mRNA_Ecto-sp13_S_contig19.6027.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig19.6027.1
Unique NamemRNA_Ecto-sp13_S_contig19.6027.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig19.6027.1 vs. uniprot
Match: D7FHB5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FHB5_ECTSI)

HSP 1 Score: 518 bits (1333), Expect = 4.680e-181
Identity = 291/360 (80.83%), Postives = 300/360 (83.33%), Query Frame = 1 
Query:    1 MMGIRSLSLVLSLACSPAGSFVLPATRLRSVAPLRHDCDVHYS-SAARSGTDAAVKGRERFMSMEMGLDPLRRRRYSCQPVSSHRSRSPPLRSQQVQASAEETTVSGDPTQETLPECISNDAVSYWVHPVKESNIWLVGVVHGTKSGVQQLVEEAIRGIRPEVVMVELDADRICVLPPGEAMETRNGLWWWAPEEEPEESADVDEYGDEDGEYAXXXXXXXXXXESVSPMIEIQTAVREAGACGARVLLGDRDYETTGRLLEKAKRADMASAKERKEFNDLTTSFDCEESTREITRKECAQMKERAPKVFKVMCTQRDQVMAKNLMKLRGEQTTVAVIGMAHLDGVEKVLKGHGWRRRRA 1077
            MMGIRSLSLVL LACSPA SFVLPATRLRSVAPLR DCDV YS  AARSGTDAAVKGRERFMSME+GL+P++ R  SCQPV +HRSRS PLRS+QVQASAEET +S DPTQETLPECISNDAVSYWVHP KES+IWLVGVVHG KSGVQ LVEEAI GIRPEVVMVELDADRICVLPPGEAMETRNGLWWWAPEEEPE SADVDE G    EYA   XXXX   ESVSPMIEIQTAVREAGACGARVLLGDRDYETTGRLLEKAKRADMASAKERKEFNDLTTSFDCE                               VMAKNLMKLRGEQTTVAVIGMAHLDGVEKVLKGHGW+RRRA
Sbjct:    1 MMGIRSLSLVLPLACSPAESFVLPATRLRSVAPLRLDCDVQYSRGAARSGTDAAVKGRERFMSMELGLNPVKHR-CSCQPVGAHRSRSLPLRSKQVQASAEETNLSADPTQETLPECISNDAVSYWVHPAKESHIWLVGVVHGAKSGVQ-LVEEAIGGIRPEVVMVELDADRICVLPPGEAMETRNGLWWWAPEEEPEGSADVDEDGXXXXEYAEDDXXXXDEEESVSPMIEIQTAVREAGACGARVLLGDRDYETTGRLLEKAKRADMASAKERKEFNDLTTSFDCE-------------------------------VMAKNLMKLRGEQTTVAVIGMAHLDGVEKVLKGHGWQRRRA 327
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BLAST of mRNA_Ecto-sp13_S_contig19.6027.1 vs. uniprot
Match: D7FHB7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHB7_ECTSI)

HSP 1 Score: 150 bits (379), Expect = 3.800e-38
Identity = 113/303 (37.29%), Postives = 157/303 (51.82%), Query Frame = 1 
Query:  289 ASAEETTVSGDPTQETLPECISNDAVSYWVHPVKESNIWLVGVVHGTKSGVQQLVEEAIRGIRPEVVMVELDADRICVLPPGEAMETRNGLWWWAPEEEPEESADVDEY-----GDEDGEY-----------------------AXXXXXXXXXXESVSPMIEIQTAVREAGACGARVLLGDRDYETTGRLLEKAKRADMA----------------SAKERKEFNDLTTSFDCEESTREITRKECAQMKERA-PKVFKVMCTQRDQVMAKNLMKLRGEQTTVAVIGMAHLDGVEKVLKGHGW 1062
            AS E    S +   E +P   SND VSY  +P   S IWLVGVVHG ++ V+ L +  +R  RP+VVM+ELD+ R+  LPPGEA +  +GL W+ PE++P+++  V +Y     G +D E                        A          E VS   E++ AV EA ACGARVLLGDRD+E T R L  A  AD                  S   RK+F  L      +  TRE   +  A MK  +  +  + M  +RD+VMA NLM ++G+  TVA++G+ H+DG+E++LK +GW
Sbjct:    9 ASHEGAQFSANARSEAVPAFTSNDGVSYLRNPDTGSEIWLVGVVHGQETSVE-LSKSVVRTTRPQVVMLELDSKRLDDLPPGEAQKAEDGLTWFMPEKQPDDA--VAQYVTLEGGGDDVELSRGDRWKGPFSFMSSSRAKSFVGAIKAMVDVFEEEEVS---EMEVAVLEAQACGARVLLGDRDFEETKRRLVAAGLADTVGDERLDDPEALLNDSMSVSNRKKFAGLDLR---KPETRETAGEHYAAMKRLSNQRALEAMVPERDEVMASNLMTIKGKPITVALVGLFHVDGIERILKRNGW 302
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BLAST of mRNA_Ecto-sp13_S_contig19.6027.1 vs. uniprot
Match: A0A6H5KLL9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLL9_9PHAE)

HSP 1 Score: 149 bits (375), Expect = 1.160e-36
