mRNA_Ecto-sp13_S_contig18644.5848.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig18644.5848.1
Unique NamemRNA_Ecto-sp13_S_contig18644.5848.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig18644.5848.1 vs. uniprot
Match: D7G720_ECTSI (NB-ARC and TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G720_ECTSI)

HSP 1 Score: 76.6 bits (187), Expect = 4.580e-15
Identity = 40/51 (78.43%), Postives = 43/51 (84.31%), Query Frame = 2 
Query:    2 PRDGSAYLLEHEALVAREASNGSHGEEVVVKTLTIGKAINFLRRLRGYSVW 154
            PRD SAYL+EHEALVAREASNGS+GE V VK +TIGKAINFLR L G S W
Sbjct: 1281 PRDRSAYLVEHEALVAREASNGSNGE-VAVKIVTIGKAINFLRHLCGNSEW 1330
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig18644.5848.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G720_ECTSI4.580e-1578.43NB-ARC and TPR repeat-containing protein n=1 Tax=E... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig18644contigEcto-sp13_S_contig18644:1258..1652 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size157
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size156
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462956.0530882-CDS-Ecto-sp13_S_contig18644:1258..13351681462956.0530882-CDS-Ecto-sp13_S_contig18644:1258..1335Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18644 1259..1335 -
1681462956.0730383-CDS-Ecto-sp13_S_contig18644:1573..16521681462956.0730383-CDS-Ecto-sp13_S_contig18644:1573..1652Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18644 1574..1652 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig18644.5848.1prot_Ecto-sp13_S_contig18644.5848.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig18644 1259..1652 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig18644.5848.1

>prot_Ecto-sp13_S_contig18644.5848.1 ID=prot_Ecto-sp13_S_contig18644.5848.1|Name=mRNA_Ecto-sp13_S_contig18644.5848.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=52bp
PAGRVGVSPGARSFGGARGLQWIPWRGGGREDPHHRKGHQLLEAPARVLG
VE
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mRNA from alignment at Ecto-sp13_S_contig18644:1258..1652-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig18644.5848.1 ID=mRNA_Ecto-sp13_S_contig18644.5848.1|Name=mRNA_Ecto-sp13_S_contig18644.5848.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=395bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18644:1258..1652- (Ectocarpus species13 EcNAP12_S_4_19m)
CCCGCGGGACGGGTCGGCGTATCTCCTGGAGCACGAAGCTTTGGTGGCGC
GAGAGGCCTCCAATGGATCCCATGGAGAGGTGAGCAGCCGAGCACGAGGT
TGGAGGTAGTCCTACTTTCTCCTCATTTAGTTGCTGTCGCGGGCGTGTCA
TGTCCGAGAATGATGGAACACTGTGACTGGCGTGGTTCTGCTCCTGATGT
CGTTGCCAGCTTGGCGTCAAACTCGCCCGTATCATGCGCAGGTATTGCAC
GCGTTGTTTCAGTCGTGGTATGGATTTTTGTGTTGGACTTCTCCATGTGT
TGCACTATGCTGTACAGGAGGTGGTCGTGAAGACCCTCACCATCGGAAAG
GCCATCAACTTCTTGAGGCGCCTGCGCGGGTACTCGGTGTGGAAC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig18644:1258..1652-

>mRNA_Ecto-sp13_S_contig18644.5848.1 ID=mRNA_Ecto-sp13_S_contig18644.5848.1|Name=mRNA_Ecto-sp13_S_contig18644.5848.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=156bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18644:1258..1652- (Ectocarpus species13 EcNAP12_S_4_19m)
CCCGCGGGACGGGTCGGCGTATCTCCTGGAGCACGAAGCTTTGGTGGCGC
GAGAGGCCTCCAATGGATCCCATGGAGAGGAGGTGGTCGTGAAGACCCTC
ACCATCGGAAAGGCCATCAACTTCTTGAGGCGCCTGCGCGGGTACTCGGT
GTGGAA
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