prot_Ecto-sp13_S_contig10039.59.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig10039.59.1
Unique Nameprot_Ecto-sp13_S_contig10039.59.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length167
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig10039.59.1 vs. uniprot
Match: D7G5E4_ECTSI (Similar to arginine/serine-rich splicing factor 7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5E4_ECTSI)

HSP 1 Score: 195 bits (495), Expect = 7.580e-60
Identity = 88/89 (98.88%), Postives = 89/89 (100.00%), Query Frame = 0 
Query:    1 MGDVPGTKVWVGNLGSTCEERDLRDEFSKFGELNKVWVARNPPGFAFVWFADDRDAGDAVKEIDGKSIAGREWRVEVSHQRGRDRGPPG 89
            MGDVPGTKVWVGNLGSTCEERDLRDEFSKFGELNKVWVARNPPGFAFVWFADDRDAGDAV+EIDGKSIAGREWRVEVSHQRGRDRGPPG
Sbjct:    1 MGDVPGTKVWVGNLGSTCEERDLRDEFSKFGELNKVWVARNPPGFAFVWFADDRDAGDAVREIDGKSIAGREWRVEVSHQRGRDRGPPG 89
[Close]
BLAST of mRNA_Ecto-sp13_S_contig10039.59.1 vs. uniprot
Match: A0A6H5L109_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L109_9PHAE)

HSP 1 Score: 170 bits (430), Expect = 4.180e-50
Identity = 85/131 (64.89%), Postives = 88/131 (67.18%), Query Frame = 0 
Query:    1 MGDVPGTKVWVGNLGSTCEERDLRDEFSKFGELNKVWVARNPPGFAFVWFADDRDAGDAVKEIDGKSIAGREWRVE------------------------------------------VSHQRGRDRGPPG 89
            MGDVPGTKVWVGNLGSTCEERDLRDEFSKFGELNKVWVARNPPGFAFVWFADDRDA DAV+E+DG+SIAGREWRVE                                          VSHQRGRDRGPPG
Sbjct:    1 MGDVPGTKVWVGNLGSTCEERDLRDEFSKFGELNKVWVARNPPGFAFVWFADDRDATDAVREVDGRSIAGREWRVEIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVSHQRGRDRGPPG 131
[Close]
BLAST of mRNA_Ecto-sp13_S_contig10039.59.1 vs. uniprot
Match: A0A0L0FQL3_9EUKA (Uncharacterized protein n=2 Tax=Sphaeroforma arctica JP610 TaxID=667725 RepID=A0A0L0FQL3_9EUKA)

HSP 1 Score: 112 bits (281), Expect = 3.040e-28
Identity = 52/89 (58.43%), Postives = 62/89 (69.66%), Query Frame = 0 
Query:    1 MGDVPGTKVWVGNLGSTCEERDLRDEFSKFGELNKVWVARNPPGFAFVWFADDRDAGDAVKEIDGKSIAGREWRVEVSHQRG--RDRGP 87
            MGD  GTKV+VGNL     ERDLRD F  FG +N +W+ARNPPGF F+WF D RDA DAVKE+  +   G+  RVE+S+ RG  R RGP
Sbjct:    1 MGDSKGTKVYVGNLEHDASERDLRDMFETFGSVNDIWIARNPPGFGFIWFEDSRDADDAVKELHDREHNGKLLRVEISNSRGGGRGRGP 89
[Close]
BLAST of mRNA_Ecto-sp13_S_contig10039.59.1 vs. uniprot
Match: A0A2P2I2I1_9CRUS (Serine/arginine-rich splicing factor 7-like n=1 Tax=Hirondellea gigas TaxID=1518452 RepID=A0A2P2I2I1_9CRUS)

HSP 1 Score: 106 bits (265), Expect = 7.200e-26
Identity = 50/82 (60.98%), Postives = 59/82 (71.95%), Query Frame = 0 
Query:    4 VPGTKVWVGNLGSTCEERDLRDEFSKFGELNKVWVARNPPGFAFVWFADDRDAGDAVKEIDGKSIAGREWRVEVSHQRGRDR 85
            + G KV+VG+LGST   +DL D FS +G L  VWVARNPPGFAFV F D RDA DAV+ +DG+SI GR  RVE+S  R R R
Sbjct:    1 MDGNKVYVGDLGSTASRQDLEDAFSYYGRLTNVWVARNPPGFAFVEFEDPRDADDAVRALDGRSICGRRVRVELSTGRSRSR 82
[Close]
BLAST of mRNA_Ecto-sp13_S_contig10039.59.1 vs. uniprot
Match: A0A6A0H9J0_HYAAZ (Uncharacterized protein n=2 Tax=Amphipoda TaxID=6821 RepID=A0A6A0H9J0_HYAAZ)

