 GTSFDLRSLKPGMLVDAIVDSVLSNGILVSFLGYFAGCVDHNNMPLVSGDGKDEPKGWRPLFRPGPEPVRARVLLVDYVNKAIRLTLRPHLMDMRAPSGLPPTGALLEGEVV-RVDPALGLLLAVRN--EVVREIPASPV---TIGA--------YVHISRISDERVEHVEKSYKPGQKV 166
            G SF L+ L PGML++  V+ VL NG+ V+FL +F   V+ N+M L         +GW   +R G +  RAR++ +DY+ K I L++ PH++ M+ P  L   G ++E   + R+D  +G+LL+++N  E V    AS     T  A        YVHIS +SD+RV+ +EK +  G  +
Sbjct:  263 GDSFTLKQLVPGMLLNVRVEDVLENGLSVTFLTFFTATVEQNHMSLPCE------RGWEESYRKGMK-ARARIISIDYIAKQITLSMAPHVVHMQVPESLFSVGDIIEEATIERIDAGVGMLLSLKNQDEDVEMGDASDKKESTTNAKWKAFAPGYVHISNVSDKRVDKLEKKFTVGSSI 435          
BLAST of mRNA_Ecto-sp13_S_contig19085.6074.1 vs. uniprot
Match: W2QFF6_PHYPN (Uncharacterized protein n=13 Tax=Phytophthora TaxID=4783 RepID=W2QFF6_PHYPN)

HSP 1 Score: 104 bits (260), Expect = 6.090e-23
Identity = 65/180 (36.11%), Postives = 101/180 (56.11%), Query Frame = 0
Query:    1 GTSFDLRSLKPGMLVDAIVDSVLSNGILVSFLGYFAGCVDHNNMPLVSGDGKDEPKGWRPLFRPGPEPVRARVLLVDYVNKAIRLTLRPHLMDMRAPSGLPPTGALLEGEVV-RVDPALGLLLAVRN--EVVREIPASPV---TIGA--------YVHISRISDERVEHVEKSYKPGQKV 166
            G SF L+ L PGML++  V+ VL NG+ V+FL +F   V+ N+M L         +GW   +R G +  RAR++ +DY+ K I L++ PH++ M+ P  L   G ++E   + R+D  +G+LL+++N  E V    AS     T  A        YVHIS +SD+RV+ +EK +  G  +
Sbjct:  263 GDSFTLKQLVPGMLLNVRVEDVLENGLSVTFLTFFTATVEQNHMSLPCE------RGWEESYRKGMK-ARARIISIDYIAKQITLSMAPHVVHMQVPESLFSVGDIIEEATIERIDAGVGMLLSLKNQDEDVEMGDASDKKESTTNAKWKAFAPGYVHISNVSDKRVDKLEKKFTVGSSI 435          
BLAST of mRNA_Ecto-sp13_S_contig19085.6074.1 vs. uniprot
Match: A0A484DYK6_BRELC (Uncharacterized protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484DYK6_BRELC)

HSP 1 Score: 104 bits (260), Expect = 6.090e-23
Identity = 59/180 (32.78%), Postives = 105/180 (58.33%), Query Frame = 0
Query:    1 GTSFDLRSLKPGMLVDAIVDSVLSNGILVSFLGYFAGCVDHNNMPLVSGDGKDEPKGWRPLFRPGPEPVRARVLLVDYVNKAIRLTLRPHLMDMRAPSGLPPTGALLEG-EVVRVDPALGLLLAVRNE---------VVREIPASPVT----IGAYVHISRISDERVEHVEKSYKPGQKV 166
            G +F L+ L PGML++  VD +L NG+ V+FL +F   V+ N+M L         +GW+ L+R G +  RAR++ +D   K I L++ PH++ ++ P  L   G ++E   + R+D  +G+LL+++++          V++   S ++    +  YVHIS++SD+RV+ +EK +K G  +
Sbjct:  268 GDAFALKQLIPGMLLNVRVDEILENGLSVTFLTFFTATVEENHMSLPCE------RGWQELYRRGLK-ARARIVSIDATTKQITLSMAPHVVHLQVPESLYSIGDIIENASIERIDAGIGMLLSLKSKDEDVTMEGGSVKKSATSHLSWKDFVPGYVHISKVSDKRVDKLEKKFKVGSTI 440          
BLAST of mRNA_Ecto-sp13_S_contig19085.6074.1 vs. uniprot
Match: A0A2H5MXP0_CITUN (Uncharacterized protein n=8 Tax=Citrus TaxID=2706 RepID=A0A2H5MXP0_CITUN)