Identity = 107/284 (37.68%), Postives = 148/284 (52.11%), Query Frame = 1 
Query:  331 ETLPECISNDAVSYWVHPVKESNIWLVGVVHGTKSGVQQLVEEAIRGIRPEVVMVELDADRICVLPPGEAMETRNGLWWWAPEEEPEESA-----------DVDEYGDED--GEYAXXXXXXXXXXESVSPMI----------EIQTAVREAGACGARVLLGDRDYETTGRLLEKAKRADMA----------------SAKERKEFNDLTTSFDCEESTREITRKECAQMKERA-PKVFKVMCTQRDQVMAKNLMKLRGEQTTVAVIGMAHLDGVEKVLKGHGW 1062
            E +P   SND VSY  +P   S IWLVGVVHG ++ V+ L +  +R  RP+VVM+ELD+ R+  LPPGEA +  +GL W+ P+++P+ +            DVD    E   G +A                I          E++ AV EA ACGARVLLGDRD+E T R L  A  AD                  S   RK F  L      +  TRE   +  A MK  +  +  + M  +RD+VMA+NLM L+G+  TVA++G+ H+DG+E++LK +GW
Sbjct:  119 EAIPAFASNDGVSYLRNPDTGSEIWLVGVVHGQETSVE-LSKSVVRTTRPQVVMLELDSSRLDDLPPGEAQKAEDGLTWFMPQKQPDNAVAQGVTSRGGGDDVDLPRGEKWKGPFAFMSSSRVKSFVGAMKAIIDVFEEEEVSEMEVAVLEAQACGARVLLGDRDFEETKRRLVAAGLADTVGDERLDDPEALLNDSMSVSNRKTFAGLDLR---KPDTREAAGEHYAAMKRLSNQRALEAMVPERDEVMARNLMTLKGKPITVALVGLFHVDGIERILKRNGW 398
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BLAST of mRNA_Ecto-sp13_S_contig19.6027.1 vs. uniprot
Match: A0A6H5K4M4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K4M4_9PHAE)

HSP 1 Score: 130 bits (326), Expect = 7.610e-30
Identity = 133/402 (33.08%), Postives = 186/402 (46.27%), Query Frame = 1 
Query:    4 MGIRSLSLVLSLACSPAGSFVLPATRLRSVAPLRHDCDVHYSSAARSGTDAAVKGRERFMSMEMGLD--PLRRR---RYSCQPVSSHRSRSPPLRSQQVQASAEETTVSGDPTQETLPECISNDAVSYWVHPVKESNIWLVGVVHGTKSGVQQLVEEAIRGIRPEVVMVELDADRIC--------------------VLPPGEAMETRNGLWW-----WAPEEEPEESADVDEYGDEDGEYAXXXXXXXXXXESVSPMIEIQTAVREAGACGARVLLGDRDYETTGRLLEKA-KRADMAS--------------AKERKEFNDLTTSFDCEESTREITRKECAQMKERAPKVFKVMCTQRDQVMAKNLMKLRGEQTTVAVIGMAHLDGVEKVLKGHGWRRRR 1074
            M +R+LSL L  A   A SFV+P   L   +       V        GT  A  G  +   + M L+   L RR   R     ++S  S S    S Q QA+A  T V   P  +  P  + +DAVSY  +P K+S +WLVG  H + S    LVE  IR I+P+VVMVELDA R+                     + PP E   TRN  +          + P      D +    G+ A          + +S   E   A+ EA ACGA++LLGDRD   T R L +A ++ D+                A +      + +S D  ++ RE  RK     KE AP+++  M  +RD+VMA NLM L G+Q TVAV+G+AH+DG+E +L  +GW+ +R
Sbjct:    1 MVLRTLSLALPFASLLAESFVVPPPSLSLSSASGSTWHVGSVRNPEEGTTTAATGNPKHPGLLMELENTQLDRRALLRTIGGALASLASASALTASPQ-QAAAAGTAVGRRPGAKRSPTFLCDDAVSYLYNPTKQSEVWLVGTAHISNSSAT-LVENVIRQIKPQVVMVELDAQRVGSFMKPSKQGEKTLADGTGKEIAPPAER--TRNPFFGAFFKQLLDPKVPVNDRITDFFAAALGK-AISKMYESMDQKGLSSGQEFTIAINEARACGAKLLLGDRDVRITLRRLSEALRKIDLQKISQSGQMETGLGLEALDGSSVESINSSLDILKN-RETMRKVIGFYKEEAPELYNAMIGERDKVMAVNLMGLDGKQVTVAVVGLAHVDGIEGILMANGWKCQR 396
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BLAST of mRNA_Ecto-sp13_S_contig19.6027.1 vs. uniprot
Match: A0A6H5LN04_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LN04_9PHAE)

HSP 1 Score: 105 bits (262), Expect = 1.310e-21
Identity = 67/161 (41.61%), Postives = 90/161 (55.90%), Query Frame = 1 
Query:  322 PTQETLPECISNDAVSYWVHPVKESNIWLVGVVHGTKSGVQQLVEEAIRGIRPEVVMVELDADRICVLPPGEAMETRNGLWWWAPEE-EPEESADVDEYGDEDGEYAXXXXXXXXXXESVSPMIEIQTAVREAGACGARVLLGDRDYETTGRLLEKAKRAD 801
