mRNA_Ecto-sp13_S_contig18584.5818.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig18584.5818.1
Unique NamemRNA_Ecto-sp13_S_contig18584.5818.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig18584.5818.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig18584contigEcto-sp13_S_contig18584:1157..2416 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size331
Hectar predicted targeting categoryother localisation
Exons3
Cds size222
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462953.8158977-UTR-Ecto-sp13_S_contig18584:1156..12651681462953.8158977-UTR-Ecto-sp13_S_contig18584:1156..1265Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig18584 1157..1265 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462953.8250806-CDS-Ecto-sp13_S_contig18584:1265..12901681462953.8250806-CDS-Ecto-sp13_S_contig18584:1265..1290Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18584 1266..1290 +
1681462953.8335342-CDS-Ecto-sp13_S_contig18584:1505..16351681462953.8335342-CDS-Ecto-sp13_S_contig18584:1505..1635Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18584 1506..1635 +
1681462953.841669-CDS-Ecto-sp13_S_contig18584:2349..24161681462953.841669-CDS-Ecto-sp13_S_contig18584:2349..2416Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18584 2350..2416 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig18584.5818.1prot_Ecto-sp13_S_contig18584.5818.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig18584 1266..2416 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig18584.5818.1

>prot_Ecto-sp13_S_contig18584.5818.1 ID=prot_Ecto-sp13_S_contig18584.5818.1|Name=mRNA_Ecto-sp13_S_contig18584.5818.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=74bp
MSASNVLKAGSPDPSHGCEDVRACRPSVPIPSCEHCPANHIKPAYMFILP
SRSWHSSSSLRSRSTHLHHGTRT*
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mRNA from alignment at Ecto-sp13_S_contig18584:1157..2416+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig18584.5818.1 ID=mRNA_Ecto-sp13_S_contig18584.5818.1|Name=mRNA_Ecto-sp13_S_contig18584.5818.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1260bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18584:1157..2416+ (Ectocarpus species13 EcNAP12_S_4_19m)
AGTGGGGTAAGGCGTGCCAGCATTCGAGTCGCTCGGAGAAGAGGTTGGTA
ACTGTCGCGAAACATCGAAGGGAGGTCCGACCCCATAACGATTCGCCCAG
GTGTTCGCCATGTCCGCATCAAACGTGCTAAAAGGTTAGGCTTGTTGGTG
TTGTTGCTGTTGTGAGAAATCCATGCTGTACGTCGGTGATGGGCCAACAA
GCGTTGTTCCTTGCAAGCCAAGCCAGTACTGCTGTAGTTCATATGTTCCC
CGTTCTGGGATTCCGAGGGTCTCGTCGACTGTCGCAACCTGGCATCTCAA
AGACCTCTTTTCGTGTGAACACATACCCTCCATCGACTGTACTGCACAGC
CGGGTCACCTGATCCTTCGCATGGCTGTGAGGATGTTCGTGCTTGTCGAC
CATCAGTGCCAATCCCGTCCTGCGAACATTGTCCTGCGAACCATATCAAG
CCTGCATACATGTTCATCCTTCCATCAAGGTAAAGCCTTCGAGGTCGGAA
CCGTCTATAAGGCAGACCTGTGCGGAGTAGCAGCACCCGCATATCCTCTG
CCAACGGCACGTTGACCGTTATTTTTCGTTTATTCACCAGCAAAAAGATT
GGTGGGGTAATGAGAGGTTCCGAATCGCTCTCATGATCTGATGAATGGTG
AGATGCTTGCTGCTGCTGATGGAAACAGGAGATGTCGGCGGAGCTTTTTT
CTTCTTTCTCGTGTCCTCAACGAGACCAGGCCGAAGCATTGCAACCGACT
GCAAAACTCTGAATATCGTTGCATGTAGGGAACGTGCTGATCCGTAGGAT
TTTACCAACAGCAGTGTCTGTTGCTGCCGATACGTGCGGTGCAGCACCCG
GGCCGTCCGATCACTCGTCCCGCAACTGCCCTGTTTTCCCTTTCTAGAAC
GATGCATCGCTCCACACCTCCCACGCAATACCCATGCGTTGAGATATGGG
CCGATCGGCTCCTCTCGCACTCGAAAATACGACCTGTGTAGTAGAAGGGT
GAAGGCAATCAAAAGCTGGCGGATCCAAAACGCGGCGGAATTATTTTCGA
TCACCAGGGTTTCCAGTATTTTCGTAGTCCCGCGAAGGCTTTTTTTTGTG
ACAAAAAAAACTAAGCATGGAACCTCTCACTAATTCCTCGTAAAAACCCG
TGGTTCCATGATTTCGATCGTCCACACGTTTTTGGTGGCGCAGGTCTTGG
CACAGCAGTAGTAGCTTGCGCTCCCGCTCAACACATCTTCATCATGGCAC
CCGTACCTAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig18584:1157..2416+

>mRNA_Ecto-sp13_S_contig18584.5818.1 ID=mRNA_Ecto-sp13_S_contig18584.5818.1|Name=mRNA_Ecto-sp13_S_contig18584.5818.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=222bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18584:1157..2416+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTCCGCATCAAACGTGCTAAAAGCCGGGTCACCTGATCCTTCGCATGG
CTGTGAGGATGTTCGTGCTTGTCGACCATCAGTGCCAATCCCGTCCTGCG
AACATTGTCCTGCGAACCATATCAAGCCTGCATACATGTTCATCCTTCCA
TCAAGGTCTTGGCACAGCAGTAGTAGCTTGCGCTCCCGCTCAACACATCT
TCATCATGGCACCCGTACCTAA
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