mRNA_Ecto-sp13_S_contig1904.6049.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1904.6049.1
Unique NamemRNA_Ecto-sp13_S_contig1904.6049.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1904.6049.1 vs. uniprot
Match: D8LC32_ECTSI (DUF4110 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LC32_ECTSI)

HSP 1 Score: 57.4 bits (137), Expect = 2.910e-8
Identity = 26/26 (100.00%), Postives = 26/26 (100.00%), Query Frame = 1 
Query:   79 VTVTVCDGPPSPRANFTVTSLPSGDM 156
            VTVTVCDGPPSPRANFTVTSLPSGDM
Sbjct:   42 VTVTVCDGPPSPRANFTVTSLPSGDM 67
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BLAST of mRNA_Ecto-sp13_S_contig1904.6049.1 vs. uniprot
Match: A0A836CMD6_9STRA (DUF4110 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CMD6_9STRA)

HSP 1 Score: 48.9 bits (115), Expect = 2.870e-5
Identity = 21/26 (80.77%), Postives = 24/26 (92.31%), Query Frame = 1 
Query:   79 VTVTVCDGPPSPRANFTVTSLPSGDM 156
            VTVT CD PPSPRAN+++TSLPSGDM
Sbjct:   47 VTVTPCDAPPSPRANYSMTSLPSGDM 72
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1904.6049.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LC32_ECTSI2.910e-8100.00DUF4110 domain-containing protein n=2 Tax=Ectocarp... [more]
A0A836CMD6_9STRA2.870e-580.77DUF4110 domain-containing protein n=1 Tax=Tribonem... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1904contigEcto-sp13_S_contig1904:2054..2761 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size158
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size156
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462971.1239567-CDS-Ecto-sp13_S_contig1904:2054..21321681462971.1239567-CDS-Ecto-sp13_S_contig1904:2054..2132Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1904 2055..2132 -
1681462971.135207-CDS-Ecto-sp13_S_contig1904:2683..27611681462971.135207-CDS-Ecto-sp13_S_contig1904:2683..2761Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1904 2684..2761 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1904.6049.1prot_Ecto-sp13_S_contig1904.6049.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1904 2055..2761 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1904.6049.1

>prot_Ecto-sp13_S_contig1904.6049.1 ID=prot_Ecto-sp13_S_contig1904.6049.1|Name=mRNA_Ecto-sp13_S_contig1904.6049.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=52bp
VRGLDGGRQASPRERLPGSPPPLFVKVTVTVCDGPPSPRANFTVTSLPSG
DM
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mRNA from alignment at Ecto-sp13_S_contig1904:2054..2761-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1904.6049.1 ID=mRNA_Ecto-sp13_S_contig1904.6049.1|Name=mRNA_Ecto-sp13_S_contig1904.6049.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=708bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1904:2054..2761- (Ectocarpus species13 EcNAP12_S_4_19m)
GTTCGAGGGCTTGACGGAGGTCGACAAGCCAGTCCCCGCGAGAGGCTTCC
AGGGAGCCCGCCACCCTTGTTCGTGAAGGCGCGAACCGTAAGCGTCAATA
CCACTACCCCATCAGCACTCTGATGGCTGTATAAACGAAGTTCCTCCGTT
CAGAAGACTCAACGAAATTCATACCTTGTCGTGGCTCAGGTTGTGAGAAT
AGTAATATTCAAGTACACATATGTACAGTAGCAGAAATACTATCCGTCCG
CGAAAATGCCCCAATCGAAAGGAATGTGTTGAAATCAAAAAGTTCTCGTT
CCTTCTTCCTCCTGCTTAAGGAGACTCGAGCATCCCGCAGCATGGATTTC
CCCTCTCTCTGAGACGAGCGGTCACCTCCCCTGCACGTCGGCTGCCTGAA
CGAGCGTGTATTCGAGAAATCATCAACGATGTCATCGTCTGAGACTGGGC
GCTGTCGAAGTGCACTTTGACGATCCTTGCTATGAGTTCCTAGGCTTGGT
CTTGATTCTGACAAAGCTAGCGTGGTCGTTCCCTTTGTTATTGTCCTGGC
TGTCCGTTTTGATTCGCCCTTAGAGATGAATCGGTCACCCTCTGACTGTC
CGGTTCGGGGTTGGTTTACCTCCCACCAGGTAACTGTGACGGTGTGCGAT
GGACCCCCTTCTCCCAGGGCCAACTTCACGGTGACTTCCCTCCCCTCCGG
CGACATGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1904:2054..2761-

>mRNA_Ecto-sp13_S_contig1904.6049.1 ID=mRNA_Ecto-sp13_S_contig1904.6049.1|Name=mRNA_Ecto-sp13_S_contig1904.6049.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=156bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1904:2054..2761- (Ectocarpus species13 EcNAP12_S_4_19m)
GTTCGAGGGCTTGACGGAGGTCGACAAGCCAGTCCCCGCGAGAGGCTTCC
AGGGAGCCCGCCACCCTTGTTCGTGAAGGTAACTGTGACGGTGTGCGATG
GACCCCCTTCTCCCAGGGCCAACTTCACGGTGACTTCCCTCCCCTCCGGC
GACATG
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