            P  + LPEC+ +DAVS+  +P   S IWL+G++H  +  VQ LV+  IR I+P+VVM+ELDA+R  +LPPG   +  + LWWW P + +      V                     E V  + EI TA REA AC ARVLLGDR  E + R   +A+RAD
Sbjct:   83 PANDQLPECLQSDAVSHIRNPSTGSEIWLLGIIHQAEPYVQ-LVQSVIREIKPQVVMLELDAERTFLLPPGTPYQGEDKLWWWKPAKAKGRRPGAVSNRKKAKPRKTTRNQRNFYQDEHVG-VSEIWTAGREAQACRARVLLGDRSNEVSKRREREAERAD 241
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BLAST of mRNA_Ecto-sp13_S_contig19.6027.1 vs. uniprot
Match: A0A6H5KTH2_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KTH2_9PHAE)

HSP 1 Score: 102 bits (254), Expect = 2.400e-21
Identity = 77/226 (34.07%), Postives = 107/226 (47.35%), Query Frame = 1 
Query:  490 MVELDADRICVLPPGEAMETRNGLWWWAPEEEPEESADVDEYGDEDGEYAXXXXXXXXXXESVSP----------------------MIEIQTAVREAGACGARVLLGDRDYETTGRLLEKAKRADM---------ASAKERKEFNDLTTSFDCEESTREITRKECAQMKERAPKVFKVMCTQRDQVMAKNLMKLRGEQTTVAVIGMAHLDGVEKVLKGHGWRRRR 1074
            MVE+D  RI +LPPGEA +  +GLWWW   +E   +  V   GD D +            + +                        M E   A R+A ACGARVLLGDRD++ T R +  A RAD          +SA ++            E ++  + RK     K   P+ F V+ T+RD+VMA NL+K+   Q TVAV+G  H  G+  +LK +GW+ RR
Sbjct:    1 MVEIDPCRIKMLPPGEATKDGDGLWWWDAVQEAGPATAVSS-GDRDKDEVQAANTSRTPGDGLETATNAVARTRRRAKNDMNTDGMEMSEFYAAARQAVACGARVLLGDRDFQETTRRVSDADRADQEEAMSSLGDSSAGKKNTVEPRIKRRVLEGTSPALWRKLRDLEKTWKPRKFAVLVTERDEVMASNLLKVEEGQGTVAVVGAHHTIGIGGILKANGWKTRR 225
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BLAST of mRNA_Ecto-sp13_S_contig19.6027.1 vs. uniprot
Match: L1K338_GUITC (Uncharacterized protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1K338_GUITC)

HSP 1 Score: 82.8 bits (203), Expect = 8.710e-14
Identity = 78/248 (31.45%), Postives = 126/248 (50.81%), Query Frame = 1 
Query:  355 NDAVSYWVHPVKESNIWLVGVVHGTKSGVQQLVEEAIRGIRPEVVMVELDADR---ICVLPPGEAMETRNGLWWWAPEEEPEESADVDEYGDEDGEYAXXXXXXXXXXESVSPMIEIQTAVREAGACGARVLLGDRDYETT-GRLLEKAKRAD----MASAKERKEFNDLTTSFDCEESTREITRKECAQMKER-----APKVFKVMCTQRDQVMAKNLMKLRGEQTTVAVIGMAHLDGVEKVLKGHG 1059
            N  V+Y  HP  +  ++LVG VH +K   + +V E I  +RP+ VMVEL   R   I  +  G+   T + +   A     + SA V   GD+  E+           ++ +   E+  A+R A   GA+V+LGDRD +TT  RL E+   +D    +++       +  +T F  ++S +EITR +  +M +R     +  +   +  +RD++MA+ L +    Q  VAV+GMAH+DG+EK  K  G
Sbjct:   87 NGHVAYLRHPRLQQEVYLVGSVHISKKSAE-IVNEVILAVRPQAVMVELCEARKRAIVSIDQGQQTSTLDTILRMAGISRQQASAMV---GDKILEFI----------DAYTRGNEMLVAMRAAEQVGAKVILGDRDQQTTLRRLKEEFNLSDVLKLLSTPMSPSSQSIFSTPFAKQKSEKEITRDDARRMLQRLRDSCSSGMISALVDERDEIMAQTLARCNF-QRVVAVVGMAHMDGIEKRYKDEG 319
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BLAST of mRNA_Ecto-sp13_S_contig19.6027.1 vs. uniprot
Match: D7G9B8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G9B8_ECTSI)

HSP 1 Score: 75.9 bits (185), Expect = 6.410e-13
Identity = 37/71 (52.11%), Postives = 51/71 (71.83%), Query Frame = 1 
Query:  322 PTQETLPECISNDAVSYWVHPVKESNIWLVGVVHGTKSGVQQLVEEAIRGIRPEVVMVELDADRICVLPPG 534
            P  E LPEC+ +DAVS+  +P   S IWL+G++H  +  VQ LV+  IR I+P+VVM+ELDA+R  +LPPG
Sbjct:   29 PANERLPECLQSDAVSHIRNPTTGSEIWLLGIIHQAEPYVQ-LVQSVIREIKPQVVMLELDAERAFLLPPG 98
[Close]
