mRNA_Ecto-sp13_S_contig18944.5998.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig18944.5998.1
Unique NamemRNA_Ecto-sp13_S_contig18944.5998.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig18944.5998.1 vs. uniprot
Match: A0A6H5KYW8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYW8_9PHAE)

HSP 1 Score: 490 bits (1262), Expect = 1.040e-163
Identity = 258/287 (89.90%), Postives = 271/287 (94.43%), Query Frame = 1 
Query:    1 KADAELGLRLLREIHVSTGYSPNAWHYGGVFLSFLKAGDETGALAIQSEWRDIQACNAREAMERMRPGAEKSGGADSDGSERRSRNGRTDPNSDKNGARTAQRDAAIQDPEGQRAVVELAAAAPGDRFQPLDLLCLAAFHADNGAWSDCLDVLGTAQEVSRTARAAVRAKANELLLGRTERGEVIGKVGAATGLAGAGLASWRKVAAENSEATERADEASKALRGCYESAVEALGRAGRHKQALQAKEGSSATVKHGLAMDPACFVSALRSCCRNDTNSEDSGSEAG 861
            + DAELGLRLLREIHVSTGYSPNAWHYGGVFLSFLKAGDETGALAIQSEWRDIQACNAREA ERMRPGA++S  A+ D SERRSR+GRTDPNSDKNGAR+A+R AAIQDPEGQRAVVELAA APGD FQPLDLLCLAAFHADNGAWS+CLDVLGTAQEVSRTARAAVRAKANELLLGRTERGEVIG VGA TG AGAGLASWR+VAA+NSEATER DEASKALRGCYESAVEALGRAGRHKQALQAKEG+S TVKHGL+MDPACFV ALRSCC NDT+SEDSGSEAG
Sbjct:  547 QGDAELGLRLLREIHVSTGYSPNAWHYGGVFLSFLKAGDETGALAIQSEWRDIQACNAREATERMRPGADRSFSANGDSSERRSRSGRTDPNSDKNGARSAKRGAAIQDPEGQRAVVELAAVAPGDHFQPLDLLCLAAFHADNGAWSECLDVLGTAQEVSRTARAAVRAKANELLLGRTERGEVIGNVGATTGFAGAGLASWRQVAAKNSEATERVDEASKALRGCYESAVEALGRAGRHKQALQAKEGASVTVKHGLSMDPACFVPALRSCCCNDTDSEDSGSEAG 833
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BLAST of mRNA_Ecto-sp13_S_contig18944.5998.1 vs. uniprot
Match: D7G394_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G394_ECTSI)

HSP 1 Score: 357 bits (917), Expect = 2.500e-119
Identity = 198/224 (88.39%), Postives = 207/224 (92.41%), Query Frame = 1 
Query:  193 MRPGAEKSGGADSDGSERRSRNGRTDPNSDKNGARTAQRDAAIQDPEGQRAVVELAAAAPGDRFQPLDLLCLAAFHADNGAWSDCLDVLGTAQEVSRTARAAVRAKANELLLGRTERGEVIGKVGAATGLAGAGLASWRKVAAENSEATERADEASKALRGCYESAVEALGRAGRHKQALQA-KEGSSATVKHGLAMDPACFVSALRSCCRNDTNSEDSGSEAG 861
            MR GA+ SGG D D SE RSRNGR DPNSDKNGARTA R  A QDPEGQRAVVELAAAAPGDRFQPLDLLCLAAFHADNGAWSDCLDVLGTAQEVSRTARAAVRAKANELLLGRTERGEV+G VGA TG+AGAGLASWR+VAAENSEATERADEASKALRGCYESAVEALGRAGRHK+ALQ  +EG+S TVKHGL+MDPACFVSALRSCC NDT+SEDSGSEAG
Sbjct:    1 MRRGADGSGG-DGDCSEHRSRNGRIDPNSDKNGARTAHRGVAKQDPEGQRAVVELAAAAPGDRFQPLDLLCLAAFHADNGAWSDCLDVLGTAQEVSRTARAAVRAKANELLLGRTERGEVVGNVGATTGVAGAGLASWRQVAAENSEATERADEASKALRGCYESAVEALGRAGRHKEALQVLEEGASVTVKHGLSMDPACFVSALRSCCCNDTDSEDSGSEAG 223
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig18944.5998.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KYW8_9PHAE1.040e-16389.90Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G394_ECTSI2.500e-11988.39Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig18944contigEcto-sp13_S_contig18944:2..2886 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size861
Hectar predicted targeting categoryother localisation
Exons5
Cds size861
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462967.1793036-CDS-Ecto-sp13_S_contig18944:1..1231681462967.1793036-CDS-Ecto-sp13_S_contig18944:1..123Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18944 2..123 -
1681462967.1894407-CDS-Ecto-sp13_S_contig18944:738..9001681462967.1894407-CDS-Ecto-sp13_S_contig18944:738..900Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18944 739..900 -
1681462967.199003-CDS-Ecto-sp13_S_contig18944:1577..16801681462967.199003-CDS-Ecto-sp13_S_contig18944:1577..1680Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18944 1578..1680 -
1681462967.2089138-CDS-Ecto-sp13_S_contig18944:1945..22481681462967.2089138-CDS-Ecto-sp13_S_contig18944:1945..2248Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18944 1946..2248 -
1681462967.2190235-CDS-Ecto-sp13_S_contig18944:2715..28861681462967.2190235-CDS-Ecto-sp13_S_contig18944:2715..2886Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18944 2716..2886 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig18944.5998.1prot_Ecto-sp13_S_contig18944.5998.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig18944 2..2886 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig18944.5998.1

>prot_Ecto-sp13_S_contig18944.5998.1 ID=prot_Ecto-sp13_S_contig18944.5998.1|Name=mRNA_Ecto-sp13_S_contig18944.5998.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=287bp
KADAELGLRLLREIHVSTGYSPNAWHYGGVFLSFLKAGDETGALAIQSEW
RDIQACNAREAMERMRPGAEKSGGADSDGSERRSRNGRTDPNSDKNGART
AQRDAAIQDPEGQRAVVELAAAAPGDRFQPLDLLCLAAFHADNGAWSDCL
DVLGTAQEVSRTARAAVRAKANELLLGRTERGEVIGKVGAATGLAGAGLA
SWRKVAAENSEATERADEASKALRGCYESAVEALGRAGRHKQALQAKEGS
SATVKHGLAMDPACFVSALRSCCRNDTNSEDSGSEAG
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mRNA from alignment at Ecto-sp13_S_contig18944:2..2886-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig18944.5998.1 ID=mRNA_Ecto-sp13_S_contig18944.5998.1|Name=mRNA_Ecto-sp13_S_contig18944.5998.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2885bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18944:2..2886- (Ectocarpus species13 EcNAP12_S_4_19m)
AAGGCTGACGCAGAGCTCGGACTTCGACTCCTGCGGGAGATCCACGTGTC
TACAGGGTACTCGCCTAACGCCTGGCACTACGGCGGGGTCTTCCTTTCTT
TCCTTAAGGCTGGGGATGAAACTGGGGCCCTCGCTATCCAATCGGAGTGG
AGAGATATCCAGGCATGCAACGTTCAGAGCGTGGAAGTTGTGTTCGCCCC
CATGGCGTCATGATGTCTGGAACAAATGATCACTTTGATCTTAAGCACTT
GAAACTGTTCGTTGGAAGGGACAGCGAAGACGAAGGTTTACCAAATTGGT
GTTCTTACAGACCAAATGGGAAACATCGTGTTTTCAATTCCCAGTTCAAT
GTACTGGGCATCATTCTGGGGATAAGAAGGGCACACAGCCCTCTACATGG
GAATGCCTATGGTCGCGGTATGGCTGAACTGGTTTCACCATGTACAATCA
CTGGCAATATATCCAGTATATATACCCTACATCACCACCATGCTGGACGG
AGTCACTGGGCGAAATTCTCCGATGAGGTCACCATTGGGCCCGCGAAGTG
GGTTTATATGGTTGTGGGGATCGCTTGTTGTTGTTTACATACCTACACTG
TGCGTTTTTCGACCCACTGTTTCTGATTCTTATCACAGGCACGCGAAGCC
ATGGAGCGCATGCGTCCGGGAGCCGAAAAAAGTGGCGGTGCAGATAGTGA
CGGCTCGGAACGTCGCTCGCGAAACGGTCGCACCGATCCCAACAGCGATA
AAAACGGCGCAAGGACCGCGCAACGCGATGCAGCAATACAAGATCCAGAA
GGACAGCGTGCGGTGGTGGAACTGGCGGCTGCGGCCCCAGGAGATCGTTT
CCAGCCTCTGGATTTGCTTTGCTTGGCGGCGTTTCATGCGGATAATGGCG
CATGGTCGGACTGTTTAGATGTTCTCGGCACGGCGCAGGAGGTACGAAAT
TTTGTACACGAACAAGGAGATGGTACAGCTGTTTCAATCGATCACGCACA
TGTGTGCCACTTTACATTTGTGTGCCAACCGTGGTCGATTTCTGCAGCTT
GCAGGCGTACGCAAGCTACCCTTTCCGTGAGACGACCCTTTTCCTCAACA
CTGACGAAGCGACGAACCGATGAGCATTCCCACGATTTTATATCGGTGCA
ATGGCTGGTCATAGTCAGCTGCCCTTCCTCGTTGTCGCCAACCCATACAC
AAACAGGTGAGCCGGACCGCCCGAGCGGCAGTTAGGGCCAAAGCGAACGA
GCTGCTTCTCGGCAGGACGGAACGAGGCGAGGTGATCGGCAAAGTTGGGG
CAGCGACCGGTGAGGATTGACCCCTTTTCTCCGTTCCTTGTGTCCCTGCC
AATAATCTTCTTGCGATATTGGATCCAATAGTTTGACTGAATGTGGAGCA
TGTCGTTGGCAAGAAGCATTCAAAACGGGATATTTTAAAGCAAAGTGTGT
GGTTTAAGGAAGTGCTGCGATAGTGTACCATAAATGCGTTGTTCAGTTGT
TTGTTGCCGCGCAGCCTTGGGCAGAAGCAGATCTTTCCTTTTCGCTTTCG
GGAATGCGTTGGTTTTTTTCCGGAGTTTCTTTCCAACTGGTGGGAGTCCC
TTGACCATGATGGATTTATTGTCACAGTCTCCGTTGCTGTTGTTGCTTGT
GCTACGTTTGGTGTTGGTCGAATAGCAGATGATGCCAGATCAAAACTTTC
CCAACGAAGCACTGCCACCTCAAAAGGAAGGCCTTGGGATATCAGTTTCC
GTGCCATCTAGCGCCTTGGACTGGTTGCGCCTGCAGGCGCCGGCATCGGT
CATCTAGCTTGTCTACGAACCGTGTGTTTGTTTGGGGACGTTGTTAGGCC
TGTCCATCTCGCAAACGCTGCATGCATCACGAGCAGAAAGAAACAAATGG
CAGCAGCAACAACTTCAAGAAAATGTGAACGCGGACCGCTGAACATGGAA
AGATTGACTGCAACGACCGGCAACGATCGTCCGTAGGGCTTGCTGGTGCC
GGGTTGGCTTCCTGGCGAAAGGTCGCGGCAGAAAACTCCGAGGCTACGGA
GCGGGCTGACGAGGCTTCAAAGGCGTTGAGGGGCTGCTACGAGTCCGCGG
TGGAAGCGCTTGGCCGCGCAGGGCGCCACAAGCAGGCCTTACAGGCAAGT
TTCGGGTATTTGTTTTGCTCATCGTTCCAGGTCCCACTGCTGCCGTGGCC
AACGATGTGAGCCCTTGCCAGTAGGCTCGAGGCAATGATGTCTTGGTGTT
GTTCGCGTCTGTTAGTTAAGTTGACGTCCAAGGTAGAGATTATGCGAAAG
ACGTAAGACATAATCTTGTATTGCGTTTGAGGTTGGGCATTTTGTTGCGT
TGGCCCTGATGCGGTTGCAAATTGTAGAGATTGTCATGAAGGACTTCAAT
AGTCCCGCAGAGATAGGGCAAGGACTATTCAATGAGCTTTAAGATGAAAT
TTTAGTAGGTGAGCAGGGAAGTTGCTATTTACTTGGTTCCCCGTTCGACC
CCTTGGACATGTTGGCGATTCTTCACATGGTTGGTGCAATTGTGTTCCTT
TTCTTGAGTACCGGCACCCTGAAAAAAGCGACGAGTCGTCCTACGACCCT
TTGAGGGCGTCCTTGGGCGTCTTCCGTTCAACGCTTTCATATCAGTAGTG
TTTTTTTGCCGTATGACCATAGACTTGTGAGAACTTGTGCTTCCGATATG
TTTTTCTTCATTACCATCCCAACATCAACTGCCGTGATCAACAACCTGGT
CGCTAGGTACTAGAGGAGGGCTCTTCTGCCACCGTCAAGCACGGGCTTGC
CATGGACCCTGCCTGCTTCGTCTCTGCCCTTCGTTCCTGCTGCCGGAACG
ACACCAATTCCGAAGATTCTGGCTCAGAGGCAGGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig18944:2..2886-

>mRNA_Ecto-sp13_S_contig18944.5998.1 ID=mRNA_Ecto-sp13_S_contig18944.5998.1|Name=mRNA_Ecto-sp13_S_contig18944.5998.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=861bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18944:2..2886- (Ectocarpus species13 EcNAP12_S_4_19m)
AAGGCTGACGCAGAGCTCGGACTTCGACTCCTGCGGGAGATCCACGTGTC
TACAGGGTACTCGCCTAACGCCTGGCACTACGGCGGGGTCTTCCTTTCTT
TCCTTAAGGCTGGGGATGAAACTGGGGCCCTCGCTATCCAATCGGAGTGG
AGAGATATCCAGGCATGCAACGCACGCGAAGCCATGGAGCGCATGCGTCC
GGGAGCCGAAAAAAGTGGCGGTGCAGATAGTGACGGCTCGGAACGTCGCT
CGCGAAACGGTCGCACCGATCCCAACAGCGATAAAAACGGCGCAAGGACC
GCGCAACGCGATGCAGCAATACAAGATCCAGAAGGACAGCGTGCGGTGGT
GGAACTGGCGGCTGCGGCCCCAGGAGATCGTTTCCAGCCTCTGGATTTGC
TTTGCTTGGCGGCGTTTCATGCGGATAATGGCGCATGGTCGGACTGTTTA
GATGTTCTCGGCACGGCGCAGGAGGTGAGCCGGACCGCCCGAGCGGCAGT
TAGGGCCAAAGCGAACGAGCTGCTTCTCGGCAGGACGGAACGAGGCGAGG
TGATCGGCAAAGTTGGGGCAGCGACCGGGCTTGCTGGTGCCGGGTTGGCT
TCCTGGCGAAAGGTCGCGGCAGAAAACTCCGAGGCTACGGAGCGGGCTGA
CGAGGCTTCAAAGGCGTTGAGGGGCTGCTACGAGTCCGCGGTGGAAGCGC
TTGGCCGCGCAGGGCGCCACAAGCAGGCCTTACAGGCAAAGGAGGGCTCT
TCTGCCACCGTCAAGCACGGGCTTGCCATGGACCCTGCCTGCTTCGTCTC
TGCCCTTCGTTCCTGCTGCCGGAACGACACCAATTCCGAAGATTCTGGCT
CAGAGGCAGGG
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