mRNA_Ecto-sp13_S_contig18804.5927.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig18804.5927.1
Unique NamemRNA_Ecto-sp13_S_contig18804.5927.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig18804.5927.1 vs. uniprot
Match: D7G3S2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3S2_ECTSI)

HSP 1 Score: 340 bits (871), Expect = 1.770e-110
Identity = 170/178 (95.51%), Postives = 171/178 (96.07%), Query Frame = 1 
Query:    1 MHDIRETWAKINQPHVVAAEAGYNARRTILGAIAGEKVKYKTAKEFLGGTLSRKAFNEAKERRLTALEDGDVSALAGKRKERSDNLQEKYPMACGRVEQSILERTQPSPNLTKTNHDYRQRGDHIRSDADNSLVCVHPEKCETHGVHYMTGTQQHLYHQCMDDLQAAFSAGRAEIASI 534
            MH IRETWAKINQPHVVAAEAGYNARRTILGAIAGEKVKYK A EFLGGTLSRK+FNEAKERRLTALEDGDVSALAGKRK RSDNLQEKYPMAC RVEQSILERTQPSPNLTKTNHDYRQRGDHIRSDADNSLVCVHPEKCETH VHYMTGTQQHLYHQCMDDLQ AFSAGRAEIASI
Sbjct:    1 MHAIRETWAKINQPHVVAAEAGYNARRTILGAIAGEKVKYKHANEFLGGTLSRKSFNEAKERRLTALEDGDVSALAGKRKMRSDNLQEKYPMACCRVEQSILERTQPSPNLTKTNHDYRQRGDHIRSDADNSLVCVHPEKCETHRVHYMTGTQQHLYHQCMDDLQVAFSAGRAEIASI 178
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BLAST of mRNA_Ecto-sp13_S_contig18804.5927.1 vs. uniprot
Match: A0A6H5JLV8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLV8_9PHAE)

HSP 1 Score: 245 bits (626), Expect = 5.850e-80
Identity = 124/164 (75.61%), Postives = 134/164 (81.71%), Query Frame = 1 
Query:   10 IRETWAKINQPHVVAAEAGYNARRTILGAIAGEKVKYKTAKEFLGGTLSRKAFNEAKERRLTALEDGDVSALAGKRKERSDNLQEKYPMACGRVEQSILERTQPSPNLTKTNHDYRQRGDHIRSDADNSLVCVHPEKCETHGVHYMTGTQQHLYHQCMDDLQAA 501
            I E WA +NQPHVVA   GY ARR ILGAIA   VKY TA EF+GG+LSR AFNEAK  R TAL DGD+S L+G  KERSDNLQ+K PMACGR EQS  E TQP PNLTKTNHDYRQRGDHIRSDADNSLVCVHPEKCETH V+Y+TGT+ HL+ QCMDDLQAA
Sbjct:   52 ITEIWANVNQPHVVATLPGYKARRAILGAIASNHVKYSTACEFVGGSLSRAAFNEAKAPRETALADGDMSKLSGTSKERSDNLQKKSPMACGR-EQSFAEHTQPFPNLTKTNHDYRQRGDHIRSDADNSLVCVHPEKCETHPVYYITGTRDHLFRQCMDDLQAA 214
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BLAST of mRNA_Ecto-sp13_S_contig18804.5927.1 vs. uniprot
Match: A0A6H5K4U5_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4U5_9PHAE)

HSP 1 Score: 218 bits (554), Expect = 2.590e-62
Identity = 111/137 (81.02%), Postives = 117/137 (85.40%), Query Frame = 1 
Query:   10 IRETWAKINQPHVVAAEAGYNARRTILGAIAGEKVKYKTAKEFLGGTLSRKAFNEAKERRLTALEDGDVSALAGKRKERSDNLQEKYPMACGRVEQSILERTQPSPNLTKTNHDYRQRGDHIRSDADNSLVCVHPEK 420
            IRE W+ INQPHVVA   GYNARRTILGAIA   VKY TA EF+GG+LSR  FNEAK RR TAL  GD+S L+GKRKERSDNLQEKYPMAC RVEQSI ERTQPSPNLTKTNHDYR+RGDHIRSDADNSLVCVH EK
Sbjct:  108 IREIWSNINQPHVVATLPGYNARRTILGAIASIDVKYSTACEFVGGSLSRATFNEAKARRETALAAGDMSKLSGKRKERSDNLQEKYPMACSRVEQSIAERTQPSPNLTKTNHDYRRRGDHIRSDADNSLVCVHREK 244
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BLAST of mRNA_Ecto-sp13_S_contig18804.5927.1 vs. uniprot
Match: D7FWS2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWS2_ECTSI)