BLAST of mRNA_Ecto-sp13_S_contig19.6027.1 vs. uniprot
Match: A0A1Y1IQP6_KLENI (Uncharacterized protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1IQP6_KLENI)

HSP 1 Score: 68.9 bits (167), Expect = 2.770e-9
Identity = 71/235 (30.21%), Postives = 114/235 (48.51%), Query Frame = 1 
Query:  394 SNIWLVGVVHGTKSGVQQLVEEAIRGIRPEVVMVELDADRICVLPPGEAMETRNGLWWWAPEEEPEESADVDEYGDEDGEYAXXXXXXXXXXESVSPMIEIQTAVREAGACGARVLLGDRD-YETTGRLLEKAKRADMASAKERK-EFNDLT---------TSFDCEEST-----REITRKECAQMKERAPKVFKVMCTQRDQVMAKNLMKLRGEQTTVAVIGMAHLDGVEKVLK 1050
            S ++L+G  H +K+  ++ V+E I  +RP+ V VELDA+R   L  G+  E +      A   E   +    + G +    A            + P +E + A+ EA    A ++L DR   ET  RL E     D+     R+ + N++          T  + EE+T     RE  R+  A M++  P V +VM  +RD+++   L +LRG    VAV+GMAH+DG+E++ K
Sbjct:   51 SEVYLIGTAHVSKASAEE-VKEVIHLVRPQYVGVELDAERAEKLMSGKMYEDQGSRGLLATLRELMHAPG--DIGQKVLTVAMRSMYKMLRDTGLEPGLEFKVAMEEAQKVNAEIVLLDRPAQETMARLREVLSLWDIVKLFTRRIDPNEVPPVLRDMGQITPQNIEETTEQLKTREAVRQITAFMEKLFPDVVRVMVHERDEIIFNRLRQLRG--CIVAVVGMAHVDGIERLWK 280
[Close]
BLAST of mRNA_Ecto-sp13_S_contig19.6027.1 vs. uniprot
Match: A0A4Y7K1D1_PAPSO (Uncharacterized protein n=2 Tax=Papaver somniferum TaxID=3469 RepID=A0A4Y7K1D1_PAPSO)

HSP 1 Score: 68.6 bits (166), Expect = 3.350e-9
Identity = 60/236 (25.42%), Postives = 102/236 (43.22%), Query Frame = 1 
Query:  394 SNIWLVGVVHGTKSGVQQLVEEAIRGIRPEVVMVELDADRICVLPPGEAMETRNGLWW--WAPEEEPEESADVDEYGDEDGEYAXXXXXXXXXXESVSPMIEIQTAVREAGACGARVLLGDRDYETTGRLLEKAKRADMASAKERKEFNDLTTSFDCEESTREITRKECAQMKERAPKVFKVMCTQRDQVMAKNLMKLRGEQTTVAVIGMAHLDGVEKVLKGHGWRRRRA*ANQSP 1095
            + I+L+G +HG+    + +V+  I  ++P +V VEL   R+  +      +  +  W+  +           +  Y     ++             + P +E + A+ E+   GA     D+D   T   L K    D+      +    + T F  E+ TR   R+   + K+R P + KVM   RD  M  NL   +G+   VAV+GMAH+DG+E + K    R     A++SP
Sbjct:   56 AQIYLIGTLHGSNQSAE-IVKTVIENVKPGIVAVELCEKRVGAM---NKQQPDDDTWYKLFRKSMRAPGGLSMKIY-----KFMLSCRRRRLNAYGIIPALEFKVAMEESARVGASCFYIDQDINVTHEQLSKVPSFDLLWKAYHESRLSVHTEFADEKHTRSSVRESSGKQKKRCPDIAKVMIEDRDNFMFTNLRNFQGK--VVAVVGMAHMDGIELLWK----RAEEEDASKSP 276
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig19.6027.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FHB5_ECTSI4.680e-18180.83Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D7FHB7_ECTSI3.800e-3837.29Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KLL9_9PHAE1.160e-3637.68Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K4M4_9PHAE7.610e-3033.08Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6H5LN04_9PHAE1.310e-2141.61Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KTH2_9PHAE2.400e-2134.07Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
L1K338_GUITC8.710e-1431.45Uncharacterized protein n=1 Tax=Guillardia theta (... [more]
D7G9B8_ECTSI6.410e-1352.11Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A1Y1IQP6_KLENI2.770e-930.21Uncharacterized protein n=1 Tax=Klebsormidium nite... [more]
A0A4Y7K1D1_PAPSO3.350e-925.42Uncharacterized protein n=2 Tax=Papaver somniferum... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig19contigEcto-sp13_S_contig19:21740..28446 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score131.0
