mRNA_Ecto-sp13_S_contig18850.5942.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig18850.5942.1
Unique NamemRNA_Ecto-sp13_S_contig18850.5942.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig18850.5942.1 vs. uniprot
Match: D7FX62_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FX62_ECTSI)

HSP 1 Score: 162 bits (411), Expect = 5.410e-49
Identity = 87/98 (88.78%), Postives = 91/98 (92.86%), Query Frame = 1 
Query:    1 MRGLLTLACAAAAVASANAFLVSTPCAPSSXXXXXXGRLACRRSMSMSKGFGEPPPPKKVKAPKSEKSIQRDAAAKAYEEMSAAGIPEYNILIKVSGT 294
            MRGLLTLACA+AAVASA+AFLVSTPCAPSS      GRLACRR+MSMSKGFGEPPPPKKVKAPKSEKSIQRDAAAKAYEEMSAAGIPEYNILIK +GT
Sbjct:    1 MRGLLTLACASAAVASASAFLVSTPCAPSSSSAAAAGRLACRRAMSMSKGFGEPPPPKKVKAPKSEKSIQRDAAAKAYEEMSAAGIPEYNILIKPAGT 98
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig18850.5942.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FX62_ECTSI5.410e-4988.78Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig18850contigEcto-sp13_S_contig18850:1371..3412 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score163.3
Seed ortholog evalue5.7e-38
Seed eggNOG ortholog2880.D7FX62
Model size294
Hectar predicted targeting categorychloroplast
Exons3
EggNOG OGs2E28I@1,2S9GR@2759
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-10_004420.1
Cds size294
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462963.055832-CDS-Ecto-sp13_S_contig18850:1370..15251681462963.055832-CDS-Ecto-sp13_S_contig18850:1370..1525Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18850 1371..1525 +
1681462963.0760312-CDS-Ecto-sp13_S_contig18850:1817..18721681462963.0760312-CDS-Ecto-sp13_S_contig18850:1817..1872Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18850 1818..1872 +
1681462963.0875864-CDS-Ecto-sp13_S_contig18850:3328..34121681462963.0875864-CDS-Ecto-sp13_S_contig18850:3328..3412Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18850 3329..3412 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig18850.5942.1prot_Ecto-sp13_S_contig18850.5942.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig18850 1371..3412 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig18850.5942.1