HSP 1 Score: 200 bits (509), Expect = 6.220e-57
Identity = 98/175 (56.00%), Postives = 127/175 (72.57%), Query Frame = 1 
Query:   10 IRETWAKINQPHVVAAEAGYNARRTILGAIAGEKVKYKTAKEFLGGTLSRKAFNEAKERRLTALEDGDVSALAGKRKERSDNLQEKYPMACGRVEQSILERTQPSPNLTKTNHDYRQRGDHIRSDADNSLVCVHPEKCETHGVHYMTGTQQHLYHQCMDDLQAAFSAGRAEIASI 534
            +R+ W+ ++   VVA+  GY+ RRT++G I   +V ++ AK FLGGTL  K + +A+ERR  AL++ D   +AGKRK+RSDNL++ YP A  RV +SI ERTQPSP  TKT HD R +G+HIRSDADNSLVCV PE C+THG+ YM GTQ  LY+ CM+DLQAAF  G  E+ SI
Sbjct:  134 VRDVWSIVSGSSVVASAGGYSLRRTMVGIIGSPRVSFEAAKSFLGGTLKEKTYKKARERREEALKNNDFGKMAGKRKQRSDNLEDLYPFAMARVRESIEERTQPSPCETKTKHD-RAKGNHIRSDADNSLVCVRPELCQTHGISYMMGTQLQLYNSCMEDLQAAFEQGHVEVGSI 307
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BLAST of mRNA_Ecto-sp13_S_contig18804.5927.1 vs. uniprot
Match: D7FXZ3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXZ3_ECTSI)

HSP 1 Score: 144 bits (364), Expect = 8.910e-37
Identity = 78/176 (44.32%), Postives = 105/176 (59.66%), Query Frame = 1 
Query:    7 DIRETWAKINQPHVVAAEAGYNARRTILGAIAGEKVKYKTAKEFLGGTLSRKAFNEAKERRLTALEDGDVSALAGKRKERSDNLQEKYPMACGRVEQSILERTQPSPNLTKTNHDYRQRGDHIRSDADNSLVCVHPEKCETHGVHYMTGTQQHLYHQCMDDLQAAFSAGRAEIASI 534
            +IR  W +++    VA+  G+  RR +LGA+ G    YK   EF+GG+LS +AFNEA+ RR        +  L   RK RSD L+   P A   + + I+  TQPSP L KT HDY   G+H RS+ADNSLVCV+P +C+T  V Y+ GT+  LY   M DL  AF+A + E+ SI
Sbjct:  145 NIRALWKRLSSSETVASSEGWQFRRVLLGALCGPNTTYKEVHEFVGGSLSHRAFNEAQIRRDATDTTSILHDLISDRKLRSDRLEVSCPKALAWIVERIIFHTQPSPCLVKTEHDY-DTGNHRRSEADNSLVCVYPARCKTESVRYLMGTKLQLYQTVMKDLDQAFAAEKVEVPSI 319
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig18804.5927.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7G3S2_ECTSI1.770e-11095.51Uncharacterized protein n=2 Tax=Ectocarpus silicul... [more]
A0A6H5JLV8_9PHAE5.850e-8075.61Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K4U5_9PHAE2.590e-6281.02Integrase catalytic domain-containing protein n=1 ... [more]
D7FWS2_ECTSI6.220e-5756.00Uncharacterized protein n=2 Tax=Ectocarpus silicul... [more]
D7FXZ3_ECTSI8.910e-3744.32Uncharacterized protein n=2 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig18804contigEcto-sp13_S_contig18804:319..1426 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size535
Hectar predicted targeting categoryother localisation
Exons3
Cds size534
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462962.174706-CDS-Ecto-sp13_S_contig18804:318..3511681462962.174706-CDS-Ecto-sp13_S_contig18804:318..351Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18804 319..351 -
1681462962.187673-CDS-Ecto-sp13_S_contig18804:614..8911681462962.187673-CDS-Ecto-sp13_S_contig18804:614..891Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18804 615..891 -
1681462962.1976874-CDS-Ecto-sp13_S_contig18804:1202..14261681462962.1976874-CDS-Ecto-sp13_S_contig18804:1202..1426Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18804 1203..1426 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig18804.5927.1prot_Ecto-sp13_S_contig18804.5927.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig18804 319..1426 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig18804.5927.1