Seed ortholog evalue1.1e-27
Seed eggNOG ortholog2880.D7FHB1
Model size1400
KEGG rclassRC00034,RC00767,RC02141,RC02755
KEGG koko:K03781
KEGG ReactionR00009,R00602,R02670
KEGG Pathwayko00380,ko00630,ko01110,ko01130,ko01200,ko04011,ko04016,ko04068,ko04146,ko04211,ko04212,ko04213,ko05014,map00380,map00630,map01110,map01130,map01200,map04011,map04016,map04068,map04146,map04211,map04212,map04213,map05014
KEGG ModuleM00532
Hectar predicted targeting categorysignal peptide
Exons9
EggNOG free text desc.TraB family
EggNOG OGsCOG1916@1,KOG2860@2759
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-03_004070.1
EC1.11.1.6
Cds size1080
COG Functional cat.KLT
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig19.6027.1prot_Ecto-sp13_S_contig19.6027.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig19 22060..28446 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462969.6126869-UTR-Ecto-sp13_S_contig19:21739..220591681462969.6126869-UTR-Ecto-sp13_S_contig19:21739..22059Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig19 21740..22059 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462969.6239429-CDS-Ecto-sp13_S_contig19:22059..221851681462969.6239429-CDS-Ecto-sp13_S_contig19:22059..22185Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19 22060..22185 -
1681462969.6412451-CDS-Ecto-sp13_S_contig19:22964..230571681462969.6412451-CDS-Ecto-sp13_S_contig19:22964..23057Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19 22965..23057 -
1681462969.6520367-CDS-Ecto-sp13_S_contig19:23557..236561681462969.6520367-CDS-Ecto-sp13_S_contig19:23557..23656Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19 23558..23656 -
1681462969.6653037-CDS-Ecto-sp13_S_contig19:23904..240021681462969.6653037-CDS-Ecto-sp13_S_contig19:23904..24002Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19 23905..24002 -
1681462969.6784477-CDS-Ecto-sp13_S_contig19:24344..244201681462969.6784477-CDS-Ecto-sp13_S_contig19:24344..24420Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19 24345..24420 -
1681462969.6975086-CDS-Ecto-sp13_S_contig19:26071..261131681462969.6975086-CDS-Ecto-sp13_S_contig19:26071..26113Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19 26072..26113 -
1681462969.7065537-CDS-Ecto-sp13_S_contig19:26597..266991681462969.7065537-CDS-Ecto-sp13_S_contig19:26597..26699Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19 26598..26699 -
1681462969.7167578-CDS-Ecto-sp13_S_contig19:27263..274891681462969.7167578-CDS-Ecto-sp13_S_contig19:27263..27489Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19 27264..27489 -
1681462969.7263253-CDS-Ecto-sp13_S_contig19:28228..284461681462969.7263253-CDS-Ecto-sp13_S_contig19:28228..28446Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19 28229..28446 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig19.6027.1

>prot_Ecto-sp13_S_contig19.6027.1 ID=prot_Ecto-sp13_S_contig19.6027.1|Name=mRNA_Ecto-sp13_S_contig19.6027.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=360bp