HSP 1 Score: 103 bits (257), Expect = 1.540e-22
Identity = 69/171 (40.35%), Postives = 95/171 (55.56%), Query Frame = 0
Query:    1 GTSFDLRSLKPGMLVDAIVDSVLSNGILVSFLGYFAGCVD----HNNMPLVSGDGKDEPKGWRPLFRPGPEPVRARVLLVDYVNKAIRLTLRPHLMDMRAPSGLPPTGALLE-GEVVRVDPALGLLLAVRNEVVREIPASPVTIGAYVHISRISDERVEHVEKSYKPGQKV 166
            G S DL  L PGM+V A V S+L NG+++SFL YF G VD     N  P  +         W+  +    + V AR+L VD  ++A+ LTL P+L+  RAP      G + +  +VVRVD  LGLLL        +IP++PV+  AYV IS +++E V  +EK YK G  V
Sbjct:  312 GISIDL--LVPGMMVTARVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTN---------WKNDYNQHKK-VNARILFVDPTSRAVGLTLNPYLLHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLL--------DIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSYV 462          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig19085.6074.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FRR9_ECTSI1.350e-8371.43rRNA biogenesis protein rrp5 n=1 Tax=Ectocarpus si... [more]
A0A6H5LPP1_9PHAE2.620e-8170.23Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A2V0P3Y3_9CHLO7.510e-2942.11Uncharacterized protein n=1 Tax=Raphidocelis subca... [more]
I0YYB1_COCSC1.050e-2644.85Uncharacterized protein n=1 Tax=Coccomyxa subellip... [more]
A0A5B7AEH9_DAVIN1.250e-2540.83Uncharacterized protein n=1 Tax=Davidia involucrat... [more]
UPI001263E62C3.280e-2341.52rRNA biogenesis protein RRP5 n=2 Tax=Anacardiaceae... [more]
A0A0W8DSU2_PHYNI5.940e-2336.11Uncharacterized protein n=1 Tax=Phytophthora nicot... [more]
W2QFF6_PHYPN6.090e-2336.11Uncharacterized protein n=13 Tax=Phytophthora TaxI... [more]
A0A484DYK6_BRELC6.090e-2332.78Uncharacterized protein n=1 Tax=Bremia lactucae Ta... [more]
A0A2H5MXP0_CITUN1.540e-2240.35Uncharacterized protein n=8 Tax=Citrus TaxID=2706 ... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D2.40.50.140coord: 101..168
e-value: 7.4E-7
score: 30.9
coord: 2..90
e-value: 2.6E-6
score: 29.2
NoneNo IPR availablePANTHERPTHR23270PROGRAMMED CELL DEATH PROTEIN 11 PRE-RRNA PROCESSING PROTEIN RRP5coord: 4..166
IPR003029S1 domainPROSITEPS50126S1coord: 104..168
score: 12.147
IPR012340Nucleic acid-binding, OB-foldSUPERFAMILY50249Nucleic acid-binding proteinscoord: 4..94

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig19085contigEcto-sp13_S_contig19085:54..1749 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig19085.6074.1mRNA_Ecto-sp13_S_contig19085.6074.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig19085 54..1749 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig19085.6074.1 ID=prot_Ecto-sp13_S_contig19085.6074.1|Name=mRNA_Ecto-sp13_S_contig19085.6074.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=168bp
GTSFDLRSLKPGMLVDAIVDSVLSNGILVSFLGYFAGCVDHNNMPLVSGD
GKDEPKGWRPLFRPGPEPVRARVLLVDYVNKAIRLTLRPHLMDMRAPSGL
PPTGALLEGEVVRVDPALGLLLAVRNEVVREIPASPVTIGAYVHISRISD
ERVEHVEKSYKPGQKVCA
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003029S1_domain
IPR012340NA-bd_OB-fold