HSP 1 Score: 105 bits (261), Expect = 8.230e-26
Identity = 51/83 (61.45%), Postives = 60/83 (72.29%), Query Frame = 0 
Query:    8 KVWVGNLGSTCEERDLRDEFSKFGELNKVWVARNPPGFAFVWFADDRDAGDAVKEIDGKSIAGREWRVEVSHQRGRDR--GPP 88
            KV+VG+LGST   +DL D FS +G L  VWVARNPPGFAFV F D RDA DAV+ +DG++I GR  RVE+S  R R R  GPP
Sbjct:    8 KVYVGDLGSTASRQDLEDAFSYYGRLTNVWVARNPPGFAFVEFEDPRDADDAVRALDGRTICGRRVRVEMSTGRSRSRYDGPP 90
[Close]
BLAST of mRNA_Ecto-sp13_S_contig10039.59.1 vs. uniprot
Match: A0A7S3D6C5_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Palpitomonas bilix TaxID=652834 RepID=A0A7S3D6C5_9EUKA)

HSP 1 Score: 104 bits (260), Expect = 9.580e-26
Identity = 49/84 (58.33%), Postives = 61/84 (72.62%), Query Frame = 0 
Query:    1 MGDV-PGTKVWVGNLGSTCEERDLRDEFSKFGELNKVWVARNPPGFAFVWFADDRDAGDAVKEIDGKSIAGREWRVEVSHQRGR 83
            MGD   GTKV+VG+L  + +++DL+D F  FG +N VW+AR PPGFAFVWF D RDA DAV E+ GK I GR+ +VEVS   GR
Sbjct:   28 MGDYNKGTKVYVGDLDPSADDKDLKDFFRDFGRINDVWIARKPPGFAFVWFDDKRDAEDAVYELSGKEIRGRKVKVEVSRGGGR 111
[Close]
BLAST of mRNA_Ecto-sp13_S_contig10039.59.1 vs. uniprot
Match: A0A8B7PAN8_HYAAZ (serine/arginine-rich splicing factor 7-like n=1 Tax=Hyalella azteca TaxID=294128 RepID=A0A8B7PAN8_HYAAZ)

HSP 1 Score: 105 bits (261), Expect = 3.840e-25
Identity = 51/83 (61.45%), Postives = 60/83 (72.29%), Query Frame = 0 
Query:    8 KVWVGNLGSTCEERDLRDEFSKFGELNKVWVARNPPGFAFVWFADDRDAGDAVKEIDGKSIAGREWRVEVSHQRGRDR--GPP 88
            KV+VG+LGST   +DL D FS +G L  VWVARNPPGFAFV F D RDA DAV+ +DG++I GR  RVE+S  R R R  GPP
Sbjct:    8 KVYVGDLGSTASRQDLEDAFSYYGRLTNVWVARNPPGFAFVEFEDPRDADDAVRALDGRTICGRRVRVEMSTGRSRSRYDGPP 90
[Close]
BLAST of mRNA_Ecto-sp13_S_contig10039.59.1 vs. uniprot
Match: UPI0010FC6CEE (serine/arginine-rich splicing factor 3-like isoform X2 n=3 Tax=Acropora TaxID=6127 RepID=UPI0010FC6CEE)

HSP 1 Score: 102 bits (253), Expect = 6.550e-25
Identity = 49/82 (59.76%), Postives = 57/82 (69.51%), Query Frame = 0 
Query:    8 KVWVGNLGSTCEERDLRDEFSKFGELNKVWVARNPPGFAFVWFADDRDAGDAVKEIDGKSIAGREWRVEVSHQRGRDRGPPG 89
            KV+VGNLG    + ++  EF KFG L+ VWVARNPPGFAFV F D RDA DA+KE+DGK I G   RVE+S  RGR  G  G
Sbjct:   10 KVYVGNLGDNGRKEEIEREFEKFGRLHDVWVARNPPGFAFVEFEDLRDAEDAIKELDGKHICGARVRVEMSRHRGRGGGRGG 91
[Close]
BLAST of mRNA_Ecto-sp13_S_contig10039.59.1 vs. uniprot
Match: A0A7S0QEZ0_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0QEZ0_9CRYP)

HSP 1 Score: 101 bits (251), Expect = 1.890e-24
Identity = 45/80 (56.25%), Postives = 58/80 (72.50%), Query Frame = 0 
Query:    3 DVPGTKVWVGNLGSTCEERDLRDEFSKFGELNKVWVARNPPGFAFVWFADDRDAGDAVKEIDGKSIAGREWRVEVSHQRG 82
            D  GTKV+VGNL    E RDLR+ F  FGE++ VWVAR PPGF FVWF ++RDA DAV+++D + I G   RV++S+ RG
Sbjct:   11 DHKGTKVFVGNLPPEAESRDLREFFKDFGEISDVWVARKPPGFGFVWFENERDARDAVRDMDRRDILGNRVRVDLSNSRG 90
[Close]
BLAST of mRNA_Ecto-sp13_S_contig10039.59.1 vs. uniprot
Match: J9JRS0_ACYPI (Uncharacterized protein n=1 Tax=Acyrthosiphon pisum TaxID=7029 RepID=J9JRS0_ACYPI)

HSP 1 Score: 101 bits (251), Expect = 2.110e-24
Identity = 48/87 (55.17%), Postives = 63/87 (72.41%), Query Frame = 0 
Query:    5 PGTKVWVGNLGSTCEERDLRDEFSKFGELNKVWVARNPPGFAFVWFADDRDAGDAVKEIDGKSIAGREWRVEVSH---QRGRDRGPP 88
            P  K++VG+LGS+  ++DL D FS +G +  VWVARNPPGFAFV F D RDA DAV+ +DG+SI GR  RVE+S+   ++G  RG P
Sbjct:   13 PDCKIYVGDLGSSASKQDLEDAFSYYGSIRNVWVARNPPGFAFVEFEDPRDAEDAVRGLDGRSICGRRVRVELSNAGSRKGAYRGGP 99
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10039.59.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G5E4_ECTSI7.580e-6098.88Similar to arginine/serine-rich splicing factor 7 ... [more]
A0A6H5L109_9PHAE4.180e-5064.89Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A0L0FQL3_9EUKA3.040e-2858.43Uncharacterized protein n=2 Tax=Sphaeroforma arcti... [more]
A0A2P2I2I1_9CRUS7.200e-2660.98Serine/arginine-rich splicing factor 7-like n=1 Ta... [more]
A0A6A0H9J0_HYAAZ8.230e-2661.45Uncharacterized protein n=2 Tax=Amphipoda TaxID=68... [more]
A0A7S3D6C5_9EUKA9.580e-2658.33Hypothetical protein (Fragment) n=1 Tax=Palpitomon... [more]
A0A8B7PAN8_HYAAZ3.840e-2561.45serine/arginine-rich splicing factor 7-like n=1 Ta... [more]
UPI0010FC6CEE6.550e-2559.76serine/arginine-rich splicing factor 3-like isofor... [more]
A0A7S0QEZ0_9CRYP1.890e-2456.25Hypothetical protein (Fragment) n=1 Tax=Cryptomona... [more]
J9JRS0_ACYPI2.110e-2455.17Uncharacterized protein n=1 Tax=Acyrthosiphon pisu... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 8..76
e-value: 3.6E-19
score: 79.7
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 9..74
e-value: 1.7E-16
score: 59.8
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 7..80
score: 16.551
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 2..113
e-value: 5.1E-24
score: 86.8
NoneNo IPR availablePANTHERPTHR23147SERINE/ARGININE RICH SPLICING FACTORcoord: 7..86
NoneNo IPR availablePANTHERPTHR23147:SF18SERINE/ARGININE-RICH SPLICING FACTOR 7coord: 7..86
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 4..111

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig10039contigEcto-sp13_S_contig10039:890..2683 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig10039.59.1mRNA_Ecto-sp13_S_contig10039.59.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig10039 890..4829 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig10039.59.1 ID=prot_Ecto-sp13_S_contig10039.59.1|Name=mRNA_Ecto-sp13_S_contig10039.59.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=167bp
MGDVPGTKVWVGNLGSTCEERDLRDEFSKFGELNKVWVARNPPGFAFVWF
ADDRDAGDAVKEIDGKSIAGREWRVEVSHQRGRDRGPPGGGYGGGGGGGG
YGGGGGGGGGGYGPAADTAAVAAAVATGGAAAAAAGTALLASAAPRPALA
TRSASPACPRACAGQS*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000504RRM_dom
IPR012677Nucleotide-bd_a/b_plait_sf
IPR035979RBD_domain_sf