MMGIRSLSLVLSLACSPAGSFVLPATRLRSVAPLRHDCDVHYSSAARSGT
DAAVKGRERFMSMEMGLDPLRRRRYSCQPVSSHRSRSPPLRSQQVQASAE
ETTVSGDPTQETLPECISNDAVSYWVHPVKESNIWLVGVVHGTKSGVQQL
VEEAIRGIRPEVVMVELDADRICVLPPGEAMETRNGLWWWAPEEEPEESA
DVDEYGDEDGEYAEDDEDVDDEEESVSPMIEIQTAVREAGACGARVLLGD
RDYETTGRLLEKAKRADMASAKERKEFNDLTTSFDCEESTREITRKECAQ
MKERAPKVFKVMCTQRDQVMAKNLMKLRGEQTTVAVIGMAHLDGVEKVLK
GHGWRRRRA*
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mRNA from alignment at Ecto-sp13_S_contig19:21740..28446-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig19.6027.1 ID=mRNA_Ecto-sp13_S_contig19.6027.1|Name=mRNA_Ecto-sp13_S_contig19.6027.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=6707bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19:21740..28446- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGATGGGGATCCGATCATTATCGCTCGTGCTTTCTCTCGCATGTTCGCC
AGCTGGATCGTTTGTCCTGCCGGCGACAAGGTTGCGGTCCGTAGCGCCGC
TGCGACACGATTGTGACGTTCACTACAGCAGTGCGGCCAGGAGCGGAACT
GACGCTGCGGTCAAGGGCAGGGAGCGTTTCATGTCCATGGAGATGGGGCT
CGACCCTCTCAGGCGTCGGTGAGAAATCAGTCACTGTGTTGTAATCGAGG
AAGGGGGGCTAGTGGTTTGTTCTTACCAACAATCGCCAGAGTTGTCGAGT
CAACCTTCCCCAGGCCTTTGTTCAAACTTAAAACCGGGTCGTCCGTTCTC
GTACGCTCCAGTACAGCAGTAACCAGATATCATGATGGCCGACCGCCGCG
ATGTGCCCTGCTCAACGATTAAAAGTCGCGTCAGCTGTTGATGTCTCTGG
GATTATACAGTTTTTGTTTGACTTGTGCTCGCGACCACCGCCGTCCATTT
CCAATCCCTTTCACGTGTGCACATCGGCGGCAACAGTAACGACAGACCCA
TTTGCTCTTTGCTGCGCAACCAGCATCAGCAACATGTGGAACATCAACAA
CGCACACACCCTCGTATTTTCGCCAACGTTGCTCTTTTCACAGCTTATTC
TCAGTCCCTATGCCGTAGGCACCTCGTTTTCAAACCCGCGCTGTAAAACA
ATTATCTCAAGGTTACGCAACTACACTTCCGAGTACCGAACAAACTTGCC
AGACACACCTTTGCGGGTGTATAATACTGCTGTGGCACGAACCACAGCAA
CCGAACCCCAACATATTTCCCTGGACGCATTGAAAATCGCTGTATTACGG
TGTTGAGGTTTGGGACGTTCGAATGGTTCAGCATAGTGTATCACGTTGGT
CGTGTTCAACAGTCGTCATCAACTTCTGGTCCCTGTTTATTGCCGGTCTG
TTTTCAGCAGATATTCATGCCAACCGGTGAGCTCACACCGCTCCAGATCT
CCACCTCTGAGGAGCCAGCAGGTGCAGGCATCAGCGGAGGAAACCACCGT
GTCAGGGGATCCAACACAAGAGACGTTACCCGAGTGCATATCAAACGATG
CCGTATCCTACTGGGTACACCCGGTAAAGGAATCAAACATCTGGCTTGTG
GGAGTTGTCCACGGCACCAAGTCCGGGGTGCAGGTAAGAGTAAATCATTG
TGCAGTTGTTGGTGGCCACGTGTTGTGCCTGGGAACTTCGTTTTTTTTTC
GGTGCGCTCCCTGTACTTTTGCAGTCCATCTGTACTTTTACAGCGCCAGC
GTTGACAGATAGAGCACCGGAGCCTTGGCCTGTCGGGTATTCCGCGTTGC
CGCGCCCCGGCACAGTTCCTCTCACCATTTGTCCCTATTCCCCTAGCAAC
AAAGTTTCCTGCCGAATGATGAGATTTGGGCGAGTGCGGTTGAAGGGCTG
AAGACACTACAGCAAACCCAGTTTGGCGCAGCCAAAGGGGGCTGCACGGG
GTGGTGCCGATTTTGTCCTAACCGCTGGCTGTGCAACTGTATATCTCCTG
TGAAGTTCGCACGTTTTCGATTCTGCAGCACCCCAACTCGTTGGAGGACG
CCCCAGGTCTATGTTGTTTCGTTTAGGAACAATGTTTCTTCGATACTACC
CCCGTCCATTGCTAGTTCTAAGCCTACAATATTCTGGGTCACCGATACAG
ACTGCCATGTCCCTCTCTCTGCATGTGGGTGCCTTCTCTCCGCCGAGCAG
TTGGTGGAGGAAGCGATCAGGGGGATTAGGCCAGAAGTCGTCATGGTGGA
GCTGGATGCGGATCGCATTTGTGTGCTGCCCCCAGGGGAAGCAATGGAGG
TGGGCGCGGCTCCGAACTTTGGTTGTTAGGACCGTCGTGTTTGTTGGACC
TTCAGGCACAAACGGAAGCGACCACGTCGAATGCTGTAAGCGACGACTGG
GTCGCTGGATCCATCAGCCCCAGCCCCCAGAGAGCCGTTGTCTTTAGTAC
AGGGACAAACGGCTTGGGTTCCTGTAGGATGGGAGTTTGTTCCTATCATG
TAGTAGCTTTGCGATCCCGCCCGCCCGCCCCATGTGCCGTTCGTAGCGCC
CTTGAGCACGCCATTGAGTGCATGTCGTACCTGTTTGTTTGAATAGAAAG
GGGAGGAATCGCTATACACTGCTGGGGAAAACACAGGTAGCTTCCGCTAA