>prot_Ecto-sp13_S_contig18804.5927.1 ID=prot_Ecto-sp13_S_contig18804.5927.1|Name=mRNA_Ecto-sp13_S_contig18804.5927.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=178bp
MHDIRETWAKINQPHVVAAEAGYNARRTILGAIAGEKVKYKTAKEFLGGT
LSRKAFNEAKERRLTALEDGDVSALAGKRKERSDNLQEKYPMACGRVEQS
ILERTQPSPNLTKTNHDYRQRGDHIRSDADNSLVCVHPEKCETHGVHYMT
GTQQHLYHQCMDDLQAAFSAGRAEIASI
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mRNA from alignment at Ecto-sp13_S_contig18804:319..1426-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig18804.5927.1 ID=mRNA_Ecto-sp13_S_contig18804.5927.1|Name=mRNA_Ecto-sp13_S_contig18804.5927.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1108bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18804:319..1426- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCACGACATCAGGGAAACCTGGGCGAAAATCAATCAGCCCCACGTCGT
AGCGGCCGAGGCCGGGTATAATGCGCGACGGACCATCCTCGGTGCGATCG
CCGGCGAGAAGGTGAAGTACAAGACCGCCAAGGAATTCCTAGGAGGTACT
CTGAGCCGGAAAGCCTTCAACGAGGCAAAGGAACGGAGATTGACGGCTCT
CGAAGACGGCGACGTGTCGGCATTGTAAGTACGTCAAGTACGTCAAGTAC
GTCAAGCTTGTGTCTTGTGTGACAGCCAGGGTGCTGTTTGTTTTCGTCAG
TGCGTGGCGGTGGATCTGCCGCAGCCGACAGGAAATCGAGCAGGACACAT
CGGTTGTGCGTCCTCGTCGTGCCTCTACCGTCTGTCGACGCTAGGTTATG
AAATAGCATGACAGCGACCCAAGGTAGCTGGTCGGCCGAGGACCTGAATA
CGCTGCAAAACACTCACTTGTTCGGCTGGGGGTAACAATTGCGAACCATT
CACGCATGCCACGTTTCTGTACCTTATCCATGCAGGGCAGGGAAGAGAAA
AGAGAGGTCCGATAACTTGCAGGAGAAGTACCCAATGGCATGCGGTCGGG
TGGAGCAGAGTATTCTCGAGCGCACCCAGCCTTCTCCAAACCTTACGAAG
ACGAATCACGACTACCGGCAGCGTGGGGATCACATTCGGTCTGACGCGGA
CAACTCTTTGGTCTGCGTCCACCCGGAGAAGTGTGAAACTCACGGAGTAC
ACTACATGACTGGGACCCAGCAGCACCTGTATCACCAGTGCATGGATGAC
CTACAAGCGGCTGTGAGTGCCATACTCGCTATGCACGTACAGCAAAGTAG
TTGTCTGTGTAATCGGTTGGTATGTGCCGTTTGGTTGACATACGATACCA
GTATATGATGAAGAGAACTTCAGGAGTCTCCATTGGCGTCACCTCTCAGT
CTGCACGTATCCGGCTACATGAGGTCTTCACCAGGCAATACACTACGATA
GTCGACAACAGCCCAGAAGTAACTGACGCCCCACCGTGTCCGTCCTGCAT
ACGTTCGGCGCCGCGCGTATCGCAGTTTAGTGCCGGGAGAGCTGAAATCG
CCTCTATT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig18804:319..1426-

>mRNA_Ecto-sp13_S_contig18804.5927.1 ID=mRNA_Ecto-sp13_S_contig18804.5927.1|Name=mRNA_Ecto-sp13_S_contig18804.5927.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=534bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18804:319..1426- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCACGACATCAGGGAAACCTGGGCGAAAATCAATCAGCCCCACGTCGT
AGCGGCCGAGGCCGGGTATAATGCGCGACGGACCATCCTCGGTGCGATCG
CCGGCGAGAAGGTGAAGTACAAGACCGCCAAGGAATTCCTAGGAGGTACT
CTGAGCCGGAAAGCCTTCAACGAGGCAAAGGAACGGAGATTGACGGCTCT
CGAAGACGGCGACGTGTCGGCATTGGCAGGGAAGAGAAAAGAGAGGTCCG
ATAACTTGCAGGAGAAGTACCCAATGGCATGCGGTCGGGTGGAGCAGAGT
ATTCTCGAGCGCACCCAGCCTTCTCCAAACCTTACGAAGACGAATCACGA
CTACCGGCAGCGTGGGGATCACATTCGGTCTGACGCGGACAACTCTTTGG
TCTGCGTCCACCCGGAGAAGTGTGAAACTCACGGAGTACACTACATGACT
GGGACCCAGCAGCACCTGTATCACCAGTGCATGGATGACCTACAAGCGGC
TTTTAGTGCCGGGAGAGCTGAAATCGCCTCTATT
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