mRNA_Ecto-sp13_S_contig18714.5892.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig18714.5892.1 vs. uniprot
Match: D8LHQ4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHQ4_ECTSI) HSP 1 Score: 360 bits (924), Expect = 2.750e-118 Identity = 193/207 (93.24%), Postives = 195/207 (94.20%), Query Frame = 1
Query: 1 SPAFVAPPSSSGSALTALRSTAPATTLTSRSRPAADGYSRAKGARQAWSAFGGVPDGGAATSAGEEERTRIAAEPKLQPEAASTVSGLATGAAVVALAALGGFPGLAAAEAPAWVGPTKLVLDPTLLYFEFAFVARIVLSWYPKLDLNSAPQNLVAWPTEPILRPTRAIIPPAFGVDISPIVWVMICSLVHEILLGQQGILNLMSNK 621
S AFVAPPSSSGSALTALR+ PATTLTSRSRPAA GY R KGARQAWSA GGVPDGGA S GEEERTR AAEPKLQP AASTVSGLATGAAVVALAALGGFPGLAAAEAPAWVGPTKLVLDPTLLYFEFAFVARIVLSWYPKLDLNSAPQNLVAWPTEPIL+PTRAIIPPAFGVDISPIVWVMICSLVHEILLGQQGILNLMSNK
Sbjct: 23 SSAFVAPPSSSGSALTALRTAPPATTLTSRSRPAAGGYGREKGARQAWSALGGVPDGGATASTGEEERTRSAAEPKLQPAAASTVSGLATGAAVVALAALGGFPGLAAAEAPAWVGPTKLVLDPTLLYFEFAFVARIVLSWYPKLDLNSAPQNLVAWPTEPILKPTRAIIPPAFGVDISPIVWVMICSLVHEILLGQQGILNLMSNK 229
BLAST of mRNA_Ecto-sp13_S_contig18714.5892.1 vs. uniprot
Match: A0A6H5L5E9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5E9_9PHAE) HSP 1 Score: 345 bits (884), Expect = 2.130e-112 Identity = 189/216 (87.50%), Postives = 193/216 (89.35%), Query Frame = 1
Query: 4 PAFVAPPSSSGSALTALRSTAPATTLTSRSRPAADGYSRAKGARQAWSAFGGVPDGGAATSAGEEERTRIAAEPKLQP----------EAASTVSGLATGAAVVALAALGGFPGLAAAEAPAWVGPTKLVLDPTLLYFEFAFVARIVLSWYPKLDLNSAPQNLVAWPTEPILRPTRAIIPPAFGVDISPIVWVMICSLVHEILLGQQGILNLMSNK 621
PAFVAPPSSSGSALTALR+ APATTLTSRSR AADGY AKGAR AWSA GGV DGGAATSAGEEERT IAAEPKLQP + + V GLATGA VVALAALGGFPGLAAAEAPAWVGPTKLVLDPTLL+FEFAFVARIVLSWYPKLDLNSAPQNLVAWPTEPILRPTRAIIPPAFGVDISPIVWVMICSLVHEILLGQQGILNLMSNK
Sbjct: 6 PAFVAPPSSSGSALTALRTAAPATTLTSRSRRAADGYGMAKGARHAWSALGGVSDGGAATSAGEEERTGIAAEPKLQPAVGEEMLKWNDRLNIVGGLATGATVVALAALGGFPGLAAAEAPAWVGPTKLVLDPTLLFFEFAFVARIVLSWYPKLDLNSAPQNLVAWPTEPILRPTRAIIPPAFGVDISPIVWVMICSLVHEILLGQQGILNLMSNK 221
BLAST of mRNA_Ecto-sp13_S_contig18714.5892.1 vs. uniprot
Match: A0A836CA21_9STRA (YGGT family-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CA21_9STRA) HSP 1 Score: 162 bits (411), Expect = 4.520e-43 Identity = 74/99 (74.75%), Postives = 84/99 (84.85%), Query Frame = 1
Query: 325 AEAPAWVGPTKLVLDPTLLYFEFAFVARIVLSWYPKLDLNSAPQNLVAWPTEPILRPTRAIIPPAFGVDISPIVWVMICSLVHEILLGQQGILNLMSNK 621
A+ P WVGPT+ LDP LLY EFAF+ RIVLSWYP+ DLN APQNLVAWPTEPIL+PTRA++PPAFGVDISPIVWVMI S V EIL GQQGI N++S +
Sbjct: 91 ADVPGWVGPTRAALDPFLLYMEFAFLCRIVLSWYPQTDLNKAPQNLVAWPTEPILKPTRAVVPPAFGVDISPIVWVMILSFVREILFGQQGIFNMLSQQ 189
BLAST of mRNA_Ecto-sp13_S_contig18714.5892.1 vs. uniprot