CGCCATGAAGTCACTGCAAATCTATCCCCGACTCATCTGTGGAGATAAAA
ACACTTGGTGTGTCGCAAGTGAGAAAATAATTAGCTTTTATGCTGCCGTG
ATTTCCGCCTTTCGACGTGCTCCTGTCGCGCAGACCCGAAACGGCCTTTG
GTGGTGGGCACCAGAGGAAGAACCGGTAAGGACGAGACTTCTTGTAGCGT
GATAATGTTCCTGTGTTGTGTGTTGAAAATCAAAAGCTTAGGGTCTGCTA
AGCCTGTAGTCAAGGACAGTCCCCTGATGGTTTTGCCTGTGCTAGATTGC
TTTGTGTTTTCCTTTCAGCGAAGGTTGGATATACTGAAAAGAATCCCTCA
CTAAAATCAAGAAAGTAGGCTGGTGACGGAAATGACCAGTGCTACGGCAG
TCTCAGCAGTGAGCAAACGTGTGTTGTTGACAGGGATACGGAGGTGCACC
GTAGAACGTTTACAACAAAATGGAATTTTGTTCGAAGAGAAATGAGGAAA
AACGTGTCGCACAAATTGTTGGATTGCAGCTAGGTAGGAAACAGATTGAG
CCCGGTGGAGTGCGTGCGCTCTGCCTGGTGAGCTTATTACCAGTCCGGAA
ACGTTCCGAAAACGTTCCGGAAACGTTCCGGAAACCAAATACCCTTCTAA
AGGACAAAAAGGACTGTTCCGGAAACGTTCCGGGAACCATACAGTTGTAC
TCTGGATTTTTCCTGTTAACGTTCCTAAGAGTCGTTCGAGGAATTTGTGC
CCGACCTCGGAACCATTCTACACACCGTTACGGCATCGACTGTAGCTCTG
AGTGGATCGTTCTTGATACATTTCCTGAAATATTGTCGTTCAAGTTGGAG
TTCCTCAATAGCTTACTACACCCCAATCAGTGTGTCATGTCACGTACAGT
GAAACCGGTAATGTTTTGTGGTACTGAAATCGCTTATGGTGTATGTGACA
TATTTCAGTGTTGTGTTAATGAGAAAACTTATTTCAACAGTCTCTCGGTT
GATACTGATATTTTTCTACTACTCCTCGGTTGAGGTCGCTCAAAGCATCG
TACACGGCGATTACTTGATCAAGCAAGGAAAAAAAACAAATTTGCCGAAA
TGTGAACTCCACCTCGTTTTTTCAGAAGTAGAGTATACAATGGCTCTATT
CCATGTCACCGTCACCACCACCAGCTTGGGAGACGGTTCCACCTCCGGGG
CAAACTTTCCCTGTGACCCCCTTACGCGACGTTTGCGCCGACCAAAATGA
GGTCAAATCGCTCTCTCCCGAGTTCTCGAGTGAGACGGTACAACCGTCAT
CACCTCCTTGGGAGCACCAACCAGACCTCAACCGTTGTTTGGACTGGCTG
AAGCAACTTTTCTGGTGGACAACTTTCGGAACACTCCAAAGACTCCGACT
ACGTGACGCCTCCTTGTGACTCTGTGCTTTCAGCTTTCCCTGGCCTTCGA
ACGCTCACCCGCCTAAGACTGGGTGTCTCGACGACGACTGGCGGTTGTTG
GAATCACGATGGCCGTAAAAAAGGACTGAGAAGCAGAGAATGTAGCATTT
CTTCGGCAACGAGTAGCTCTACTACAGGGCAGGGGCAAACGTACGGAAAC
GTCGCGTGTTTGTTGGATCGGTTCAGGCATGGGACATGCTGCCTGCTGTC
CCGATCGCATCTTTGCGGTTTCACTTGCCGTCGTACGCCGCGAGTAAATC
GCCCGCAAACTAACCCCGGCACATGCAGGGGAGTCTTGATTGGCTTAAAA
ACCAATCGTTTTTTTTGTAGTGTGCAGACGGCCCAGAGTTTTGTTTTGGA
CTGCTGTAACCCGCCGTTCGAAACAGGAGGAATCAGCTGACGTAGATGAG
TATGGTGATGAAGATGGAGAATATGCGGAGGACGACGAGGACGTGGATGA
CGGTGAGTAGGAGGTACACTATGCAACGCGGTGGGCGCAGGTAACCCTAT
GGCGTCATTTGTTCGAGGCCCTGACCACGAAACACAACGAATGCAGTGGT
CCGTAGGGTTATAAGTAAGAATGAGCGGCGATAACCCCTTGAAGTGCGAA
ACATTCACGATTGATGTGCTCTCATGTGTCTGATGTACACAGCCGCCCTC
GGCCCTTGCAATAATCTGAACACGGCGAATTCAGTTATCGCCGGTGCCTC
TCGAAGTTATGTATACTCTTCAGGTGTGCTGGCGATACCGGTGTTCATTG
TGACACCCGCGGTTTGTTTCCCCCCTCGACTTACATGCCTTCAGAGGAAG
AATCGGTTTCACCCATGATTGAAATCCAGACTGCAGTACGCGAAGCGGGA
GCGTGTGGTGCGAGAGTGCTCCTCGGAGACAGGGACTACGAGGTGCGGAA
CCATGTGGTTTGATGGCGCGTACTTCTGGACTTGCGGGTTGGGTTCCTGT
TCAGCGTGATCCGCAACAGAGTGCAGCGGAAACTCCGCCGCCCTTTACGT
TTACGGCTCCGTTGCGTGGGTTGGCTACGTCGTGCTCGCTTGCTGCCACC
CGTTCATTTGCGGAGAGGGGGGTAACGCCTCAGATTTTTTACCCCTGTCC
ACCATCCCCTGATTGTCTCTGGTGGGCGTTTTCGCGATAGACGACGGGTC
GTCTACTGGAGAAAGCGAAACGAGCGGACATGGCTAGCGCCAAGGAGAGG
AAAGAGTTCAATGATCTCACCACCAGTTTTGATTGCGAGGTGAGCCCTCT
GTCTAGAACGACGGACTCTCGCGCCGGGCGTTTGTTTCGCAAGTTATTTT
GCACCGCACTCCCCCTGTCTCAACGCGCACCCAGGAATGTAACTCTGTTG
CCAAAGTTTAGCGACTAGGTTTGCACAACCAACCCGCCAATAGGTAAACC
TTCGCAGCTCCCTACCGAGTGAGACGCACTCGAAGCTTTTGATTCAGATT
GAGGTGCGTTCACAAGGAGAAGTGGAACGGAAGCAGGGTGCCCCCTCCAA
GCTGTTGTGAACACTGGCCTTCCATTGAGGCGGATTTGTATTTTGAAGTG