>prot_Ecto-sp13_S_contig18850.5942.1 ID=prot_Ecto-sp13_S_contig18850.5942.1|Name=mRNA_Ecto-sp13_S_contig18850.5942.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=98bp
MRGLLTLACAAAAVASANAFLVSTPCAPSSSSAAAAGRLACRRSMSMSKG
FGEPPPPKKVKAPKSEKSIQRDAAAKAYEEMSAAGIPEYNILIKVSGT
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mRNA from alignment at Ecto-sp13_S_contig18850:1371..3412+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig18850.5942.1 ID=mRNA_Ecto-sp13_S_contig18850.5942.1|Name=mRNA_Ecto-sp13_S_contig18850.5942.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2042bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18850:1371..3412+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCGAGGATTGCTTACTCTGGCGTGTGCTGCGGCGGCGGTAGCCTCGGC
GAACGCGTTCTTGGTGTCTACGCCGTGCGCTCCCTCCTCTTCCTCCGCTG
CTGCTGCTGGCCGATTAGCATGTCGTCGATCGATGAGCATGAGCAAAGGG
TTCGGGTGAGTCTTTGAGCAACAGCAGTGCGCACTAGGAGCCAGCGAGCA
GGGACGAGAAGGGAAGCGTGTCGCCGAGAGACAAGGTTGGATTGGACTTT
TTTCTGTAGTACCTCCCTCGAGGGTGCCAGCCAGCGACGTCAAGCTGTTT
TCGAGAAGTATATACGTATCTGTCGGTAGCTGCTCGCGGGCAAAGGCTGG
AATACGTCATCGGTGGGTGTACCTGTTCACAGCCGCTGTGTTGTGTGTGA
GTCCTTCGTCGCTCATCAGCTGGTGCTCTCGCTTGCAATGACGACAGGGA
GCCTCCCCCGCCGAAGAAGGTCAAGGCGCCCAAGTCAGAGAAGAGCATTC
AGGTGATGCAAAAAAGTGTTCCCTGTTGCCCGGTTCTCGTCGGCGACGAT
TTCAAGATTTCTGCTATTATAATGCGACTCAACGCACACGTACTTGAACC
AGCTGACTCGACTGCTGTCACACCACATTTGTCTCGTGGGCTCCTATATA
GGTTTTTGAGGTGCATGTGCATACGGCTTAGTAGACGTGACCCGCTTTGT
GTGCGTGTTCCATGTAGTTGTCATTCCCGATCCTCCTCACACCTCTTCCT
TCGTGGCAAGAGAGATATACGCAGCGGGCGGCGTTGATCGATCAAGTAAA
TGGAATTTTACAATCCATTTCTGCCCTGCTCAGCCTACTGCTGTAATGGT
AAAAATGGTGTGGCTACCAAATGCAGCAGCAGGTTACCCATCACGGCCTT
GATGCTCCAAACCTCCGAAAATAGCCCATTGCCACCCCCCCACCGATCGA
CGACATTGGATGCTGCGTTCCCGCTAGGAGCTCCTCCGAAAGACATTCAT
AAACTCTGTACATGACAGAGTTGCGACATAACTCCCAGGAGTAGATAACA
GCGTCGTGGAGCTATACACGCCATTTTGACCAGCAACGCTACACGAGAAA
AACGAGGCTTGCTTACAAACACGTGTCCGCGAGGGGAACAAACGGGAAGA
GCGTGGTAAGACGGGTGGAGACGGCGGGCTGTGGAGCGGCGAGGCTGGCC
TGCTTTCTTCCTTCTGGGTCTCACGTCCTGAACCGGGGTGTCTAATAAGC
CGAAATCAAACCGTCAGACTAGTCAGCCGCTAACTAGCGGATGACTAGCC
CGATGTTCAGCTTCTAAAGGTGGCATTGTAAGATCAACCACGCAGAGGCT
ACGGCAGGAGGAGCAGGGCGTTGCGTCATACCACGTATACTCGCGTTTGG
TATGTGTCTTCAAGCTCGAAGCTCCAAGGGACAACGAATCGCCGGAGGCA
AATCTGGCGACGACTTCGGGCGGGTGGCAGACGTAGAGAGGGAGGCGGGC
ACCGACCAGGCCACGGTCCCGCCGGTGACAAGGCTGAACTTGGGCGGCCA
AAGTAGTGGGAGTTCCTCTTGGTATGTGTTTCAGTCCTGTCATTGGAGCC
TCGGGAGAGAGGTGCAGCGCTGCGGCCGGGGGTCCTGAGTCTGCTTCCAA
CGCGTGGGAGAAGCATTTACTTCGGATGGTGGTGCGACGGTGGCCGTCTT
GCCGCGGCGGCGGCGGCGGTGGCGGCGGTGGTACTGTTGCGACCCGGGGT
CCCCCTTGCTCTCGTTATGCTGGTCTTCGTCGTATCTCATTCGGCGACGA
TGGGTTCGTGTCACAGGTTTCACTGACTTGTCTCTGGCAGGCGTTTTCGA
CTTCGGTGTTGATTTTGTTGGTATTTTTGTCAAAGCTTCTGTCCTCCCTC
GTCTCTCTCTTTCTCTTCCTTTGCCTCATACCCACCCAATCGACTTGCGC
CTCTGAAGAGAGACGCCGCCGCGAAAGCTTATGAGGAGATGTCGGCGGCC
GGTATTCCCGAGTACAACATCCTCATCAAGGTAAGCGGAACA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig18850:1371..3412+

>mRNA_Ecto-sp13_S_contig18850.5942.1 ID=mRNA_Ecto-sp13_S_contig18850.5942.1|Name=mRNA_Ecto-sp13_S_contig18850.5942.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=294bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18850:1371..3412+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCGAGGATTGCTTACTCTGGCGTGTGCTGCGGCGGCGGTAGCCTCGGC
GAACGCGTTCTTGGTGTCTACGCCGTGCGCTCCCTCCTCTTCCTCCGCTG
CTGCTGCTGGCCGATTAGCATGTCGTCGATCGATGAGCATGAGCAAAGGG
TTCGGGGAGCCTCCCCCGCCGAAGAAGGTCAAGGCGCCCAAGTCAGAGAA
GAGCATTCAGAGAGACGCCGCCGCGAAAGCTTATGAGGAGATGTCGGCGG
CCGGTATTCCCGAGTACAACATCCTCATCAAGGTAAGCGGAACA
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