Match: A0A7S3UWL9_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UWL9_HETAK) HSP 1 Score: 140 bits (353), Expect = 5.070e-35 Identity = 66/102 (64.71%), Postives = 79/102 (77.45%), Query Frame = 1
Query: 310 PGLAAAEAPAWVGPTKLVLDPTLLYFEFAFVARIVLSWYPKLDLNSAPQNLVAWPTEPILRPTRAIIPPAFGVDISPIVWVMICSLVHEILLGQQGILNLMS 615
P +A+AE PAWV PT VL P L F A +ARIVLSWYP +DLN AP NLVAWPTEP+L TR ++PPAFGVDISPIVW+M+ S V+E+ LG QGIL L++
Sbjct: 73 PTVASAEVPAWVEPTSTVLGPFLAVFSLAMLARIVLSWYPSIDLNEAPFNLVAWPTEPLLAFTRGVVPPAFGVDISPIVWLMVASFVNEVALGPQGILTLLA 174
BLAST of mRNA_Ecto-sp13_S_contig18714.5892.1 vs. uniprot
Match: A0A7S2V560_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V560_9STRA) HSP 1 Score: 132 bits (332), Expect = 3.610e-32 Identity = 61/104 (58.65%), Postives = 77/104 (74.04%), Query Frame = 1
Query: 310 PGLAAAEAPAWVGPTKLVLDPTLLYFEFAFVARIVLSWYPKLDLNSAPQNLVAWPTEPILRPTRAIIPPAFGVDISPIVWVMICSLVHEILLGQQGILNLMSNK 621
P A A AP WV PTKL+LDP L A +AR+VLSWYP + L+ AP + + PTEP+L+ TR ++PPAFGVD+SPIVW+MI S HEILLGQQG+L ++ NK
Sbjct: 73 PESAFAAAPVWVAPTKLILDPLLNIVSLAMLARVVLSWYPSISLDKAPFSYLKAPTEPVLQVTREVVPPAFGVDVSPIVWIMISSFFHEILLGQQGLLTILQNK 176
BLAST of mRNA_Ecto-sp13_S_contig18714.5892.1 vs. uniprot
Match: A0A7S2GHS6_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2GHS6_9STRA) HSP 1 Score: 128 bits (322), Expect = 7.280e-31 Identity = 61/118 (51.69%), Postives = 81/118 (68.64%), Query Frame = 1
Query: 259 GLATGAAVVALAALGGFPGLAAAEAPAWVGPTKLVLDPTLLYFEFAFVARIVLSWYPKLDLNSAPQNLVAWPTEPILRPTRAIIPPAFGVDISPIVWVMICSLVHEILLGQQGILNLM 612
GL T AA+ ++ L P LA A AW GPT+ + DP LL + + R+++SWYP+++LN P N++ WPTEP LRPTR +IPPAFGVDISPIVW+ I S EI GQQG+ N++
Sbjct: 55 GLTTVAALSSVVLL--HPDLAIAYDNAWAGPTRAICDPLLLVGQTVMLFRVIISWYPEINLNKLPYNIITWPTEPFLRPTRKVIPPAFGVDISPIVWIAILSFFREIFFGQQGVFNML 170
BLAST of mRNA_Ecto-sp13_S_contig18714.5892.1 vs. uniprot
Match: A0A7S2PCB6_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2PCB6_9STRA) HSP 1 Score: 128 bits (321), Expect = 1.120e-30 Identity = 57/98 (58.16%), Postives = 73/98 (74.49%), Query Frame = 1
Query: 316 LAAAEAPAWVGPTKLVLDPTLLYFEFAFVARIVLSWYPKLDLNSAPQNLVAWPTEPILRPTRAIIPPAFGVDISPIVWVMICSLVHEILLGQQGILNL 609
L AE AWV P K VLDP+L FA + R+V+SWYP+ ++N P N+V WPTEP+LR TR ++PPAFGVDISPIVW+ + + +HEI LGQQG+L L
Sbjct: 71 LTVAETEAWVEPLKNVLDPSLNLLSFAMLCRVVISWYPETNVNEVPYNIVVWPTEPLLRVTRGVVPPAFGVDISPIVWLGVFTFLHEIFLGQQGLLTL 168
BLAST of mRNA_Ecto-sp13_S_contig18714.5892.1 vs. uniprot
Match: A0A7S1FZ37_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1FZ37_9STRA) HSP 1 Score: 125 bits (314), Expect = 8.920e-30 Identity = 57/95 (60.00%), Postives = 72/95 (75.79%), Query Frame = 1