CCCATCTTGCCGGTGTGAATAGCCAAGGTTCCCTTTCTCGCTGTACCCGG
ACGGACGTCCATCTGGTGAAAGTTTGTGTGGCACAGGGCTTTGGATTTTT
GCTTTCTCCAGGATTCGGTGGTTGCCTCACGCTCTTTCACAGCACCTTGC
GCTCACGTCAGATCGTTTTCGGTAAATCACGCCGGGCAGGAATCAACACG
CGAGATTACACGCAAGGAATGCGCGCAGATGAAGGAGCGAGCGCCAAAAG
TGTTCAAGGTCATGTGCACACAACGAGATCAGGTGCGTGTACATCCCCTG
CCCTTTGTCTCTTCCTCTTGTGCATTGAAATTCGACGTCACGTTTCATTC
GTCAGAGGCTCGAGAGAATGTGTCGCTGAAGCCTTTTCATATTTTGCTGA
CGACTTGTTCGCGGGAAGATTATGATCTGTGTGGCACCAACTCCTTCCGG
TTGACTGAGGCCACGTCGCACATGGTACGTTAAAACTGCGAGCGACTACA
ATGAATTGGATGGCTATGACTTCATACAGTACCCGGCTTTCACCTCTCTA
TTTGAGAAGCTCATTGGGCTTGGAAGGCCAACTCCGGCCTACCGCTCTAA
TAGCACGCGCGCTGTAATTGCGGCCCGCCAAGTGTGCTTCTTCAATGTCC
TCTCATTGGTTGTTGTTGTAGGATTTGCCTCTGCGCTATGATGCTCCGAA
AGTCTGAAACGTTGCACGGAGATTTTCCTCTGGGGTGATGAATGTCCGAG
AAACAATCGTTGTGCCGTTGTTGCGTGCGGTTCGCCTCGCTTCGCCTCAG
TCAGACACTTGGCGAAAAACAGATGAAGTTTCCGTGTATGAATTCGTTCG
AAAAGTCCCTGCCGTGATGTAGGACGCCCGTGACAATCGTGCCGGCTCAC
ACTGAAGCTCTTTACGATTCTGCCGATCCCTTCGTATGCTACTGCAGGCG
ACCAGCTCAAGGTAGCATCATTCTTTCACTCTGAAACCGATCCCGTCAAT
GTCCCTGGCAATCGTTAATCTGCGAGTAAATATGTTGAATGTCGTTGTCT
TGCTTCCGCAGGTGATGGCGAAGAACTTGATGAAGCTGCGGGGAGAGCAG
ACGACGGTAGCGGTGATCGGAATGGCACACCTTGATGGCGTCGAGAAAGT
GTTGAAGGGTCACGGCTGGCGGCGTAGACGGGCGTAGGCGAACCAATCCC
CTAGAAATAGCAGCGGTGCACCCAGTTCTCATTCTCCCGGACGGGGCTTA
CGGCATGGTGCGAACCAGTGGTGTTCTCAAGGAACTGTGGAATTGTTGAT
GCTGTTGTTGTCATCACATGAATAACCGTTCCGGTCTACTCTCAGTTTTT
TGTAATGTCCGTACTGGTCCAACTGACGCGGACGCCTTTCGTGGTCACAA
ACCAACTGCCCCCAATGGGGGGGTACACCTTCCAAATCATGAAACAGGAC
ACCACAAAAAAATTCTCCATCGCGCGATTTGTTCTCTACCCAAAAAAAAG
TAAAAGC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig19:21740..28446-

>mRNA_Ecto-sp13_S_contig19.6027.1 ID=mRNA_Ecto-sp13_S_contig19.6027.1|Name=mRNA_Ecto-sp13_S_contig19.6027.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1080bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19:21740..28446- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGATGGGGATCCGATCATTATCGCTCGTGCTTTCTCTCGCATGTTCGCC
AGCTGGATCGTTTGTCCTGCCGGCGACAAGGTTGCGGTCCGTAGCGCCGC
TGCGACACGATTGTGACGTTCACTACAGCAGTGCGGCCAGGAGCGGAACT
GACGCTGCGGTCAAGGGCAGGGAGCGTTTCATGTCCATGGAGATGGGGCT
CGACCCTCTCAGGCGTCGCAGATATTCATGCCAACCGGTGAGCTCACACC
GCTCCAGATCTCCACCTCTGAGGAGCCAGCAGGTGCAGGCATCAGCGGAG
GAAACCACCGTGTCAGGGGATCCAACACAAGAGACGTTACCCGAGTGCAT
ATCAAACGATGCCGTATCCTACTGGGTACACCCGGTAAAGGAATCAAACA
TCTGGCTTGTGGGAGTTGTCCACGGCACCAAGTCCGGGGTGCAGCAGTTG
GTGGAGGAAGCGATCAGGGGGATTAGGCCAGAAGTCGTCATGGTGGAGCT
GGATGCGGATCGCATTTGTGTGCTGCCCCCAGGGGAAGCAATGGAGACCC
GAAACGGCCTTTGGTGGTGGGCACCAGAGGAAGAACCGGAGGAATCAGCT
GACGTAGATGAGTATGGTGATGAAGATGGAGAATATGCGGAGGACGACGA
GGACGTGGATGACGAGGAAGAATCGGTTTCACCCATGATTGAAATCCAGA
CTGCAGTACGCGAAGCGGGAGCGTGTGGTGCGAGAGTGCTCCTCGGAGAC
AGGGACTACGAGACGACGGGTCGTCTACTGGAGAAAGCGAAACGAGCGGA
CATGGCTAGCGCCAAGGAGAGGAAAGAGTTCAATGATCTCACCACCAGTT
TTGATTGCGAGGAATCAACACGCGAGATTACACGCAAGGAATGCGCGCAG
ATGAAGGAGCGAGCGCCAAAAGTGTTCAAGGTCATGTGCACACAACGAGA
TCAGGTGATGGCGAAGAACTTGATGAAGCTGCGGGGAGAGCAGACGACGG
TAGCGGTGATCGGAATGGCACACCTTGATGGCGTCGAGAAAGTGTTGAAG
GGTCACGGCTGGCGGCGTAGACGGGCGTAG
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