mRNA_Ecto-sp13_S_contig1873.5896.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1873.5896.1
Unique NamemRNA_Ecto-sp13_S_contig1873.5896.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1873.5896.1 vs. uniprot
Match: A0A6H5KGX1_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KGX1_9PHAE)

HSP 1 Score: 143 bits (360), Expect = 6.330e-41
Identity = 68/68 (100.00%), Postives = 68/68 (100.00%), Query Frame = 1 
Query:    1 PLKGGAKIAPGRLYVKVDHRRDDELGPTLKSGTVGVKIVERVRVDPLGMAEADITNVVPCGSVQFRPV 204
            PLKGGAKIAPGRLYVKVDHRRDDELGPTLKSGTVGVKIVERVRVDPLGMAEADITNVVPCGSVQFRPV
Sbjct:  201 PLKGGAKIAPGRLYVKVDHRRDDELGPTLKSGTVGVKIVERVRVDPLGMAEADITNVVPCGSVQFRPV 268
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1873.5896.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KGX1_9PHAE6.330e-41100.00Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1873contigEcto-sp13_S_contig1873:14412..15357 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score144.1
Seed ortholog evalue2.5e-32
Seed eggNOG ortholog2880.D8LBK6
Model size207
Hectar predicted targeting categoryother localisation
Exons2
EggNOG OGs2E2US@1,2SA11@2759
Cds size207
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462959.754859-CDS-Ecto-sp13_S_contig1873:14411..144961681462959.754859-CDS-Ecto-sp13_S_contig1873:14411..14496Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1873 14412..14496 -
1681462959.7666378-CDS-Ecto-sp13_S_contig1873:15235..153571681462959.7666378-CDS-Ecto-sp13_S_contig1873:15235..15357Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1873 15236..15357 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1873.5896.1prot_Ecto-sp13_S_contig1873.5896.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1873 14412..15357 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1873.5896.1

>prot_Ecto-sp13_S_contig1873.5896.1 ID=prot_Ecto-sp13_S_contig1873.5896.1|Name=mRNA_Ecto-sp13_S_contig1873.5896.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=69bp
PLKGGAKIAPGRLYVKVDHRRDDELGPTLKSGTVGVKIVERVRVDPLGMA
EADITNVVPCGSVQFRPV*
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mRNA from alignment at Ecto-sp13_S_contig1873:14412..15357-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1873.5896.1 ID=mRNA_Ecto-sp13_S_contig1873.5896.1|Name=mRNA_Ecto-sp13_S_contig1873.5896.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=946bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1873:14412..15357- (Ectocarpus species13 EcNAP12_S_4_19m)
CCTCTCAAGGGGGGCGCCAAGATCGCGCCCGGCAGACTGTACGTGAAAGT
AGACCACAGGAGAGACGATGAGCTCGGGCCGACACTCAAGAGCGGGACAG
TTGGCGTGAAAATAGTGGAAAGGTGAGGGAATACTTTCAAGGACGCCGAC
CTTTGACCACGAAAAACCACCCCCCCATTGAGTCACCCGGTGCTTGTTTG
GCAAGAGACTCCCAAGGTTAGTCCAGGGATTCGCCTGTCTGTGCGCTCAT
GCAGGCGTTGTTTTTGGGTACTTGTGGCGCTGCACCAAGAAAGGCACATT
AATTGTCTGCGTAGCTACTCGAGCAGCAGGATCTTTGACGGATATTCTAT
ATAGCAGCGTGGCAACATCGAGCGTAAATGTTGTTGACAGAATAGACCCC
TCCGGAAGGAAGCTCGGTACACCTCTACCCTTCACCCCCAAGGGGCCAGA
AAATCTATACGGAAAGGGCATTTTGCAGAGTGCACCGCTTTTTGTACTGG
CTCTCTCAAAACACGTGCTAATTGCTTGACACCAAGGGGATGGGAGGTTT
GGTGTCCCTGGGGGTGTTGCAGTCTTGATGTCCGGGGCTTCGGGGACACA
CGAATACGTCTCCCCGGGAAAGAAAAGTAAATGCGGAGAACCAAGGGATG
TAGCATGCATGTCCCACGGAGACGTATGCAGCCGTAGTCCTCCCCTCGCT
GATCAATACATTTGTCTTTCCAGTACAGGGATGTTCCGTTATTCCCATCC
GGAAGGTCTCTCGTCGAAAAGAAACCACGCCCACGTATAACAAGCACCCC
AACCCCTTGTGCCGTCGTCACACGCCCCCCCCCCTCCCCCCTATTGGCGC
GATTTTTGCAGAGTTCGGGTGGACCCGCTTGGAATGGCGGAGGCAGATAT
TACTAACGTAGTACCCTGCGGTTCGGTACAATTCCGACCGGTTTAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1873:14412..15357-

>mRNA_Ecto-sp13_S_contig1873.5896.1 ID=mRNA_Ecto-sp13_S_contig1873.5896.1|Name=mRNA_Ecto-sp13_S_contig1873.5896.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=207bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1873:14412..15357- (Ectocarpus species13 EcNAP12_S_4_19m)
CCTCTCAAGGGGGGCGCCAAGATCGCGCCCGGCAGACTGTACGTGAAAGT
AGACCACAGGAGAGACGATGAGCTCGGGCCGACACTCAAGAGCGGGACAG
TTGGCGTGAAAATAGTGGAAAGAGTTCGGGTGGACCCGCTTGGAATGGCG
GAGGCAGATATTACTAACGTAGTACCCTGCGGTTCGGTACAATTCCGACC
GGTTTAG
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