Query: 325 AEAPAWVGPTKLVLDPTLLYFEFAFVARIVLSWYPKLDLNSAPQNLVAWPTEPILRPTRAIIPPAFGVDISPIVWVMICSLVHEILLGQQGILNL 609
AE WV P + VLDP L FA + RIV+SWYP +L++ P +L WPTEP+LRPTRA++PPAFGVDISP+VW+ I + +HEILLGQQG+L L
Sbjct: 69 AETDPWVVPLQSVLDPLLNLLSFAMLCRIVISWYPNTNLSTLPYSLAVWPTEPLLRPTRAVVPPAFGVDISPMVWLGIFTFLHEILLGQQGLLTL 163
BLAST of mRNA_Ecto-sp13_S_contig18714.5892.1 vs. uniprot
Match: A0A7S3W2L2_9SPIT (Hypothetical protein (Fragment) n=1 Tax=Strombidinopsis acuminata TaxID=141414 RepID=A0A7S3W2L2_9SPIT) HSP 1 Score: 122 bits (306), Expect = 1.400e-28 Identity = 56/94 (59.57%), Postives = 67/94 (71.28%), Query Frame = 1
Query: 340 WVGPTKLVLDPTLLYFEFAFVARIVLSWYPKLDLNSAPQNLVAWPTEPILRPTRAIIPPAFGVDISPIVWVMICSLVHEILLGQQGILNLMSNK 621
WVGPTKLVL P F F+ R +LSW+PK DLN+ P N+ AWPTEPIL+ TR +IPP GVDI+PIVWV I S EILLG QG+L ++ K
Sbjct: 80 WVGPTKLVLGPLFTIFTLLFLFRTILSWFPKYDLNAFPYNIAAWPTEPILKGTRKVIPPVAGVDITPIVWVAIISFFSEILLGPQGLLTIIQRK 173
BLAST of mRNA_Ecto-sp13_S_contig18714.5892.1 vs. uniprot
Match: A0A7S0EIA8_9EUKA (Hypothetical protein n=1 Tax=Phaeocystis antarctica TaxID=33657 RepID=A0A7S0EIA8_9EUKA) HSP 1 Score: 121 bits (304), Expect = 4.000e-28 Identity = 56/102 (54.90%), Postives = 72/102 (70.59%), Query Frame = 1
Query: 316 LAAAEAPAWVGPTKLVLDPTLLYFEFAFVARIVLSWYPKLDLNSAPQNLVAWPTEPILRPTRAIIPPAFGVDISPIVWVMICSLVHEILLGQQGILNLMSNK 621
L A+ AW+G TK V+ P L F F+ R+VLSW+PK DLN P N+ AWPTEPIL+PTR +IPP GVDISPIVWV S + EIL+G QG+L+++ +
Sbjct: 90 LVASSDTAWIGTTKAVVGPLLSIFTVLFLFRVVLSWFPKYDLNVLPWNIAAWPTEPILKPTRRLIPPVAGVDISPIVWVAFLSFLSEILIGPQGLLSILQKQ 191 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig18714.5892.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig18714.5892.1 >prot_Ecto-sp13_S_contig18714.5892.1 ID=prot_Ecto-sp13_S_contig18714.5892.1|Name=mRNA_Ecto-sp13_S_contig18714.5892.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=208bp SPAFVAPPSSSGSALTALRSTAPATTLTSRSRPAADGYSRAKGARQAWSAback to top mRNA from alignment at Ecto-sp13_S_contig18714:91..2844- Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig18714.5892.1 ID=mRNA_Ecto-sp13_S_contig18714.5892.1|Name=mRNA_Ecto-sp13_S_contig18714.5892.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2754bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18714:91..2844- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig18714:91..2844- >mRNA_Ecto-sp13_S_contig18714.5892.1 ID=mRNA_Ecto-sp13_S_contig18714.5892.1|Name=mRNA_Ecto-sp13_S_contig18714.5892.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=624bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18714:91..2844- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |