mRNA_Ecto-sp13_S_contig18644.5849.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig18644.5849.1
Unique NamemRNA_Ecto-sp13_S_contig18644.5849.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig18644.5849.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig18644contigEcto-sp13_S_contig18644:1573..2288 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size595
Hectar predicted targeting categorysignal peptide
Exons2
Cds size312
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462956.1046755-UTR-Ecto-sp13_S_contig18644:1572..17731681462956.1046755-UTR-Ecto-sp13_S_contig18644:1572..1773Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig18644 1573..1773 -
1681462956.1257832-UTR-Ecto-sp13_S_contig18644:2085..21381681462956.1257832-UTR-Ecto-sp13_S_contig18644:2085..2138Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig18644 2086..2138 -
1681462956.1358347-UTR-Ecto-sp13_S_contig18644:2259..22881681462956.1358347-UTR-Ecto-sp13_S_contig18644:2259..2288Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig18644 2260..2288 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462956.1157868-CDS-Ecto-sp13_S_contig18644:1773..20851681462956.1157868-CDS-Ecto-sp13_S_contig18644:1773..2085Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18644 1774..2085 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig18644.5849.1prot_Ecto-sp13_S_contig18644.5849.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig18644 1774..2085 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig18644.5849.1

>prot_Ecto-sp13_S_contig18644.5849.1 ID=prot_Ecto-sp13_S_contig18644.5849.1|Name=mRNA_Ecto-sp13_S_contig18644.5849.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=104bp
MKKTGKKLASANCVKRALALHIWLTLTAAACGLEQFLQSSLLMAMMTRQE
VFLASLFAKGACFALCSGRDNALKHFRIFVVPYTVGTVLPSEVNVCRSRE
ARW*
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mRNA from alignment at Ecto-sp13_S_contig18644:1573..2288-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig18644.5849.1 ID=mRNA_Ecto-sp13_S_contig18644.5849.1|Name=mRNA_Ecto-sp13_S_contig18644.5849.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=716bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18644:1573..2288- (Ectocarpus species13 EcNAP12_S_4_19m)
GGAACCGCCTGGAATTTGTGCGAGGGAAGGTTCGTGCACACTTGGGGCCA
TCTCGTAGGCAAGCCTCATGCACGACGATGGCGCCAAGGCCTGGCATTAC
AACACAACTGAGAATACTATGGTCTGGTCTGTGTACTTCGTGTGCTGCAG
GTGTGAGGACGAGGTGGAAGAAACTGGCTGCGTTAGCAGTCACTGCCGAC
GCGATGAAGAAGACAGGGAAGAAGCTGGCATCTGCGAATTGCGTCAAACG
TGCCCTGGCGTTACATATCTGGCTCACACTCACGGCGGCTGCTTGTGGTC
TAGAACAATTCTTGCAAAGCTCGTTATTGATGGCGATGATGACCCGTCAA
GAGGTCTTTTTGGCCTCTCTTTTTGCGAAAGGCGCTTGTTTTGCGCTGTG
CTCTGGGCGTGACAATGCTCTCAAGCATTTTCGTATTTTTGTCGTACCAT
ACACTGTAGGGACCGTCCTCCCTTCCGAGGTCAATGTGTGTCGTAGTCGC
GAGGCAAGGTGGTGAAAACACAACGACGCGTAGGATATGAGGTATCTCCA
AACGTACATTTCGCCTTCCTCAAAGACGGAGGACGAGCATTATACGGTAT
GATATAGAAGTACTCGGGGTTCCAGGAGAAGAAGTCCCCGCGGGACGGGT
CGGCGTATCTCCTGGAGCACGAAGCTTTGGTGGCGCGAGAGGCCTCCAAT
GGATCCCATGGAGAGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig18644:1573..2288-

>mRNA_Ecto-sp13_S_contig18644.5849.1 ID=mRNA_Ecto-sp13_S_contig18644.5849.1|Name=mRNA_Ecto-sp13_S_contig18644.5849.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=312bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18644:1573..2288- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAAGAAGACAGGGAAGAAGCTGGCATCTGCGAATTGCGTCAAACGTGC
CCTGGCGTTACATATCTGGCTCACACTCACGGCGGCTGCTTGTGGTCTAG
AACAATTCTTGCAAAGCTCGTTATTGATGGCGATGATGACCCGTCAAGAG
GTCTTTTTGGCCTCTCTTTTTGCGAAAGGCGCTTGTTTTGCGCTGTGCTC
TGGGCGTGACAATGCTCTCAAGCATTTTCGTATTTTTGTCGTACCATACA
CTGTAGGGACCGTCCTCCCTTCCGAGGTCAATGTGTGTCGTAGTCGCGAG
GCAAGGTGGTGA
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