prot_Ecto-sp13_S_contig10643.595.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig10643.595.1
Unique Nameprot_Ecto-sp13_S_contig10643.595.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length179
Homology
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BLAST of mRNA_Ecto-sp13_S_contig10643.595.1 vs. uniprot
Match: D8LE74_ECTSI (Leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LE74_ECTSI)

HSP 1 Score: 85.5 bits (210), Expect = 4.240e-16
Identity = 50/76 (65.79%), Postives = 56/76 (73.68%), Query Frame = 0 
Query:   50 LKSLRLDSNDFSKA--TIVFRHTWQDLDKVTHSVSLCNLTVLSLKSCKLRRLDEDVAELRCLKELYLETNLILNLP 123
            LK L L +N   K   ++ F  + + L      VSLCNLTVLSLKSCKLRRLD+DVAELRCLKELYLETNLILNLP
Sbjct:  497 LKKLLLGNNQLKKLPYSVGFLTSLKTLQ-----VSLCNLTVLSLKSCKLRRLDDDVAELRCLKELYLETNLILNLP 567
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10643.595.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LE74_ECTSI4.240e-1665.79Leucine rich repeat protein n=1 Tax=Ectocarpus sil... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003591Leucine-rich repeat, typical subtypeSMARTSM00369LRR_typ_2coord: 106..128
e-value: 23.0
score: 10.3
coord: 152..175
e-value: 0.4
score: 19.8
coord: 83..105
e-value: 100.0
score: 5.1
IPR032675Leucine-rich repeat domain superfamilyGENE3D3.80.10.10coord: 11..179
e-value: 2.5E-24
score: 87.3
IPR001611Leucine-rich repeatPFAMPF13855LRR_8coord: 85..142
e-value: 1.3E-6
score: 28.0
NoneNo IPR availablePANTHERPTHR16083LEUCINE RICH REPEAT CONTAINING PROTEINcoord: 25..178
NoneNo IPR availableSUPERFAMILY52058L domain-likecoord: 51..179

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig10643contigEcto-sp13_S_contig10643:18..2000 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig10643.595.1mRNA_Ecto-sp13_S_contig10643.595.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig10643 18..2000 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig10643.595.1 ID=prot_Ecto-sp13_S_contig10643.595.1|Name=mRNA_Ecto-sp13_S_contig10643.595.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=179bp
EEKLELQPEFDRKLAKRIKMAGRSGELNFMMEGLTNFPMGVFQEETGRKL
KSLRLDSNDFSKATIVFRHTWQDLDKVTHSVSLCNLTVLSLKSCKLRRLD
EDVAELRCLKELYLETNLILNLPETFTRLRMLEILDAKKNRLQDCPEAIG
SLSLLKRLELDGNRLEVLPPSLSQLTQLE
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003591Leu-rich_rpt_typical-subtyp
IPR032675LRR_dom_sf
IPR001611Leu-rich_rpt